ID: uc003wig.3_intron_10_0_chr7_150715138_r
GENE: (4)
chr7:150715088-150715430-


(2)
B-CELL
(18)
BREAST
(8)
CELL-LINE
(11)
CERVIX
(5)
HELA
(3)
OTHER
(30)
SKIN
(1)
TESTES

Sense strand
GCAGGGACCGCGCCTACCGGCAGATGGCGCAGCTGCTGCAGTACCGAGCGGTGAGGGTGGGCGCGACGGCGGGCTGAGGAGGAAGTTGTGGGGTCTGTCTGCGCGGAGGGTCTGTCTGCGCGGAGGGTCTGTCTGGGAGAGGGCATGAGACAAACGGACTATACCAGGAGTCTAGGGAGTGACTGGGTGGGGAGGCTTCTTGCCCTGGCGAGGGTCGCTGGGGACTGCTTGGTCCTGATAACGCGCGTGGGCCCCTCAGCGACCCCTGCTCAGCCTCACCGCTGCTTCCCCAGGTCTCCCTCCTGGAGGAGCTCCTGTCCCCGCTCCTCACCCCGCTGTTTCT
......................................................................((((.((((((..........((((((((((((((((.......))))))))))..((((((((......)))))...)))...)))))).((((...((((........)))).))))......)))))))))).((((.....))))............................................................................................................................
.....................................................................70....................................................................................................................................................220.........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040018(GSM532903)
G701N. (cervix)
GSM532878(GSM532878)
G691T. (cervix)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
GSM532888(GSM532888)
G761T. (cervix)
SRR189787GSM532883(GSM532883)
G871N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532871(GSM532871)
G652N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................................................CTTGCCCTGGCGAGGCAG...............................................................................................................................181298.009.00133.007.0046.0025.0017.005.006.002.003.002.006.004.00-5.001.00-4.004.002.00--2.002.00--1.00-1.00-1.002.001.002.001.001.00--1.001.00------1.00--1.00-1.001.001.001.00---------1.001.00--1.00-------1.00--
......................................................................................................................................................................................................CTTGCCCTGGCGAGGCA................................................................................................................................171252.009.0041.00122.0019.003.002.0014.005.005.004.005.00-1.005.00-3.00---1.003.002.00-1.00---1.001.002.00--1.00---2.001.00--1.00----1.00-1.00-------1.00---1.001.00---------1.00--1.00-----
......................................................................................................................................................................................................CTTGCCCTGGCGAGGC.................................................................................................................................16113.009.004.00-7.00------------------------------1.00----------------------------------1.00---------
......................................................................................................................................................................................................CTTGCCCTGGCGAGG..................................................................................................................................1519.009.00-5.00-----2.00--------------------------------------------------------------1.00---1.00---
......................................................................................................................................................................................................CTTGCCCTGGCGAGGCAGA..............................................................................................................................1915.009.00---1.002.00--------------------1.001.00---------------------------------------------------
......................................................................................................................................................................................................CTTGCCCTGGCGAGGA.................................................................................................................................1613.009.00-3.00----------------------------------------------------------------------------
..........................................................................TGAGGAGGAAGTTGTATAG..........................................................................................................................................................................................................................................................192.000.00---------------2.00--------------------------------------------------------------
..............................................................................................CTGTCTGCGCGGAGGGTCTTT....................................................................................................................................................................................................................................212.000.00------------------------2.00-----------------------------------------------------
......................................................................................................................................................................................................CTTGCCCTGGCGAGGCAA...............................................................................................................................1812.009.00--------------1.00------1.00--------------------------------------------------------
.....................AGATGGCGCAGCTGCTGCAGTACCGAGCG.....................................................................................................................................................................................................................................................................................................2911.001.00------------------------------------------------------------------1.00-----------
............................................................................................................................................................................................GGGGAGGCTTCTTGCCTTTT.......................................................................................................................................201.000.00------------------------------------------1.00-----------------------------------
..................................................................................................CTGCGCGGAGGGTCTGTCTGCGCGG............................................................................................................................................................................................................................2511.001.00----------------------------------1.00-------------------------------------------
..............................................................................................................................................................................................................................................................................CAGCCTCACCGCTGCTTCCCCAGA.................................................241.000.00-------------------------------------------------------1.00----------------------
..................................................................CGGCGGGCTGAGGAGGAAGTT................................................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------1.00---------------------
..................................................................................................................................................................................................................................GCTTGGTCCTGATAACCA...................................................................................................181.000.00-------------------------------------------------------------------------1.00----
......................................................................................................................................................................................................CTTGCCCTGGCGAGGAT................................................................................................................................1711.009.00-1.00----------------------------------------------------------------------------
..........................................................................TGAGGAGGAAGTTGTGGCTT.........................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------1.00-----------------
.....................................................................................................................................................................................................TCTTGCCCTGGCGAGGCA................................................................................................................................181.000.00--------1.00---------------------------------------------------------------------
...............................................................................................................................TCTGTCTGGGAGAGGGCATGAG..................................................................................................................................................................................................2211.001.00-----------------------------------------1.00------------------------------------
..............................................................................................................TCTGTCTGCGCGGAGGGT.......................................................................................................................................................................................................................1821.001.00-------------------------------------------------1.00----------------------------
..............................AGCTGCTGCAGTACCGAGCG.....................................................................................................................................................................................................................................................................................................2011.001.00-----------------------1.00------------------------------------------------------
......................................................................................................................................................................................................CTTGCCCTGGCGAGGAAG...............................................................................................................................1811.009.00-----------1.00------------------------------------------------------------------
........................................................................................................................................GAGAGGGCATGAGACTT..............................................................................................................................................................................................171.000.00-----------------------------------------------1.00------------------------------
......................................................................................................................................................................................................CTTGCCCTGGCGAGGCAAA..............................................................................................................................1911.009.00--------------------1.00---------------------------------------------------------
.........................................................................................................GAGGGTCTGTCTGCGCGG............................................................................................................................................................................................................................1811.001.00----------------------------------------1.00-------------------------------------
...........................................................................................................................................................................................................................................................................................GCTTCCCCAGGTCTCCATA.........................................191.000.00-------------------------------------------------------------1.00----------------
..................................................GTGAGGGTGGGCGCGCGG...................................................................................................................................................................................................................................................................................181.000.00---------------1.00--------------------------------------------------------------
...................................................................GGCGGGCTGAGGAGGATT..................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------------------------1.00------------
......................................................................................................................................GGGAGAGGGCATGAGACAAACG...........................................................................................................................................................................................2211.001.00-----------------------------1.00------------------------------------------------
...........................................................................GAGGAGGAAGTTGTGGAGCT........................................................................................................................................................................................................................................................201.000.00---------------------------------------------------------1.00--------------------
....................................................................................................................................................................................................................................TTGGTCCTGATAACG....................................................................................................1520.500.50----------------------------------------------------------------------------0.50-
.....................................................................................................................................................................................................................................TGGTCCTGATAACGC...................................................................................................1520.500.50-----------------------0.50------------------------------------------------------

