ID: uc003xbn.2_intron_19_0_chr8_22175789_f.5p
GENE: PIWIL2(20)
chr8:22175739-22175988+


(5)
AGO2.ip
(1)
AGO3.ip
(1)
B-CELL
(2)
BRAIN
(2)
BREAST
(31)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(2)
LIVER
(2)
OTHER
(4)
SKIN
(1)
XRN.ip

Sense strand
TGGACAGCCTGAAGCTATGCCTCGTGGGCTCCTTAAAAAAGTTTTATGAGGTGAGGAGAACAGAAATTCTCAGGCTTCTGGGGTTTTTTGTTTTTTTATTTTTTTTTTTGAGACAGAGTCTCACTCTTGTCGCCCAGGTTGGAGTGCAGTGGTGCGATCTCTGTTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGGTTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTACAGGCGTGCACCAGCACG
........................................................................(((....(((((.(((((((((...............)))))))))....))))).))).((((((.(((((((((((((.(((.....)))))))))))..)))))...))))))..............................................................
........................................................................73...................................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189782DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038854(GSM458537)
MM653. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM532882(GSM532882)
G696T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................CTGGGGTTTTTTGTTCGT...........................................................................................................................................................184.000.004.00-------------------------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAGCCCCCG.................................252.000.002.00-------------------------------------------------------
..............................................................................TGGGGTTTTTTGTTTTTTTGTC......................................................................................................................................................222.000.00-2.00------------------------------------------------------
...................................................................................................................................................................TTCACTGCAACCTCTGCCTGGGT................................................................232.000.00-2.00------------------------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAGCCCTCG.................................252.000.00-2.00------------------------------------------------------
.........................................................................................................................................................................................GGGTTCAAGCGGTTCTCCTGGCT..........................................232.000.00-------------2.00------------------------------------------
..................................................................................................................................CGCCCAGGTTGGAGTGCAGTAAG.................................................................................................232.000.00-------------------1.00---------------------------------1.00--
......................................................................................TTTGTTTTTTTATTTTTTTTTTCAG...........................................................................................................................................251.000.00--1.00-----------------------------------------------------
.......................................................GAGAACAGAAATTCTCC..................................................................................................................................................................................171.000.00-----------------------------------------------1.00--------
...................................................................................................................................GCCCAGGTTGGAGTGCAGTGGTGCGA.............................................................................................2601.001.00---------------------1.00----------------------------------
...................................................................................................................................................................TTCACTGCAACCTCTGCCTCCGGGC..............................................................251.000.001.00-------------------------------------------------------
...........................................................................................TTTTTTATTTTTTTTTTTGCTTC........................................................................................................................................231.000.001.00-------------------------------------------------------
..........................................................................................................................................................................................................................AGTAGCTGGGATTACAGGCGTGCACCTGGC..301.000.001.00-------------------------------------------------------
.......................................................................................TTGTTTTTTTATTTTTTTTTTGT............................................................................................................................................231.000.00--1.00-----------------------------------------------------
...............................................................................................TTATTTTTTTTTTTGAGACAGCA....................................................................................................................................231.000.00----------------------1.00---------------------------------
.................................................................................................................................TCGCCCAGGTTGGAGTGCAGTGTAT................................................................................................251.000.00---------------------------------------------------1.00----
................................................................................................TATTTTTTTTTTTGAGACAGTGCG..................................................................................................................................241.000.001.00-------------------------------------------------------
...........................................................................................TTTTTTATTTTTTTTTTTGTTC.........................................................................................................................................221.000.00--1.00-----------------------------------------------------
........................................................................................................................................................................TGCAACCTCTGCCTCCTGGGAAGT..........................................................241.000.00--------------------------------------------------1.00-----
..................................................................................................................................................................................................CGGTTCTCCTGCCTCAGCCCAAG.................................231.000.00--1.00-----------------------------------------------------
........................................................................................TGTTTTTTTATTTTTTTTTTGAC...........................................................................................................................................231.000.00-1.00------------------------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAGCCCTGG.................................251.000.001.00-------------------------------------------------------
..............................................................................................................................................AGTGCAGTGGTGCGATCTCTGTTCACCGCG..............................................................................301.000.001.00-------------------------------------------------------
.............................................................................................TTTTATTTTTTTTTTTGCGTG........................................................................................................................................211.000.001.00-------------------------------------------------------
