ID: uc003vrp.1_intron_2_0_chr7_134132134_r.3p
GENE: AKR1B1(7)
chr7:134132084-134132333-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(4)
BRAIN 		(17)
CELL-LINE 		(2)
FIBROBLAST 		(5)
HEART 		(6)
HELA 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGCGCAGGACTCTGGAGTCAGATCTGGACCTGAATGCGTCGCCTACCTGTTGCTAGCTGTGACCTGACATCTTGGAGCCCCTCTCTGATCACCTGTGGAGTTCTAGCACGTCCTTCTGCAGGTTGTGTGTGTGAGAGACTGAGATGATGGGTGCGAGTGCCTGGCATGTATACACACTCACTGTCTCCTTGGGCTCACAGGTCCTGATCCGGTTCCCCATGCAGAGGAACTTGGTGGTGATCCCCAAGTC
...................................................................................................((.((.(((((((..(((.(((.................)))))).)))..)))).)).))..........................................................................................
..................................................................................................99...........................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................AGAGACTGAGATGATGGGTGCGA..............................................................................................2316.006.00--3.00----------1.00--1.00---------1.00---------------------
.................................................................................................................................TGTGAGAGACTGAGATGATGGG...................................................................................................2215.005.001.00---1.00-------1.00-------1.00-------1.00-------------------
.................................................................................................................................TGTGAGAGACTGAGATGATGGGA..................................................................................................2314.005.001.002.00-----------------------------1.00----------------
...................................................................................................................................TGAGAGACTGAGATGATGGGTG.................................................................................................2214.004.00--------2.00------------1.00---1.00----------------------
.....................................................................................................................................AGAGACTGAGATGATGGGTGCG...............................................................................................2213.003.00---2.00---------------1.00----------------------------
.................................................................................................................................TGTGAGAGACTGAGATGATGGA...................................................................................................2213.001.001.002.00----------------------------------------------
.....................................................................................................................................AGAGACTGAGATGATGGGTGCGAA.............................................................................................2413.006.00-----3.00------------------------------------------
.....................................................................................................................................AGAGACTGAGATGATGGGTGCGT..............................................................................................2312.003.00--1.00-1.00-------------------------------------------
...............................................................................................................................TGTGTGAGAGACTGAGATGATGG....................................................................................................2312.002.00-1.00----------------------1.00-----------------------
.......................................................................................................TAGCACGTCCTTCTGCAG.................................................................................................................................1812.002.00---------2.00--------------------------------------
..............................................................................CCCTCTCTGATCACCTGTGG........................................................................................................................................................2012.002.00----------2.00-------------------------------------
.....................................................................................................................................AGAGACTGAGATGATGGGTG.................................................................................................2012.002.00------1.00------------------------------1.00----------
.................................................................................................................................TGTGAGAGACTGAGATGATG.....................................................................................................2011.001.001.00-----------------------------------------------
................................................................................................................................GTGTGAGAGACTGAGATGATGGG...................................................................................................2311.001.00------1.00-----------------------------------------
.....................................................................................................................................AGAGACTGAGATGATGGGT..................................................................................................1911.001.00----1.00-------------------------------------------
...................................................................................................................................TGAGAGACTGAGATGATGGG...................................................................................................2011.001.00-----------------------------------1.00------------
............................................................................................................................................................................................................................GCAGAGGAACTTGGTGGTGAT.........2131.001.00------------------1.00-----------------------------
.....................................................................................................................................AGAGACTGAGATGATGGGTGCT...............................................................................................2211.001.00---------------------------------1.00--------------
..............................................................................................................TCCTTCTGCAGGTTGTGTGTGTGGG...................................................................................................................251.000.00--------------1.00---------------------------------
...................................................GCTAGCTGTGACCTGACATCTTGGAGC............................................................................................................................................................................2711.001.00----------------------1.00-------------------------
.................................................................................................................................TGTGAGAGACTGAGATGATGGGTGT................................................................................................251.000.00------------------------------1.00-----------------
.................................................................................................................................TGTGAGAGACTGAGATGATGG....................................................................................................2111.001.001.00-----------------------------------------------
......................................................AGCTGTGACCTGACATCTTGGAGCC...........................................................................................................................................................................2511.001.00--------------------------------1.00---------------
...................................................................................................................................................................................ACTGTCTCCTTGGGCTCACAG..................................................2111.001.00-----------------------------1.00------------------
.................................................................................................................................TGTGAGAGACTGAGATGATGGT...................................................................................................2211.001.00---------------1.00--------------------------------
.....................................................................................................................................AGAGACTGAGATGATGGGTGC................................................................................................2111.001.00------------------------------------1.00-----------
.................................................................................................................................TGTGAGAGACTGAGATGAGGG....................................................................................................211.000.00----------------------------------1.00-------------
........................................................................................................AGCACGTCCTTCTGCAG.................................................................................................................................1711.001.00---1.00--------------------------------------------
...............................................................................................................................................................................................................................GAGGAACTTGGTGGTGATC........1930.670.67-------0.67----------------------------------------
..........................................................................................................................................................................................................................ATGCAGAGGAACTTGGTG..............1830.670.67-----------------0.33----------------------0.33-------
