ID: uc003uzp.1_intron_2_0_chr7_102116718_r.3p
GENE: POLR2J(1)
chr7:102116668-102116917-


(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TTAGTACAGGCAGGGTTTTGCCATGTTGGGCAGGCTGGTCTTGAACTTCTGACCTCAGGTCATCCATCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCACGAGCCACCACACCTGGCCGGGAGGAGACAGGGTTTAGACTCAGGGTGGGAGGAGGGGAGCCCCTGCTCCTCATCTGTGGCCTCTGTGTCTTCCTAGGATCACCATTAACAAGGACACCAAGGTACCCAATGCCTGTTTATTCACCA
.........................................................................................(((((....(((((((((((((....((((.((....))...))))...........(((((((((.((((....)))).)))).)))))))))).)).)))))))))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM956925PAZD5SRR189785SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR343335SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)
......................................................................................TGTTGGGATTACAGGCACGAGCCAG...........................................................................................................................................255.000.003.002.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCGTGG............................................................................................................................3024.003.503.001.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCAC..............................................................................................................................284.000.002.002.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCCG..............................................................................................................................284.000.004.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCG...............................................................................................................................2723.503.503.50------------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCACGAGCTAGC..........................................................................................................................................283.000.00-3.00-----------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCGCTG.........................................................................................................................................273.000.002.001.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCCAG.............................................................................................................................293.000.002.001.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCCAC.............................................................................................................................293.000.002.001.00-----------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCCG..............................................................................................................................263.000.003.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCACAGCC.......................................................................................................................................273.000.003.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCGC..............................................................................................................................2823.003.503.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGCCGTGG............................................................................................................................312.000.002.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCG............................................................................................................................................242.000.00-2.00-----------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGTCCG...............................................................................................................................252.000.002.00------------------------------------------------------
...................................................................................AAGTGTTGGGATTACAGGCACGAGCCAG...........................................................................................................................................282.000.00-2.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCTCC.............................................................................................................................292.000.002.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCGTCG.........................................................................................................................................272.000.002.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCGCTG.........................................................................................................................................252.000.00-2.00-----------------------------------------------------
............................................................................................................................................................................................................ACCATTAACAAGGACACCAAGGTACCCAATG...............3131.671.67-----------------1.00---------------0.67---------------------
............................................................................................................................................................AGGGGAGCCCCTGCTCCTCATCTGTGGCCTC...............................................................3141.501.50------1.25---------------------------------------0.25--------
..........................................................................................................................................................................................................................CACCAAGGTACCCAATGC..............1831.331.33----------------1.33--------------------------------------
.................................................................................................................................................................................................................TAACAAGGACACCAAGGTACCCAATGCC.............2831.331.33----1.33--------------------------------------------------
......................................................................................................ACGAGCCACCACACCTGGCCGGGAGGAGACAGGG..................................................................................................................3441.251.251.000.25-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCACTC............................................................................................................................301.000.00-1.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTAGG.................................................................................................................................251.000.00-1.00-----------------------------------------------------
..............................................................................................TTACAGGCACGAGCCACCACACCTGGCCCACC............................................................................................................................321.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCTGC..............................................................................................................................281.000.001.00------------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCACGAGCCAGC..........................................................................................................................................281.000.001.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCGACT..........................................................................................................................................241.000.00-1.00-----------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCAAGCG...............................................................................................................................................231.000.001.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCTCTG.........................................................................................................................................271.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCTCGG.............................................................................................................................271.000.001.00------------------------------------------------------
.................................................................................................................................................AGGGTGGGAGGAGGGGAGCCCCTGCTCCCC...........................................................................301.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGGCCT..............................................................................................................................281.000.001.00------------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCACGAGCCAG...........................................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCGA..............................................................................................................................2821.003.50-1.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCCGG.............................................................................................................................291.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGTCAG..............................................................................................................................281.000.001.00------------------------------------------------------
............................................................................................................................................................AGGGGAGCCCCTGCTCCTCATCTGTGGCTTC...............................................................311.000.00------1.00------------------------------------------------
...........................................................TCATCCATCCACCTCAGCCTCCCGAG.....................................................................................................................................................................261.000.001.00------------------------------------------------------
.............................................................................CTCCCAAAGTGTTGGGATTACAGCAGC..................................................................................................................................................271.000.00--------------1.00----------------------------------------
......................................................................................................................................................................................................................AGGACACCAAGGTACCCAACA...............211.000.00-------------------1.00-----------------------------------
..............................................................................................TTACAGGCACGAGCCACACCG.......................................................................................................................................211.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTTTCC................................................................................................................................261.000.001.00------------------------------------------------------
..............................................................................................TTACAGGCACGAGCCACCACACCTGGCCCAGC............................................................................................................................321.000.00-1.00-----------------------------------------------------
.............................................................................................ATTACAGGCACGAGCCACCACACCTGGCCCAGC............................................................................................................................331.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCTGG..............................................................................................................................281.000.00-1.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGTGG................................................................................................................................261.000.00-1.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCAGCC.................................................................................................................................251.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCCCT.............................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACACT...................................................................................................................................231.000.00-1.00-----------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCACCACACCAAG..................................................................................................................................321.000.00---1.00---------------------------------------------------