...........................................................................................TTTTTTATTTTTTTTTTTGTTTA........................................................................................................................................231.000.00-1.00------------------------------------------------------
............................................................................................................................TCTTGTCGCCCAGGTTGGAGTGCAGTGATG................................................................................................301.000.00-1.00------------------------------------------------------
............................................................................TCTGGGGTTTTTTGTTTTTTTTA.......................................................................................................................................................231.000.001.00-------------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTCTAT...............................................................................................................................................241.000.00----------------1.00---------------------------------------
..............................................TGAGGTGAGGAGAACTCTG.........................................................................................................................................................................................191.000.00------------------------------1.00-------------------------
.............................................................................................................................................................................................TCAAGCGGTTCTCCTGCCTCAGCCTTCCGGG..............................311.000.001.00-------------------------------------------------------
..............................................................................TGGGGTTTTTTGTTTTTGATT.......................................................................................................................................................211.000.00-1.00------------------------------------------------------
.............................................................................CTGGGGTTTTTTGTTTTTTTTTTC.....................................................................................................................................................241.000.001.00-------------------------------------------------------
...................................................................................................................................................................TTCACTGCAACCTCTGCCTAAA.................................................................221.000.00---------------------------1.00----------------------------
....................................................................................TTTTTGTTTTTTTATTTTTTTTTTTTT...........................................................................................................................................271.000.00--1.00-----------------------------------------------------
..............................................................................TGGGGTTTTTTGTTTTCAAG........................................................................................................................................................201.000.001.00-------------------------------------------------------
............................................................................................................................................................................................TTCAAGCGGTTCTCCTGAA...........................................191.000.00--------------------------1.00-----------------------------
................................................................................................................................................................................................................CAGCCTTCCAAGTAGCGCA.......................191.000.00--------------------------------1.00-----------------------
..............................................................................TGGGGTTTTTTGTTTTAACG........................................................................................................................................................201.000.001.00-------------------------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAGCCCCGG.................................251.000.001.00-------------------------------------------------------
....................................................................................................................................................................................................GTTCTCCTGCCTCAGCCTGCCG................................221.000.00----------------------------------------------1.00---------
..............................................................................TGGGGTTTTTTGTTTTAG..........................................................................................................................................................181.000.001.00-------------------------------------------------------
...............................................................................................................................................................................................AAGCGGTTCTCCTGCCTCCGCC.....................................221.000.00-----------------------------------------1.00--------------
.............................................................................CTGGGGTTTTTTGTTCGA...........................................................................................................................................................181.000.001.00-------------------------------------------------------
..................................................................................GTTTTTTGTTTTTTTATTTTTTTGTAG.............................................................................................................................................271.000.00--1.00-----------------------------------------------------
................................................................................................................................GTCGCCCAGGTTGGAGATG.......................................................................................................191.000.00----------------------------------1.00---------------------
..............................................................................TGGGGTTTTTTGTTTTTTTGGGC.....................................................................................................................................................231.000.001.00-------------------------------------------------------
.................................................................................................................................................................................TGCCTCCTGGGTTCAAGCGGT....................................................2101.001.00--------------------------------------------1.00-----------
.....................................................................................TTTTGTTTTTTTATTTTTTTGCTA.............................................................................................................................................241.000.00-1.00------------------------------------------------------
..............................................................................TGGGGTTTTTTGTTTTTTCGAG......................................................................................................................................................221.000.001.00-------------------------------------------------------
..................................................................................................................................CGCCCAGGTTGGAGTGCAGTGGTCTT..............................................................................................261.000.00-------1.00------------------------------------------------
.................................................................................................................................TCGCCCAGGTTGGAGTGCAGTGGGTG...............................................................................................261.000.001.00-------------------------------------------------------
