ID: uc003xyq.2_intron_0_0_chr8_71581774_f.5p
GENE: (1)
chr8:71581724-71581973+


(2)
BRAIN 		(16)
CELL-LINE 		(1)
LIVER 		(4)
OTHER 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTGGGCGAGAGACATTTTAATCTGGAAGAGTCTTGTGATTTGGGAGACAGGTTTGGTAACCGTTCGTTATTCAGTAATAAATGTCAGGAAGGATTGCCAGATTTTTAGGCAGTGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTAGTAGTAGTAGTAGCCTGTTCATTTTTTTTTTTTTTTTTTTTGAGACGAAGTCTCGGTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGC
....................................................................................((((....((((((.........)))))).((((((..((..((..((......))..))..))..))).)))...........))))..............................................................................
...................................................................................84..................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR038857(GSM458540)
D20. (cell line)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGGC.......................................................2526.000.0025.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTCGGC......................................................2624.000.0023.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTGGC........................................................2424.000.0019.00--4.00-----------------1.00--
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTCGGC.......................................................2521.000.0019.00--2.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTGGC.........................................................2319.000.0019.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTGGC.....................................................2714.000.0013.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTCGGC.....................................................2714.000.0014.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTAAAG..................................................2713.000.001.003.008.00-1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTAT....................................................2512.000.00-7.005.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTCGGC........................................................2412.000.0010.00--2.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTGGC....................................................2811.000.0010.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTGGC..........................................................2210.000.009.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTCGGC....................................................288.000.004.00--4.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTACTG....................................................257.000.00-6.001.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTCGGC......................................................247.000.004.00--3.00--------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCCAG..................................................266.000.00-2.001.00-2.001.00------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTCGGC....................................................266.000.004.00--2.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTATTG..................................................276.000.00-4.001.00--1.00------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTATT...................................................266.000.00-2.004.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTGGCC.....................................................275.000.005.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTTGGC...................................................295.000.005.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTCGGC.....................................................255.000.003.00--2.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTACTG...................................................275.000.00-4.00--1.00-------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTCGGC...................................................294.000.004.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTACTG..................................................274.000.00-1.002.00-1.00-------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTAAG....................................................264.000.001.00-1.00-1.001.00------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTATTT..................................................274.000.00-3.001.00---------------------
....................................................................................................................................................TGTAGTAGTAGTAGTAGTACAG................................................................................224.000.00-------4.00----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTTTGGC..................................................304.000.004.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCAAG....................................................244.000.00--1.00-1.002.00------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTATG....................................................264.000.001.002.001.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTACTG....................................................264.000.00-2.001.00--1.00------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCTAG..................................................263.000.00----2.001.00------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTGGGC.....................................................273.000.003.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCG.....................................................243.000.00-2.00--1.00-------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTACTG..................................................283.000.00-1.002.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTCGGC........................................................213.000.001.00--2.00--------------------
.......................................................................................................................................................AGTAGTAGTAGTAGTAGGGCT..............................................................................213.000.00--------1.00-2.00-------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTACAT....................................................253.000.00-2.001.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTATAG....................................................253.000.001.001.001.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTCTGG.......................................................253.000.003.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCAAG..................................................273.000.001.00----1.001.00-----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTCGG.......................................................253.000.003.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCCG...................................................263.000.001.001.00---1.00------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTCGGC........................................................223.000.003.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTGGCT....................................................283.000.002.00--1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCCAG...................................................263.000.001.00-1.00--1.00------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTCGG........................................................243.000.003.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTCGGC.........................................................233.000.002.00--1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCTTT..................................................273.000.00-1.001.00--1.00------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTCGGC...........................................................213.000.003.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGGGC......................................................263.000.003.00-----------------------
.....................CTGGAAGAGTCTTGTAGGG..................................................................................................................................................................................................................192.000.00---------2.00--------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCAG....................................................242.000.00--2.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTGGGC.........................................................232.000.002.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGCC.......................................................252.000.002.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGACC..................................................272.000.001.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTGGCT.......................................................252.000.001.00--1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTAAAT..................................................272.000.00-1.001.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTCCTG.....................................................242.000.00-1.00---1.00------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTCGGC......................................................252.000.002.00-----------------------
