ID: uc003vda.1_intron_1_0_chr7_105173317_f.3p
GENE: RINT1(2)
chr7:105176812-105177061+


(2)
AGO1.ip
(1)
AGO2.ip
(1)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(4)
OTHER
(2)
SKIN

Sense strand
GCCAGGCTAGTCTTAAACTCCTGGCCTCAGGTGATGCACCTGCCTCAGCCTCCCAAAGTGCTGGGATCACAGGTGTGAGCCACCGTGCCTGGCAAAATTATTAACTTTTGAAGGCAGATAAACTGCTTTTATATGTTTTATATTTTCTTTAACTCCATAGTACTTAGTGGCGTTGAGTAATTGTTATTCTTTTGTTGTAGGTGACATAAATGTTACAGTTCTTATTGGAAGTAAACAAGTCAGTGAAGGT
..........................................................(((..((..(((.((((.....)))))))))..)))..............(((((((((.....))))))))).......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR040028(GSM532913)
G026N. (cervix)
SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925PAZD5GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................TGCTGGGATCACAGGTTGAG............................................................................................................................................................................203.000.00-3.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGTGACA..........................................................................................................................................................................252.000.00-2.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGTGGGAG.........................................................................................................................................................................2602.001.002.00------------------
.......................................................AAGTGCTGGGATCACAGGGGCG.............................................................................................................................................................................222.000.001.001.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGTA.........................................................................................................................................................................262.000.00-2.00-----------------
..........................................................TGCTGGGATCACAGGTGTGAGCCACGC.....................................................................................................................................................................272.000.002.00------------------
.......................................................AAGTGCTGGGATCACAGGTGTGGGCG.........................................................................................................................................................................2602.001.001.00-----------1.00------
........................................................AGTGCTGGGATCACAGGTGTGATG..........................................................................................................................................................................242.000.00-2.00-----------------
......................................................................................................................TAAACTGCTTTTATACGG..................................................................................................................181.000.00-----1.00-------------
..........................................................TGCTGGGATCACAGGTGTGAGCCGTGC.....................................................................................................................................................................271.000.00-1.00-----------------
.....................TGGCCTCAGGTGATGCACCAGC...............................................................................................................................................................................................................221.000.00--1.00----------------
........................................................AGTGCTGGGATCACAGGTGTGACTAC........................................................................................................................................................................261.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGGGCC.............................................................................................................................................................................221.000.001.00------------------
............................AGGTGATGCACCTGCCTCAGCCCC......................................................................................................................................................................................................241.000.001.00------------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGCAACC......................................................................................................................................................................291.000.00-1.00-----------------
................................................................................................................................TTATATGTTTTATATAATC.......................................................................................................191.000.00---------------1.00---
........................................................AGTGCTGGGATCACAGGTGTGAGCCTCTG.....................................................................................................................................................................291.000.001.00------------------
.................................................................ATCACAGGTGTGAGCCGGCC.....................................................................................................................................................................201.000.001.00------------------
.................................................................ATCACAGGTGTGAGCCACCGTGCCTGGCCGGG.........................................................................................................................................................321.000.00-1.00-----------------
......................................................AAAGTGCTGGGATCACAGGTGTGGGAG.........................................................................................................................................................................271.000.001.00------------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGCGACC......................................................................................................................................................................291.000.001.00------------------
..........................................................TGCTGGGATCACAGGTGTGAGCCACGTGC...................................................................................................................................................................291.000.001.00------------------
.................................................................ATCACAGGTGTGAGCCACCGTGCTCGG..............................................................................................................................................................271.000.001.00------------------
................................................CCTCCCAAAGTGCTGGGATCACAGGTGTGCGC..........................................................................................................................................................................321.000.001.00------------------
.......................................................AAGTGCTGGGATCACAGGGACG.............................................................................................................................................................................221.000.00-1.00-----------------
....................................................................ACAGGTGTGAGCCACCGTGCCTGGGG............................................................................................................................................................261.000.001.00------------------
........................................................AGTGCTGGGATCACAGGTGTAGCC..........................................................................................................................................................................241.000.001.00------------------
.....................................................................CAGGTGTGAGCCACCGTGCCTGGCAGCGT........................................................................................................................................................291.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGTGTGCT.........................................................................................................................................................................2601.001.001.00------------------