.........................................................................................GTTTTTTTATTTTTTTTTTCGGC..........................................................................................................................................231.000.001.00-------------------------------------------------------
.................................................................................................................................TCGCCCAGGTTGGAGTGCGTCA...................................................................................................221.000.001.00-------------------------------------------------------
....................................................................................TTTTTGTTTTTTTATTTTTTTTTTTTTT..........................................................................................................................................281.000.00--1.00-----------------------------------------------------
.........................................................................................GTTTTTTTATTTTTTTCGAG.............................................................................................................................................201.000.00-1.00------------------------------------------------------
......................................................................................TTTGTTTTTTTATTTTTTTTTTTAT...........................................................................................................................................251.000.00--1.00-----------------------------------------------------
.............................................................................CTGGGGTTTTTTGTTGGG...........................................................................................................................................................181.000.00--1.00-----------------------------------------------------
.........................................................................................GTTTTTTTATTTTTTTTTTTTAAA.........................................................................................................................................241.000.00----------------1.00---------------------------------------
..................................................................................................................................CGCCCAGGTTGGAGTGCAGTGTTTA...............................................................................................251.000.00-----1.00--------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTTTTTTTG............................................................................................................................................2711.001.00--1.00-----------------------------------------------------
............................................................................................TTTTTATTTTTTTTTTTGAGACAGGGCC..................................................................................................................................281.000.00-1.00------------------------------------------------------
...............................................................................................................................................................................................AAGCGGTTCTCCTGCCTCAGCCCCCG.................................261.000.001.00-------------------------------------------------------
.........................................................................................GTTTTTTTATTTTTTTTTTTCGAG.........................................................................................................................................241.000.00-1.00------------------------------------------------------
..............................................................................TGGGGTTTTTTGTTTTTTTCTCG.....................................................................................................................................................231.000.00-1.00------------------------------------------------------
.....................................................................................TTTTGTTTTTTTATTTTTTTTTTTC............................................................................................................................................251.000.001.00-------------------------------------------------------
..............................................................................................................................TTGTCGCCCAGGTTGGAGTGCACCGG..................................................................................................261.000.001.00-------------------------------------------------------
..................................................................................................................................................................................................CGGTTCTCCTGCCTCAGC......................................1801.001.00----1.00---------------------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAGCCGGG..................................241.000.001.00-------------------------------------------------------
..............................................................................................................................TTGTCGCCCAGGTTGGAGTGCAGGGG..................................................................................................261.000.001.00-------------------------------------------------------
....................................................................................................................................................................TCACTGCAACCTCTGCCTCCTGGGTTCACGAG......................................................321.000.001.00-------------------------------------------------------
..........................................................................................TTTTTTTATTTTTTTTTTTCCTT.........................................................................................................................................231.000.001.00-------------------------------------------------------
.............................................................................................TTTTATTTTTTTTTTTGATTT........................................................................................................................................211.000.00--1.00-----------------------------------------------------
......................................................................................................................................................................ACTGCAACCTCTGCCTCCTGGGACCG..........................................................261.000.001.00-------------------------------------------------------
....................................................................................TTTTTGTTTTTTTATTTTTTTTTATTT...........................................................................................................................................271.000.00--1.00-----------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTTCTA...............................................................................................................................................241.000.00--1.00-----------------------------------------------------
..........................................................................................................................................TTGGAGTGCAGTGGTGCGATTGGC........................................................................................241.000.001.00-------------------------------------------------------
..................................................................................GTTTTTTGTTTTTTTATTTTTTTTTTCC............................................................................................................................................281.000.00--1.00-----------------------------------------------------