......................................................................................................................................................TAGTAGTAGTAGTAGTAGGGCT..............................................................................222.000.00--------2.00---------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTGGC.......................................................242.000.002.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTCGGC.....................................................242.000.002.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTGGCT..................................................282.000.001.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGGCT......................................................262.000.002.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCTC...................................................262.000.00----1.001.00------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTGGGC..................................................282.000.002.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTAAA...................................................272.000.001.00-1.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTCTGG....................................................282.000.001.00--1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGG........................................................242.000.001.00--1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCGG...................................................262.000.00--1.00--1.00------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTATTG....................................................252.000.00-1.001.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTGG......................................................262.000.001.00--1.00--------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCAAG..................................................262.000.00-1.001.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTGGCT........................................................242.000.002.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTATTG....................................................262.000.00-1.00--1.00-------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCG.....................................................252.000.00--1.001.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTGGC...................................................272.000.002.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTGG.....................................................272.000.002.00-----------------------
................................................................................................................................................TGTGTGTAGTAGTAGTAGTAGCAGT.................................................................................252.000.00---2.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTATG.....................................................252.000.00-2.00----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTCGGC............................................................202.000.002.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTGGGC.......................................................252.000.002.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCGGC...................................................272.000.002.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTCAAG....................................................252.000.00-1.00--1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCTGG..................................................272.000.001.001.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTATG...................................................261.000.00-1.00----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCGGG..................................................261.000.00------1.00-----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTGCC......................................................261.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTGTTC.....................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTCAG.....................................................241.000.00-----1.00------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCATG....................................................241.000.00-----1.00------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCGGC..................................................271.000.001.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCCG...................................................251.000.00-1.00----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTCGGT.....................................................251.000.00---1.00--------------------
..........................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGCGCGAGAC....281.000.00-----------1.00------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCTTT...................................................261.000.00-----1.00------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGAGATT................................................291.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGGG.......................................................251.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGGGT..................................................271.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTCTAT..................................................281.000.00--1.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCTC....................................................261.000.00----1.00-------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCTC....................................................241.000.00------1.00-----------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTCAG......................................................241.000.00----1.00-------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCTTA..................................................261.000.00-----1.00------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCTAG....................................................241.000.00-----1.00------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTATAT....................................................261.000.00--1.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGTTG..................................................271.000.00--1.00---------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGGGG..................................................261.000.00---1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTCTTA........................................................211.000.00----1.00-------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCACG..................................................261.000.00----1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCTAG..................................................271.000.00--1.00---------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTTTGG....................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGCTGG.................................................281.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTCGAG....................................................261.000.001.00-----------------------
........................................................................................AAGGATTGCCAGATTGAT................................................................................................................................................181.000.00-------------------1.00----
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCGTT...................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTAAGT..................................................271.000.00-1.00----------------------
..............................TCTTGTGATTTGGGAGACA.........................................................................................................................................................................................................1911.001.00--------------------1.00---
....................................................................................................................TCTGTGTGTGTGTGTGTGTGTGTGACCG..........................................................................................................281.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTATCG..................................................281.000.00-1.00----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTGGGC....................................................281.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCGGT..................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCCTG...................................................261.000.00-1.00----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCCGG..................................................261.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCCAA..................................................271.000.00----1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTATAA..................................................271.000.00-1.00----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTGGCC..................................................281.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTGTGA........................................................241.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCTAC..................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGTG...................................................261.000.00---1.00--------------------
...............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTGAGCCCG...............................................281.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGTG.......................................................251.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTCCAG....................................................251.000.00-1.00----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTCGG......................................................261.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCAAT...................................................261.000.00-1.00----------------------
....................................................................................................................................................TGTAGTAGTAGTAGTGC.....................................................................................171.000.00------------1.00-----------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCCGG...................................................271.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTTCGGC..................................................301.000.001.00-----------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTTAAT....................................................271.000.00-1.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTATTC....................................................251.000.00------1.00-----------------