...................................................................................AAGTGTTGGGATTACAGGCACGTA...............................................................................................................................................241.000.00---------------------------1.00---------------------------
.............................................................................................ATTACAGGCACGAGCCACCACACCTGGCCG...............................................................................................................................3021.001.001.00------------------------------------------------------
.......................................................................................................................................................................................................GGATCACCATTAACAAGGAA...............................201.000.00-----------1.00-------------------------------------------
..............................................................................................TTACAGGCACGAGCCACCACACCCAT..................................................................................................................................261.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACACG...................................................................................................................................231.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGCCTGC.............................................................................................................................301.000.001.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCACCACC.......................................................................................................................................271.000.00---1.00---------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCAAACC...............................................................................................................................................231.000.00-1.00-----------------------------------------------------
...................................................................................................................................................................................................................ACAAGGACACCAAGGTACCCAATGCCC............271.000.00---------1.00---------------------------------------------
.......................TGTTGGGCAGGCTGGTC..................................................................................................................................................................................................................1701.001.00-----1.00-------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCAGTG.........................................................................................................................................271.000.001.00------------------------------------------------------
.............................................................................................ATTACAGGCACGAGCCACCACACCTGGCCAC..............................................................................................................................311.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGACCG...............................................................................................................................271.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCTTGG.............................................................................................................................271.000.001.00------------------------------------------------------
......................ATGTTGGGCAGGCTGACTC.................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCTGGG............................................................................................................................301.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCTCC..............................................................................................................................281.000.00-1.00-----------------------------------------------------
.....................................................................................................................................................................................................................AAGGACACCAAGGTACCCAATGCCGT...........2631.000.331.00------------------------------------------------------
......................................................................................................ACGAGCCACCACACCTGGCCGGGGTG..........................................................................................................................261.000.001.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCGCCA.........................................................................................................................................251.000.001.00------------------------------------------------------
................................................................................................................................................................................TCTGTGGCCTCTGTGTCTTCCCAGG.................................................251.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGCCTACA............................................................................................................................311.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGCACT...............................................................................................................................271.000.00-1.00-----------------------------------------------------
.............................................................................................................ACCACACCTGGCCGGGAGGAGACAGGGTTC...............................................................................................................301.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCTCA.............................................................................................................................291.000.001.00------------------------------------------------------
.........................TTGGGCAGGCTGGTCCGG...............................................................................................................................................................................................................181.000.00---------1.00---------------------------------------------
......................................................................................................................................................................................................................AGGACACCAAGGTACCCAATG...............2131.001.00---------------0.67--0.33------------------------------------
..............................................................................................TTACAGGCACGAGCCACCACACCCGAC.................................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCGGAC.................................................................................................................................251.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCCAGC............................................................................................................................301.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGGCC...............................................................................................................................251.000.001.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCACCACACCCGGT.................................................................................................................................331.000.001.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCGT...........................................................................................................................................251.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCGACAC...........................................................................................................................3121.003.501.00------------------------------------------------------
..............................................................TCCATCCACCTCAGCCTCCGAG......................................................................................................................................................................221.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCATG.............................................................................................................................291.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGTCC...............................................................................................................................271.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCTGCC.............................................................................................................................271.000.001.00------------------------------------------------------
......................................TCTTGAACTTCTGACCTCAGGGGGG...........................................................................................................................................................................................251.000.00----------------------------1.00--------------------------
........................................................................................TTGGGATTACAGGCACGAGCCACCGCTC......................................................................................................................................281.000.00-1.00-----------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAAT..............................................................................................................................................201.000.00---1.00---------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCAGC..........................................................................................................................................241.000.00-1.00-----------------------------------------------------
.......................................CTTGAACTTCTGACCTCGTG...............................................................................................................................................................................................201.000.00-------------------------------1.00-----------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGAG................................................................................................................................261.000.001.00------------------------------------------------------
.................................................................ATCCACCTCAGCCTCCCAAAGTGTTTGG.............................................................................................................................................................281.000.00-----------------------1.00-------------------------------
.....................CATGTTGGGCAGGCTGGTC..................................................................................................................................................................................................................1901.001.00-------------------------1.00-----------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCTGGC............................................................................................................................281.000.00-1.00-----------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCACGAGCCAGT..........................................................................................................................................281.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCAG...............................................................................................................................271.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGCTGCC.............................................................................................................................301.000.001.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCGC...........................................................................................................................................251.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGGCTG..............................................................................................................................281.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGCCCG..............................................................................................................................291.000.001.00------------------------------------------------------