..............................................AGCCTCCCAAAGTGCTGGGATCTGGG..................................................................................................................................................................................261.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGGGAG.......................................................................................................................................................................281.000.00-1.00-----------------
........................................................AGTGCTGGGATCACAGGTGTGAGGCAG.......................................................................................................................................................................271.000.00-1.00-----------------
........................................................AGTGCTGGGATCACAGGTGTGACG..........................................................................................................................................................................241.000.00-1.00-----------------
..........................................................TGCTGGGATCACAGGTGTGAGCACTG......................................................................................................................................................................2601.001.00-1.00-----------------
..........................................................TGCTGGGATCACAGGTGTGAGTGG........................................................................................................................................................................241.000.00-1.00-----------------
........................................................AGTGCTGGGATCACAGGTGTGAGCCACCCCAC..................................................................................................................................................................321.000.001.00------------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGCCTTGC.....................................................................................................................................................................301.000.001.00------------------
........................................................AGTGCTGGGATCACAGGTGTGAGGGAG.......................................................................................................................................................................271.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGTGATTC.........................................................................................................................................................................261.000.001.00------------------
.......................................................AAGTGCTGGGATCACAGGTGTG.............................................................................................................................................................................2201.001.00--------1.00----------
........................................................AGTGCTGGGATCACAGGTGTGAGCAAAC......................................................................................................................................................................281.000.00-1.00-----------------
..........................................................TGCTGGGATCACAGGTGTGAGC..........................................................................................................................................................................2201.001.00---1.00---------------
......................................................AAAGTGCTGGGATCACAGGTGTGTGAG.........................................................................................................................................................................271.000.00-1.00-----------------
....................................................................ACAGGTGTGAGCCACCGTGCCTGGGAG...........................................................................................................................................................271.000.00-1.00-----------------
..................................................................TCACAGGTGTGAGCCACCGTGCCGGCC.............................................................................................................................................................271.000.001.00------------------
.................................................................ATCACAGGTGTGAGCCACCGTGCCGG...............................................................................................................................................................261.000.00-1.00-----------------
...................................................................CACAGGTGTGAGCCACCGTGCCTGGCCGAC.........................................................................................................................................................301.000.001.00------------------
..........................................................TGCTGGGATCACAGGTGTGAGCACCC......................................................................................................................................................................2601.001.001.00------------------
..........................................................TGCTGGGATCACAGGTGTGAGCCACCGTGCT.................................................................................................................................................................311.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGGTC..............................................................................................................................................................................211.000.00--1.00----------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGAA.........................................................................................................................................................................261.000.00-1.00-----------------
........................................................AGTGCTGGGATCACAGGTGTGAGCCTG.......................................................................................................................................................................271.000.00-1.00-----------------
........................................................AGTGCTGGGATCACAGGTGTGAGCAAAG......................................................................................................................................................................281.000.00-1.00-----------------
..........................................................TGCTGGGATCACAGGTGTGAGGGAG.......................................................................................................................................................................251.000.00-1.00-----------------
........................................................AGTGCTGGGATCACAGGTGTGATCTG........................................................................................................................................................................261.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGTGGGGG...........................................................................................................................................................................2401.001.001.00------------------
...............................................................................................................................................................................................................AAATGTTACAGTTCTTATTGG......................2111.001.00--------------1.00----
........................................................AGTGCTGGGATCACAGGTGTGAGCCACCTG....................................................................................................................................................................301.000.001.00------------------
........................................................AGTGCTGGGATCACAGGTGTGAGCCACCCCT...................................................................................................................................................................311.000.001.00------------------
.......................................................AAGTGCTGGGATCACAGGTGTGAGCCACCCTC...................................................................................................................................................................321.000.00-1.00-----------------