.....................................ATTTGGGAGACAGGTTTGGTAACCGTTCG........................................................................................................................................................................................2911.001.001.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGTTGG.................................................271.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTTGGGC..................................................301.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCCC....................................................251.000.001.00-----------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTTGGCT...................................................281.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTAAAT....................................................251.000.00-----1.00------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACGAAGGG...........................................291.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTCCTC.....................................................251.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCTGG...................................................271.000.00-1.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTCCG......................................................231.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTGG...........................................................211.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTCGCC....................................................251.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTCTTG..................................................281.000.00--1.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCTAC...................................................261.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTCTGG......................................................261.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTCCTG....................................................261.000.00-1.00----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTAAAT....................................................261.000.00--1.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGACGG.................................................281.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTTGG....................................................281.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTGGCT...................................................291.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTGCG........................................................241.000.00---1.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTAATG...................................................271.000.00-1.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCCAC..................................................271.000.00---1.00--------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCAT....................................................241.000.00------1.00-----------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGAGCAGG...............................................301.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCTAA..................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCACT..................................................271.000.00-1.00----------------------
....................................................................................................................................................TGTAGTAGTAGTAGTATAG...................................................................................191.000.00----------------1.00-------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTGGCC....................................................281.000.00---1.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTATTA...................................................271.000.00-1.00----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTCTGC..........................................................221.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCTTT...................................................271.000.00----1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCAAG...................................................261.000.00---1.00--------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTGTT.....................................................261.000.00------1.00-----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGGGT......................................................261.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTAAAG...................................................271.000.00--1.00---------------------
...............................................................................................................................................................................................................................GCTGGAGTGCAGTGGCGCGATA.....221.000.00------------------1.00-----
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTTTGGCT..................................................291.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTAAAC..................................................271.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTCGC....................................................281.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTGGGC........................................................241.000.001.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGGGGG.................................................271.000.001.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGAGAAAAG..............................................301.000.00--1.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTAGT.....................................................251.000.00-1.00----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGC........................................................241.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTATTT..................................................281.000.00--1.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTCCGG.....................................................251.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTCTGC......................................................241.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTCTGG........................................................241.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTATTG..................................................281.000.00-1.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGGGGA.................................................281.000.00--1.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGGCC..................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTCCCG.....................................................241.000.00-----1.00------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTATT....................................................281.000.00------1.00-----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTCCGG......................................................261.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCAT...................................................261.000.00--1.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTGTGG......................................................261.000.001.00-----------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTGGCC....................................................271.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTCTGG....................................................261.000.00----1.00-------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTTTGGC...................................................281.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTCAG...................................................271.000.00----1.00-------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTAGAG..................................................281.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCCAG..................................................271.000.00-1.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCCCT...................................................261.000.00---1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTATTA..................................................271.000.00----1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTAAAA....................................................251.000.00-1.00----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTAGG...................................................271.000.00--1.00---------------------