.....................................................................................................................................................................................................................TTCCAAGTAGCTGGGATTACAGCAC............251.000.00-1.00------------------------------------------------------
.............................................................................................................................................................................................TCAAGCGGTTCTCCTGCCTCAGCCCCCG.................................281.000.001.00-------------------------------------------------------
................................................................................................TATTTTTTTTTTTGAGACAGAGGCTC................................................................................................................................261.000.00-1.00------------------------------------------------------
..........................................................................................TTTTTTTATTTTTTTTTTTCG...........................................................................................................................................211.000.00----------------------------1.00---------------------------
.............................................................................CTGGGGTTTTTTGTTTTTCC.........................................................................................................................................................201.000.001.00-------------------------------------------------------
......................................................................................................................................................................ACTGCAACCTCTGCCTCCTGGGTTCT..........................................................261.000.00------------------1.00-------------------------------------
..........................................................................................TTTTTTTATTTTTTTTTTTCCCT.........................................................................................................................................231.000.00-1.00------------------------------------------------------
..........................................................................................TTTTTTTATTTTTTTTTTTGGGG.........................................................................................................................................231.000.001.00-------------------------------------------------------
...................................................................................................................................................................TTCACTGCAACCTCTGCCTCCTGCC..............................................................251.000.00-1.00------------------------------------------------------
.......................................................................................................................................................................................................................................ACAGGCGTGCACCAGCACGCCGG231.000.001.00-------------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTTTTTTGATC..........................................................................................................................................291.000.00--1.00-----------------------------------------------------
........................................................................................................................................................................................TGGGTTCAAGCGGTTCTCCTGTTA..........................................241.000.00-------------------------------------1.00------------------
.....................................................................................TTTTGTTTTTTTATTTTTTTTTTTTGT..........................................................................................................................................271.000.00-1.00------------------------------------------------------
..............................................................................................................................TTGTCGCCCAGGTTGGAGTGCAGTGCTGC...............................................................................................291.000.001.00-------------------------------------------------------
.....................................................................................TTTTGTTTTTTTATTTTTTTTTTTTTC..........................................................................................................................................271.000.00--1.00-----------------------------------------------------
.....................................................................................................................................CCAGGTTGGAGTGCAGTGCGGA...............................................................................................221.000.001.00-------------------------------------------------------
...........................................................................................TTTTTTATTTTTTTTTTTGGGG.........................................................................................................................................221.000.001.00-------------------------------------------------------
..........................................................................CTTCTGGGGTTTTTTGTTTTTTTTTTA.....................................................................................................................................................271.000.001.00-------------------------------------------------------
..........................................................................................TTTTTTTATTTTTTTTTTTCAT..........................................................................................................................................221.000.00----------------------1.00---------------------------------
............................................................................................TTTTTATTTTTTTTTTTGAGTCG.......................................................................................................................................231.000.00-1.00------------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTTCTT...............................................................................................................................................241.000.00--1.00-----------------------------------------------------
........................................................................................TGTTTTTTTATTTTTTTTTTTTC...........................................................................................................................................231.000.00-1.00------------------------------------------------------
.......................................................................................TTGTTTTTTTATTTTTTTTTTTAC...........................................................................................................................................241.000.00--1.00-----------------------------------------------------
.....................................................................................TTTTGTTTTTTTATTTTTTTTTT..............................................................................................................................................2340.250.25--0.25-----------------------------------------------------
.....................................................................................TTTTGTTTTTTTATTTTTTTTT...............................................................................................................................................2270.140.14----------------0.14---------------------------------------

Antisense strand
TGGACAGCCTGAAGCTATGCCTCGTGGGCTCCTTAAAAAAGTTTTATGAGGTGAGGAGAACAGAAATTCTCAGGCTTCTGGGGTTTTTTGTTTTTTTATTTTTTTTTTTGAGACAGAGTCTCACTCTTGTCGCCCAGGTTGGAGTGCAGTGGTGCGATCTCTGTTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGGTTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTACAGGCGTGCACCAGCACG
........................................................................(((....(((((.(((((((((...............)))))))))....))))).))).((((((.(((((((((((((.(((.....)))))))))))..)))))...))))))..............................................................