Antisense strand
GCAGGGACCGCGCCTACCGGCAGATGGCGCAGCTGCTGCAGTACCGAGCGGTGAGGGTGGGCGCGACGGCGGGCTGAGGAGGAAGTTGTGGGGTCTGTCTGCGCGGAGGGTCTGTCTGCGCGGAGGGTCTGTCTGGGAGAGGGCATGAGACAAACGGACTATACCAGGAGTCTAGGGAGTGACTGGGTGGGGAGGCTTCTTGCCCTGGCGAGGGTCGCTGGGGACTGCTTGGTCCTGATAACGCGCGTGGGCCCCTCAGCGACCCCTGCTCAGCCTCACCGCTGCTTCCCCAGGTCTCCCTCCTGGAGGAGCTCCTGTCCCCGCTCCTCACCCCGCTGTTTCT
......................................................................((((.((((((..........((((((((((((((((.......))))))))))..((((((((......)))))...)))...)))))).((((...((((........)))).))))......)))))))))).((((.....))))............................................................................................................................
.....................................................................70....................................................................................................................................................220.........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040018(GSM532903)
G701N. (cervix)
GSM532878(GSM532878)
G691T. (cervix)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
GSM532888(GSM532888)
G761T. (cervix)
SRR189787GSM532883(GSM532883)
G871N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532871(GSM532871)
G652N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.........................................................................................CAGACAGACCCTCCGCGCAGACAGACCCC................................................................................................................................................................................................................................. 2911.001.00-------------------------------------------1.00----------------------------------
................................................................................CAGACAGACCCCACAACTTCC.................................................................................................................................................................................................................................................. 2111.001.00-----------------------------------------------------------------------1.00------
......................................................................................................................................GGGAGAGGGCATGAGAGC............................................................................................................................................................................................... 181.000.00---------------1.00--------------------------------------------------------------
................................................................................CAGACCCCACAACTTCC...................................................................................................................................................................................................................................................... 1711.001.00-----------------------1.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................GGGACAGGAGCTCCTCCAGGAGGG...................... 2411.001.00--------------------------------------------------------------1.00---------------
.................................................................................................................................................................................................................................................................................................................GGGACAGGAGCTCCTC...................... 1640.250.25-----------------------------------------------------------------------------0.25