ID: uc003xyo.1_intron_8_0_chr8_71510491_r.5p
GENE: (2)
chr8:71512054-71512303-


(8)
B-CELL 		(1)
BREAST 		(11)
CELL-LINE 		(2)
HEART 		(5)
HELA 		(1)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(2)
XRN.ip

Sense strand
TTCTATCATTTTTGTTACTCTTCAGTACAATGTCACCCTCCCAGCAACAGGTAGGTAATTTACGCTAAGAATTTTCTACGTAAATAGAAGTTCAGTTGAACAAACTTGGAAATTTTCATGAATGCTAGGTCCTGCGTTAATTAATCGTCAGAGATCTCATCCATGATGTGACTGAATGTTATTGTGATGATTTTATAATACAAGATCTGATGTTTTTGATTGACTTTACCCTGTATATGTTTTCTGTTTA
.........................................................................................................((((..((..(((((.(((..((((((((((.........)).))).)))))))).))))).))..))))....((((((((.....))))))))..................................................
.............................................................................................94........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343334SRR343335SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................AACAAACTTGGAAATAGC......................................................................................................................................1873.000.0022.0011.0011.009.00---3.005.004.00-2.00--1.002.00----1.00--1.00--1.00-----------
..................................................................................................AACAAACTTGGAAATAGCT.....................................................................................................................................1931.000.005.007.004.004.00--7.00------2.001.00-----------------1.00-----
...................................................................................................................................................................................TATTGTGATGATTTTATAATACAAGATCTGATG......................................33110.0010.00-----10.00--------------------------------
..................................................................................................AACAAACTTGGAAATAGA......................................................................................................................................188.000.004.004.00------------------------------------
.......................................................................................................................................................................GTGACTGAATGTTATTGTGATGATT..........................................................2517.007.00----6.00--------------------------1.00------
.......................................................................................................................................................................GTGACTGAATGTTATTGTGATGAT...........................................................2416.006.00----2.00--2.00-------------------1.001.00---------
.........................................................................................................................................................................GACTGAATGTTATTGTGATGAT...........................................................2214.004.00----4.00---------------------------------
........................................................................................................................................................................TGACTGAATGTTATTGTGATGAT...........................................................2312.002.00----------2.00---------------------------
........................................................................................................................................................................TGACTGAATGTTATTGTGATGATT..........................................................2412.002.00----1.00-----------------------------1.00---
...................................................................................................................................................................................TATTGTGATGATTTTATAATACAAGA.............................................2612.002.00------------1.00-----------------1.00-------
....................................................................................................................................................................................ATTGTGATGATTTTATAATACAAGATCTGATG......................................3211.001.00------------------1.00-------------------
......................................................................................................................................................................TGTGACTGAATGTTATTGTGATGATTTTA.......................................................2911.001.00-----------------------------1.00--------
...................................................................................................................................................................................TATTGTGATGATTTTATAATAC.................................................2211.001.00-----1.00--------------------------------
........TTTTTGTTACTCTTCAGTACAATG..........................................................................................................................................................................................................................2411.001.00------------------------1.00-------------
..................................................................................................................................................................................TTATTGTGATGATTTTATAATACAAGATCTGATG......................................3411.001.00------------------1.00-------------------
.................................................................................................GAACAAACTTGGAAATAGC......................................................................................................................................191.000.00-1.00------------------------------------
................................TCACCCTCCCAGCAACAG........................................................................................................................................................................................................1811.001.00----------------1.00---------------------
.........................................................................................................................................................................................................................................TATATGTTTTCTGTTAGCA191.000.00---------------------1.00----------------
...........................CAATGTCACCCTCCCAGCAACAGAAG.....................................................................................................................................................................................................261.000.00-------------------1.00------------------
......CATTTTTGTTACTCTTCAGTA...............................................................................................................................................................................................................................2111.001.00----------------1.00---------------------
.......................................................................................................................................................................GTGACTGAATGTTATTGTGAT..............................................................2111.001.00----------------------1.00---------------
.......................................................................................................................................................................GTGACTGAATGTTATTGTGATTATT..........................................................2511.001.00----1.00---------------------------------
..................................................................................................................................................................................TTATTGTGATGATTTTATAATACA................................................2411.001.00------------1.00-------------------------
........................GTACAATGTCACCCTCCCAGC.............................................................................................................................................................................................................2111.001.00---------------------------------1.00----
......................CAGTACAATGTCACCCTCCCAG..............................................................................................................................................................................................................2211.001.00-------------------------1.00------------
........................GTACAATGTCACCCTCCCAG..............................................................................................................................................................................................................2011.001.00-----------------1.00--------------------
............TGTTACTCTTCAGTACAATGTCA.......................................................................................................................................................................................................................2311.001.00-----------------1.00--------------------
.......................................................................................................................................................................................................................TTGATTGACTTTACCCTGTAA..............211.000.00-----------------------------------1.00--
..............................................................................................................................................................ATCCATGATGTGACTGA...........................................................................1711.001.00-----1.00--------------------------------
.................................CACCCTCCCAGCAACAGAAGA....................................................................................................................................................................................................2120.500.50-------------------------------------0.50
.................................CACCCTCCCAGCAACAG........................................................................................................................................................................................................1720.500.50------------------------------------0.50-

Antisense strand
TTCTATCATTTTTGTTACTCTTCAGTACAATGTCACCCTCCCAGCAACAGGTAGGTAATTTACGCTAAGAATTTTCTACGTAAATAGAAGTTCAGTTGAACAAACTTGGAAATTTTCATGAATGCTAGGTCCTGCGTTAATTAATCGTCAGAGATCTCATCCATGATGTGACTGAATGTTATTGTGATGATTTTATAATACAAGATCTGATGTTTTTGATTGACTTTACCCTGTATATGTTTTCTGTTTA
.........................................................................................................((((..((..(((((.(((..((((((((((.........)).))).)))))))).))))).))..))))....((((((((.....))))))))..................................................
.............................................................................................94........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343334SRR343335SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................CTAAGAATTTTCTACGACT....................................................................................................................................................................... 192.000.00-------2.00------------------------------
...............................................................................................................................................................................................................TGATGTTTTTGATTGAAACG....................... 201.000.00---1.00----------------------------------
.........................TACAATGTCACCCTCCGG............................................................................................................................................................................................................... 181.000.00--------1.00-----------------------------