........................................................................73...................................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189782DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038854(GSM458537)
MM653. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM532882(GSM532882)
G696T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................GGTTGGAGTGCAGTGGTGCGATGGGC........................................................................................ 2611.000.0010.001.00------------------------------------------------------
....................................................................................TTTTTGTTTTTTTATTTTTTTTTTTG............................................................................................................................................ 268.000.00---8.00----------------------------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTCG.................................................. 284.000.003.001.00------------------------------------------------------
.................................................................................................................................................................................................GCGGTTCTCCTGCCTCAGCCTCAG................................. 244.000.004.00-------------------------------------------------------
...........................................................................................................................................................................................................................GTAGCTGGGATTACAGGCGTGG......... 223.000.00-3.00------------------------------------------------------
.................................................................................................................................................................................................GCGGTTCTCCTGCCTCAGCCTTCTG................................ 253.000.002.001.00------------------------------------------------------
......................................................................................TTTGTTTTTTTATTTTTTTTTGGA............................................................................................................................................ 243.000.00---------------1.00----2.00-----------------------------------
..................................................................................................................................................................................................CGGTTCTCCTGCCTCAACAG.................................... 203.000.00-----3.00--------------------------------------------------
..............................................................................................................................................AGTGCAGTGGTGCGATCTCTATA..................................................................................... 233.000.00-----------3.00--------------------------------------------
..........................................................................................AAAAAAAAAAATAAAAAAA............................................................................................................................................. 1902.002.00---------2.00----------------------------------------------
.....................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCAT......................................................... 282.000.00----1.00------------1.00--------------------------------------
....................................................................................................................................................................................CTCCTGGGTTCAAGCGGTTCTCCG.............................................. 242.000.002.00-------------------------------------------------------
...........................................................CCAGAAGCCTGAGAATTTCTGT......................................................................................................................................................................... 2212.002.00------------------------------------1.00--1.00----------------
....................................................................................................................................................................................................GTTCTCCTGCCTCAGCCTTGGGG............................... 232.000.001.001.00------------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTTTTTAAAA........................................................................................................................................... 282.000.00---------------2.00----------------------------------------
...........................................................................................................................................................................................................ACTTGGAAGGCTGAGGCA............................. 1802.002.00--------2.00-----------------------------------------------
.....................................................................................................................................................................................................................TTCCAAGTAGCTGGGATTACACTGG............ 252.000.002.00-------------------------------------------------------
.........................................................................................................................................................................GCAACCTCTGCCTCCTGGGTTCAAGCGGTTCA................................................. 322.000.002.00-------------------------------------------------------
......................................................................................................................................................................................CCTGGGTTCAAGCGGTTGGAC............................................... 212.000.00-2.00------------------------------------------------------
........................................................................................................................................GGTTGGAGTGCAGTGGTGCGATGTGC........................................................................................ 262.000.002.00-------------------------------------------------------
........................................................................................................................................................................................TGGGTTCAAGCGGTTCTCCTGCCTCG........................................ 262.000.002.00-------------------------------------------------------
.................................................................................................................................................................................................GCGGTTCTCCTGCCTCAGCCTTCCAAGTCTG.......................... 312.000.00-2.00------------------------------------------------------
..........................................................................................................................................................................................................CTACTTGGAAGGCTGAGGCAG........................... 2102.002.00----------2.00---------------------------------------------
....................................................................................................................................................................................CTCCTGGGTTCAAGCGGTTCTCCGG............................................. 251.000.00-1.00------------------------------------------------------
...................................................................................TTTTTTGTTTTTTTATTTTTTTTTAAAT........................................................................................................................................... 281.000.00-------------------1.00------------------------------------
............................................................................................................................................................................................TTCAAGCGGTTCTCCTGCCTCAGCCTTTCG................................ 301.000.00-------------------------1.00------------------------------
................................................................................................................................GTCGCCCAGGTTGGAGTGCAGTTT.................................................................................................. 241.000.00----------------------------------------1.00---------------