....................................................................................................................TCTGTGTGTGTGTGTGTGTGGAC...............................................................................................................231.000.00---1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGGGG..................................................271.000.00----1.00-------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTC........................................................241.000.00---1.00--------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTAAAT.....................................................261.000.00--1.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTTTGC...................................................291.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTATGG....................................................261.000.001.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGCGGC.................................................271.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTCCG........................................................241.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCTTC...................................................261.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTACGG..................................................271.000.00-----1.00------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCCT....................................................241.000.00-----1.00------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTCTTG........................................................241.000.00---1.00--------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTCGCC.....................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGCCGG.................................................281.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCGAG...................................................261.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTAACG..................................................271.000.00--1.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTCTC...................................................271.000.00------1.00-----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTAGC.....................................................271.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTGAGAGGG...............................................301.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTCACC............................................................201.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTATTT....................................................281.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTAATG....................................................261.000.00-1.00----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCCTG..................................................271.000.00-1.00----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGCGTT.................................................271.000.00------1.00-----------------
..........................................................................................................................................................................TGTTCATTTTTTTTTCGGC.............................................................191.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTACCG....................................................261.000.00-1.00----------------------
...............................................................................................................................................................................................................................GCTGGAGTGCAGTGGCGCGAA......211.000.00-------------1.00----------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTTGGT....................................................281.000.00---1.00--------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCCCC...................................................261.000.00--1.00---------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCCGG..................................................271.000.00----1.00-------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTACG...................................................271.000.00-1.00----------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTCGGC........................................................231.000.001.00-----------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTATTT....................................................261.000.00-1.00----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTGGCC.......................................................251.000.001.00-----------------------
........................................................................................................................................................................CCTGTTCATTTTTTTTTTTTTTTTTTTTTTTG..................................................321.000.00------1.00-----------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTTTTCG...................................................281.000.00----1.00-------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTAAT....................................................261.000.00--1.00---------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTTTTTGCC.....................................................271.000.00---1.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTATT...................................................271.000.00--1.00---------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTCGC....................................................261.000.001.00-----------------------
...........................................................................................................................................................................GTTCATTTTTTTTTTTTTTTTTTGGC.....................................................261.000.001.00-----------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTTCAG...................................................261.000.00----1.00-------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTCTGG............................................................201.000.001.00-----------------------
..........................................................................................................................................................................TGTTCATTTTTTTTTTTTTTGGG.........................................................231.000.001.00-----------------------
...............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTGAGCGGG...............................................281.000.001.00-----------------------
...............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTGAGCCC................................................271.000.001.00-----------------------
..............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCTCG..................................................261.000.00----1.00-------------------
.............................................................................................................................................................................TCATTTTTTTTTTTTTTTTTTTCCCG...................................................261.000.00-1.00----------------------
..........................................................................................................................................................................................TTTTTTTTTTGAGACGAAGTCTCGGTCTGTC.................................3120.500.50---0.50--------------------
........................................................................................................................................................GTAGTAGTAGTAGTAGCC................................................................................1830.330.33-----------------------0.33

Antisense strand
GTGGGCGAGAGACATTTTAATCTGGAAGAGTCTTGTGATTTGGGAGACAGGTTTGGTAACCGTTCGTTATTCAGTAATAAATGTCAGGAAGGATTGCCAGATTTTTAGGCAGTGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTAGTAGTAGTAGTAGCCTGTTCATTTTTTTTTTTTTTTTTTTTGAGACGAAGTCTCGGTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGC
....................................................................................((((....((((((.........)))))).((((((..((..((..((......))..))..))..))).)))...........))))..............................................................................
...................................................................................84..................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR038857(GSM458540)
D20. (cell line)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
........................................................................................AAGGATTGCCAGATTTTTAA.............................................................................................................................................. 201.000.00------1.00-----------------
..............................................................................................................................................................................................................CTCGGTCTGTCGCCCAGGCTGGAGTCTTC............... 291.000.001.00-----------------------
.................................................................................................................................................................................................................GGTCTGTCGCCCAGGCTGGAGTTGCC............... 261.000.001.00-----------------------
..............................................................................................................................................................................................................GCCTGGGCGACAGACCGAG......................... 1901.001.00--------------1.00---------
..............................................................................................................................................................................................................CTCGGTCTGTCGCCCGAGC......................... 191.000.00-----------------1.00------
........................................................................................................................................................................................................................CGCCCAGGCTGGAGTGCAGTGGCGCGCCC..... 291.000.00----------------------1.00-
.................................................................................................................GGCTCTGTGTGTGTGTGTGTGTGA................................................................................................................. 241.000.00---1.00--------------------
............................................................................................................................................................................TTCATTTTTTTTTTTTTTTTTTTTGCCC.................................................. 281.000.00---------------1.00--------