..........................................................................................................................................................................................................................ATGCAGAGGAACTTGGTGGTGA..........2230.330.33------------------------------------------0.33-----
...............................................................................................................................................................................................................................GAGGAACTTGGTGGTGATCC.......2030.330.33------------0.33-----------------------------------
..............................................................................................................................................................................................................................AGAGGAACTTGGTGGTGAT.........1930.330.33-------0.33----------------------------------------
.........................................................................................................................................................................................................................CATGCAGAGGAACTTGGTGGTG...........2230.330.33------0.33-----------------------------------------
.........................................................................................................................................................................................................................CATGCAGAGGAACTTGGTGGT............2130.330.33-------0.33----------------------------------------
................................................................................................................................................................................................................................AGGAACTTGGTGGTGATCCCCAAGT.2530.330.33-------------------------------------------0.33----
.............................................................................................................................................................................................................................CAGAGGAACTTGGTGGTGAT.........2030.330.33-------0.33----------------------------------------
........................................................................................................................................................................................................................CCATGCAGAGGAACTTGGTG..............2030.330.33----------------------------------------0.33-------
..........................................................................................................................................................................................................................ATGCAGAGGAACTTGGTGGT............2030.330.33-------0.33----------------------------------------
......................................................................................................................................................................................................................CCCCATGCAGAGGAACTTGG................2030.330.33-----------------------------------------0.33------
.........................................................................................................................................................................................................................CATGCAGAGGAACTTGGTG..............1930.330.33-----------------0.33------------------------------
............................................................................................................................................................................................................................GCAGAGGAACTTGGTGGTGATCCC......2430.330.33-----------------0.33------------------------------
......................................................................................................................................................................................................................CCCCATGCAGAGGAACTT..................1830.330.33--------------------------------------------0.33---
.........................................................................................................................................................................................................................CATGCAGAGGAACTTGGTGG.............2030.330.33------------0.33-----------------------------------
.......................................................................................................................................................................................................................CCCATGCAGAGGAACTTGGTGG.............2230.330.33---------------0.33--------------------------------
.............................................................................................................................................................................................................................CAGAGGAACTTGGTGGTG...........1840.250.25-------0.25----------------------------------------
.........................................................................................................................................................................................................................CATGCAGAGGAACTTGGT...............1850.200.20-------0.20----------------------------------------
..........................................................................................................................................................................................................................ATGCAGAGGAACTTGG................1660.170.17---0.17--------------------------------------------
..........................................................................................................................................................................................................................ATGCAGAGGAACTTGGACC.............1960.170.17------0.17-----------------------------------------
.............................................................................................................................................................................................................................CAGAGGAACTTGGTGG.............1670.140.14----------------0.14-------------------------------
.........................................................................................................................................................................................................................CATGCAGAGGAACTTG.................1680.120.12---0.12--------------------------------------------
..CGCAGGACTCTGGAG.........................................................................................................................................................................................................................................1590.110.11-----------------------------------------------0.11

Antisense strand
AGCGCAGGACTCTGGAGTCAGATCTGGACCTGAATGCGTCGCCTACCTGTTGCTAGCTGTGACCTGACATCTTGGAGCCCCTCTCTGATCACCTGTGGAGTTCTAGCACGTCCTTCTGCAGGTTGTGTGTGTGAGAGACTGAGATGATGGGTGCGAGTGCCTGGCATGTATACACACTCACTGTCTCCTTGGGCTCACAGGTCCTGATCCGGTTCCCCATGCAGAGGAACTTGGTGGTGATCCCCAAGTC
...................................................................................................((.((.(((((((..(((.(((.................)))))).)))..)))).)).))..........................................................................................
..................................................................................................99...........................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................CTGAGATGATGGGTGCG............................................................................................... 171.000.00--------------------------------------1.00---------
..........................................................................GAGCCCCTCTCTGATGTG.............................................................................................................................................................. 181.000.00-----------------------1.00------------------------
................................................................................................GGAGTTCTAGCACGTT.......................................................................................................................................... 161.000.00---------------------------------------1.00--------
.................................................................................................................................TGTGAGAGACTGAGATGATTG.................................................................................................... 211.000.00---------------------------1.00--------------------
.................................................................................................GACGTGCTAGAACTC.......................................................................................................................................... 1520.500.50-------------0.50----------------------------------
........................................CTAGCAACAGGTAGGC.................................................................................................................................................................................................. 1630.330.33--------------0.33---------------------------------
............................................................................................................................................................................................................................ACCACCAAGTTCCTCTGC............ 1840.250.25---------------------------------------------0.25--
............................................................................................................................................................................................................................CCACCAAGTTCCTCTGC............. 1740.250.25----------------------------------------------0.25-