...........................................................................................................................................................................................GTTCAAGCGGTTCTCCTGCCTCAAGG..................................... 261.000.00-1.00------------------------------------------------------
..................................................................................................................................................................................GCCTCCTGGGTTCAAGCGGTTTGC................................................ 241.000.00-1.00------------------------------------------------------
.....................................................................................................................................................................................................TTCTCCTGCCTCAGCCTTCCGTA.............................. 231.000.00-------------1.00------------------------------------------
.......................................................................................................................................AGGTTGGAGTGCAGTGGTGCGATCCAC........................................................................................ 271.000.00-1.00------------------------------------------------------
......................................................................................................................................................................................................TCTCCTGCCTCAGCCTTCGGAA.............................. 221.000.00------------------------1.00-------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTTCTCGC.............................................. 321.000.00-1.00------------------------------------------------------
..................................................................................................................................................................................................TGAGGCAGGAGAACCG........................................ 1601.001.00------1.00-------------------------------------------------
........................................................................................................................................................................................TGGGTTCAAGCGGTTCTCCTGCCTCAGCGGG................................... 311.000.00-1.00------------------------------------------------------
.............................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAGCGGTCTGA................................................ 291.000.001.00-------------------------------------------------------
......................................................................................................................................................................................GAACCGCTTGAACCCAGG.................................................. 1801.001.00----1.00---------------------------------------------------
...................................................................................................................................................................................CCTCCTGGGTTCAAGCGGTTCTCCTATG........................................... 281.000.001.00-------------------------------------------------------
.................................................................................................................................................................................................................................GGGATTACAGGCGTGCAGACC.... 211.000.001.00-------------------------------------------------------
......................................................................................................................................................................................................ACTTGGAAGGCTGAGGCAGGAGA............................. 2301.001.00--------------1.00-----------------------------------------
......................................................................................................................................................................................................TCTCCTGCCTCAGCCTTCCCCA.............................. 221.000.00-------------------------------------------------1.00------
........................................................................................................................................................................................TGGGTTCAAGCGGTTCTCCTGCCTCAGCCTCG.................................. 321.000.00--1.00-----------------------------------------------------
........................................................................................................................................GGTTGGAGTGCAGTGGTGCGATGAGC........................................................................................ 261.000.00-1.00------------------------------------------------------
.................................................................................................................................TCGCCCAGGTTGGAGTGCAGTGCG................................................................................................. 241.000.001.00-------------------------------------------------------
.......................................................................................................................................................................................................................CCAAGTAGCTGGGATTACCTCT............. 221.000.00----------------------------------------------------1.00---
........................................................................................................................................................................................TGGGTTCAAGCGGTTCTCCTGCCTCGAG...................................... 281.000.00-1.00------------------------------------------------------
.............................................................................................................................................................TCTCTGTTCACTGCAACCTCTGCCTCCTCC............................................................... 301.000.001.00-------------------------------------------------------
..............................................................................................................................................................................GCAGGAGAACCGCTTGAACCCAGGAGGCAGAG............................................ 3201.001.00------1.00-------------------------------------------------
.....................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCAAGCTCT.................................................... 331.000.00-----------------------------1.00--------------------------
....................................................................................................................................................................................................GTTCTCCTGCCTCAGCCTTGGCT............................... 231.000.001.00-------------------------------------------------------
.........................................................................................GTTTTTTTATTTTTTTTTTTG............................................................................................................................................ 211.000.00------------1.00-------------------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTA................................................... 271.000.001.00-------------------------------------------------------
........................................................................................................................................................................................TGGGTTCAAGCGGTTCTCCTGCCTCAAC...................................... 281.000.00-1.00------------------------------------------------------
..........................................................................................................................................................................CAACCTCTGCCTCCTGGGTTCAAGCGGTAAG................................................. 311.000.001.00-------------------------------------------------------
.............................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAGCGGTCTT................................................. 281.000.001.00-------------------------------------------------------