.......................................................AAGTGCTGGGATCACAGGTG...............................................................................................................................................................................2001.001.00---------1.00---------
........................................................AGTGCTGGGATCACAGGTGTGACCCC........................................................................................................................................................................261.000.00-1.00-----------------
................................................................GATCACAGGTGTGAGCCACCGTGCCTGGCTG...........................................................................................................................................................311.000.001.00------------------
....................................................................ACAGGTGTGAGCCACCGTGCCTGGCACGG.........................................................................................................................................................291.000.001.00------------------
........................................................AGTGCTGGGATCACAGGTGTGAGACCC.......................................................................................................................................................................271.000.001.00------------------
.............................................................TGGGATCACAGGTGTGAGCCACCGTGA..................................................................................................................................................................271.000.00-1.00-----------------
.................................................................ATCACAGGTGTGAGCCACCGTGCCGGCC.............................................................................................................................................................281.000.001.00------------------
..................................TGCACCTGCCTCAGCCTCCCAAAGTGGG............................................................................................................................................................................................281.000.001.00------------------
........................................................AGTGCTGGGATCACAGGGACA.............................................................................................................................................................................211.000.001.00------------------
........................................................AGTGCTGGGATCACAGGTGTGAGCAACC......................................................................................................................................................................281.000.001.00------------------
.................................................................................................................................................................................TAATTGTTATTCTTTTG........................................................1750.400.40----------------0.40--
.............................................................................................................................................................................................................................TTATTGGAAGTAAACA.............1650.200.20-----------------0.20-
................................................................................................................................................................................GTAATTGTTATTCTTTT.........................................................1770.140.14------------------0.14

Antisense strand
GCCAGGCTAGTCTTAAACTCCTGGCCTCAGGTGATGCACCTGCCTCAGCCTCCCAAAGTGCTGGGATCACAGGTGTGAGCCACCGTGCCTGGCAAAATTATTAACTTTTGAAGGCAGATAAACTGCTTTTATATGTTTTATATTTTCTTTAACTCCATAGTACTTAGTGGCGTTGAGTAATTGTTATTCTTTTGTTGTAGGTGACATAAATGTTACAGTTCTTATTGGAAGTAAACAAGTCAGTGAAGGT
..........................................................(((..((..(((.((((.....)))))))))..)))..............(((((((((.....))))))))).......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR040028(GSM532913)
G026N. (cervix)
SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925PAZD5GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................GTGTGAGCCACCGTGCCTGGCATGG......................................................................................................................................................... 252.000.002.00------------------
.....................................................................................................................................TGTTTTATATTTTCTTTAGAT................................................................................................ 211.000.00----1.00--------------
............................................................................GAGCCACCGTGCCTGGCAAACTG....................................................................................................................................................... 231.000.001.00------------------
..................................TTTGGGAGGCTGAGGCAGGTGCA................................................................................................................................................................................................. 2301.001.00-----------1.00-------
.................................................CTCCCAAAGTGCTGGGATCACAGGTGTCCCG.......................................................................................................................................................................... 311.000.001.00------------------
................ACTCCTGGCCTCAGGTGATGAAG................................................................................................................................................................................................................... 231.000.001.00------------------
..........................................................................GTGAGCCACCGTGCCTGGCAAAACCC...................................................................................................................................................... 261.000.00-1.00-----------------
..................................TGCACCTGCCTCAGCCTCCCAACC................................................................................................................................................................................................ 241.000.001.00------------------
..................................TGCACCTGCCTCAGCCTCCCAAAGTCC............................................................................................................................................................................................. 271.000.001.00------------------
.........................................................................TGTGAGCCACCGTGCCTGGCAAGGG........................................................................................................................................................ 251.000.001.00------------------
................................................ACCTGTGATCCCAGCACTTTGGGAGG................................................................................................................................................................................ 2601.001.00------1.00------------
....................................................................ACAGGTGTGAGCCACCGTTCGG................................................................................................................................................................ 221.000.00-------1.00-----------
............................AGGCAGGTGCATCACCT............................................................................................................................................................................................................. 1701.001.00-------------1.00-----
...................................GCACCTGCCTCAGCCTGTG.................................................................................................................................................................................................... 191.000.00----------1.00--------
.................CAGGTGCATCACCTGAGGCCAGGAG................................................................................................................................................................................................................ 2530.330.33-0.33-----------------