..........................................................................................................................................................................................................CTGCCTCAGCCTTCCAAGTAGTT......................... 231.000.00-------------------------------------------1.00------------
..............................................................................................................................................................................................................................GCTGGGATTACAGGCGTGCACAGG.... 241.000.001.00-------------------------------------------------------
..................................................................................................................................................................................................CGGTTCTCCTGCCTCAGCCTTTTTC............................... 251.000.00-1.00------------------------------------------------------
...................................................................................................................................................................TTCACTGCAACCTCTGCCTCCTGGGTTT........................................................... 281.000.00------------------1.00-------------------------------------
....................................................................................TTTTTGTTTTTTTATTTTTTTTTTTT............................................................................................................................................ 261.000.00---1.00----------------------------------------------------
...........................................................................................................................................................................................GGAGAACCGCTTGAAC............................................... 1601.001.00----1.00---------------------------------------------------
..................................................................................................................................................................................................CGGTTCTCCTGCCTCAGCCTGGTG................................ 241.000.00-1.00------------------------------------------------------
...............................................................................................................................TGTCGCCCAGGTTGGAC.......................................................................................................... 171.000.00----1.00---------------------------------------------------
......................................................................................................................................................................................................TCTCCTGCCTCAGCCTTCCACCGC............................ 241.000.00-1.00------------------------------------------------------
.................................................................................................................................TCGCCCAGGTTGGAGTGCAGTGA.................................................................................................. 231.000.00------------------------------------------1.00-------------
......................................................................................................................................................................................CCTGGGTTCAAGCGGTTCTCCTGCCTCAGCCGGGC................................. 351.000.00-------1.00------------------------------------------------
......................................................................................................................................................................................................TCTCCTGCCTCAGCCTTCCAAGTACG.......................... 261.000.00---------------------------------1.00----------------------
..................................................................................................................................................................GTTCACTGCAACCTCTGCCTCCTGGGTTCAAGTCTG.................................................... 361.000.00-----------------------1.00--------------------------------
..........................................................................................................................................................................CAACCTCTGCCTCCTGGGTTCAAGCGGTTCTA................................................ 321.000.001.00-------------------------------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTTCGTG............................................... 311.000.00-1.00------------------------------------------------------
.............................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAAT....................................................... 221.000.00------1.00-------------------------------------------------
.....................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCT.......................................................... 271.000.00------1.00-------------------------------------------------
...................................................................................................................................................................................................GGTTCTCCTGCCTCAGCCTTCCAAACG............................ 271.000.00-1.00------------------------------------------------------
.......................................................................................................................................................................................................CTACTTGGAAGGCTGAGGCAGGAG........................... 2401.001.00--------------1.00-----------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAAATT.................................... 221.000.00-----------------------------------1.00--------------------
........................................................................................................................................................................TGCAACCTCTGCCTCCTGGGTTCAAGCGGTTGA................................................. 331.000.00--------------------------------------1.00-----------------
.....................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCTC......................................................... 281.000.00-1.00------------------------------------------------------
.........................................................................................................................................................................................................CCTGCCTCAGCCTTCCAAGTCGGG......................... 241.000.001.00-------------------------------------------------------
......................................................................................................................................................................................................TCTCCTGCCTCAGCCTTCCAAGTCCAC......................... 271.000.00-1.00------------------------------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTTCG................................................. 291.000.001.00-------------------------------------------------------
.............................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAGCGGTGT.................................................. 271.000.001.00-------------------------------------------------------
.............................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAGAA...................................................... 231.000.00-------------------------------1.00------------------------
.......................................................................................................................................................................................................GCTACTTGGAAGGCTGAGGCAGGAG.......................... 2501.001.00------------------------------------------------1.00-------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTCGC................................................. 291.000.00-1.00------------------------------------------------------
....................................................................................................................................................................................................GTTCTCCTGCCTCAGCCTTCCAAGTAGCTAGC...................... 321.000.00-1.00------------------------------------------------------
...........................................................................................................................................................................AACCTCTGCCTCCTGGGTTCAAGCGGTTTCCC............................................... 321.000.00-1.00------------------------------------------------------
..................................................................................................................................................................................................CGGTTCTCCTGCCTCAGCCGAG.................................. 221.000.00------------------------------------------------------1.00-
.........................................................................................................................................................................GCAACCTCTGCCTCCTGGGTTCAAGCGGTCG.................................................. 311.000.001.00-------------------------------------------------------
.......................................................................................................................................................................................................ACTTGGAAGGCTGAGGCAGGAG............................. 2201.001.00---------------------1.00----------------------------------
.............................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAGCGGTCCGC................................................ 291.000.001.00-------------------------------------------------------
...................................................................................................................................................................................................GGTTCTCCTGCCTCAGCCTTCCAAGTTGCT......................... 301.000.00-1.00------------------------------------------------------
...........................................................................................................................................................................................................................GTAGCTGGGATTACAGGCGTGCACCCGA... 281.000.00-------1.00------------------------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGTTCTGC............................................... 311.000.001.00-------------------------------------------------------
.....................................................................................TTTTGTTTTTTTATTTTTTTTT............................................................................................................................................... 221.000.00------------1.00-------------------------------------------
......................................................................................................................................................................................................TGGAAGGCTGAGGCAGGAGA................................ 2001.001.00--------------1.00-----------------------------------------
..............................................................................................................................................................................CTCTGCCTCCTGGGTTCAAGCGGTTCTACGG............................................. 311.000.00-1.00------------------------------------------------------
.................................................................................................................................................................................................................ATCCCAGCTACTTGGAAGGCT.................... 2101.001.00----------1.00---------------------------------------------
................................................................................................................................................................................................AGCGGTTCTCCTGCCTCAGCCTCGG................................. 251.000.00-1.00------------------------------------------------------
......................................................................................................................................................................ACTGCAACCTCTGCCTCCTGTTT............................................................. 231.000.00-----1.00--------------------------------------------------
...........................................................................................AAAAAAAAAAATAAAAAA............................................................................................................................................. 1801.001.00---------1.00----------------------------------------------
......................................................................................TTTGTTTTTTTATTTTTTTTTTTG............................................................................................................................................ 241.000.00------------1.00-------------------------------------------
.................................................................................................................................................................................................GCGGTTCTCCTGCCTCAGCCTTCCAACT............................. 281.000.001.00-------------------------------------------------------
..................................................................................................................................................................................................................TCCCAGCTACTTGGAAGGC..................... 1901.001.00--------1.00-----------------------------------------------
...........................................................................................................................................................................................GTTCAAGCGGTTCTCCTGCCTGCCC...................................... 251.000.00-1.00------------------------------------------------------
............................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAAGCGGCG................................................... 271.000.00-1.00------------------------------------------------------
.................................................................................................................................................................................................GCGGTTCTCCTGCCTCAGCCTTC.................................. 231.000.00-1.00------------------------------------------------------
.................................................................................................................................................................................................GCGGTTCTCCTGCCTCAGCCTAAG................................. 241.000.00-1.00------------------------------------------------------
..................................................................................................................................CGCCCAGGTTGGAGTGCAGTTTT................................................................................................. 231.000.00---------------------------------------------1.00----------
..................................................................................................................................................................................GCCTCCTGGGTTCAAGCGGTTCTCCTGCCTGC........................................ 321.000.001.00-------------------------------------------------------
............................................................................................................................................................................................TGAGGCAGGAGAACCGCTTGAA........................................ 2201.001.00-----------------1.00--------------------------------------
............................................................................................................AACCTGGGCGACAAGAGTGAGACTCTGTCTCA.............................................................................................................. 3240.500.500.50-------------------------------------------------------
.......................................................................................................................................................................................AAGGCTGAGGCAGGAGAACCGCTTGAACCCAG................................... 3270.140.14-0.14------------------------------------------------------
..............................................................................................................................................................................................TACTTGGAAGGCTGAGGCAGGAGAACCGCTTG............................ 3280.120.12-------------------------------------------------------0.12