.........................................................................................................................................................................CTCCTCATCTGTGGCCTCTGTGTCTCTG.....................................................281.000.00--------1.00----------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCGGCT.................................................................................................................................251.000.00-1.00-----------------------------------------------------
.....................CATGTTGGGCAGGCTGGTCAA................................................................................................................................................................................................................2101.001.00---------------1.00---------------------------------------
......................................................................................................................................................................................................................AGGACACCAAGGTACCCAATGCCGTC..........261.000.001.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCTAC..........................................................................................................................................241.000.00-1.00-----------------------------------------------------
.................................................................................................CAGGCACGAGCCACCACACCTGGCTAG..............................................................................................................................271.000.00---1.00---------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCTCG.............................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCTGAC............................................................................................................................301.000.001.00------------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCGCG..........................................................................................................................................241.000.001.00------------------------------------------------------
........................................TTGAACTTCTGACCTCAGAG..............................................................................................................................................................................................201.000.00----------------------1.00--------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCTGC.............................................................................................................................291.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGCCCG...............................................................................................................................251.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGCCAC..............................................................................................................................291.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCTGGG.............................................................................................................................291.000.00-1.00-----------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGACTG..............................................................................................................................281.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGCCCC...............................................................................................................................271.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTCTCC................................................................................................................................271.000.001.00------------------------------------------------------
....................................................................................AGTGTTGGGATTACAGGCACTCCT..............................................................................................................................................241.000.00-------1.00-----------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGTGGG..............................................................................................................................281.000.001.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCTCAG.........................................................................................................................................271.000.00---1.00---------------------------------------------------
.................................................................................................................................................................................................................TAACAAGGACACCAAGGTACCCAATGCCTGT..........3131.001.00----1.00--------------------------------------------------
...............................................................................................................................................TCAGGGTGGGAGGAGGGGGGAG.....................................................................................221.000.00-------1.00-----------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCACCC.............................................................................................................................291.000.001.00------------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCTAG.............................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTCGCG................................................................................................................................261.000.001.00------------------------------------------------------
..............................................................................................TTACAGGCACGAGCCACCACACCTCTCC................................................................................................................................281.000.001.00------------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCACACCTGGTCC...............................................................................................................................281.000.001.00------------------------------------------------------
.................................................................................................CAGGCACGAGCCACCACACCTGGCTGGG.............................................................................................................................281.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGTCCG...............................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCTGCC.............................................................................................................................291.000.00-1.00-----------------------------------------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCCGG.............................................................................................................................271.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGCCAGA.............................................................................................................................291.000.00-1.00-----------------------------------------------------
...............................................................................................TACAGGCACGAGCCACCCCTC......................................................................................................................................211.000.00-1.00-----------------------------------------------------
........................................................................................TTGGGATTACAGGCACGAGCCAG...........................................................................................................................................231.000.00-1.00-----------------------------------------------------
..............................................................................................TTACAGGCACGAGCCACCACACTG....................................................................................................................................241.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGGAA................................................................................................................................261.000.001.00------------------------------------------------------
................................................................................................ACAGGCACGAGCCACCACACCTGCCCT...............................................................................................................................271.000.001.00------------------------------------------------------
......................................................................................TGTTGGGATTACAGGCACGAGCCGCGG.........................................................................................................................................271.000.00-1.00-----------------------------------------------------
.......................................................................................................................................................................................................GGATCACCATTAACAAGGAC...............................2040.750.75-----------0.75-------------------------------------------
..........................................................................................................................................................................................................................CACCAAGGTACCCAATGCCTG...........2130.670.67--------------0.67----------------------------------------
................................................................................................................................................................................................................TTAACAAGGACACCAAGGTACCCAATGCCTG...........3130.670.67-------------0.67-----------------------------------------
.................................................................................................................................................................................................................TAACAAGGACACCAAGGTACCCAATGC..............2730.670.67----0.67--------------------------------------------------
...............................................................................................................................................................................................................ATTAACAAGGACACCAAGG........................1940.500.50--------------------------------0.50----------------------
..................................................................................................AGGCACGAGCCACCACACCTGGCCG...............................................................................................................................2520.500.500.50------------------------------------------------------
.................................................................................................................................................................................................................TAACAAGGACACCAAGGTA......................1940.500.50------------------0.50------------------------------------
.........................................................................................................................................................................................................ATCACCATTAACAAGGACACCAAG.........................2440.500.50------------------------------------0.50------------------
..............................................................................................................................................................................................................CATTAACAAGGACACCAAGGTACC....................2440.500.50-----------------------------------0.50-------------------
................................................................................................................................................CAGGGTGGGAGGAGGGGA........................................................................................1880.380.38--------------------------------------0.12-------------0.120.12-
.....................................................................................................................................................................................................................AAGGACACCAAGGTACCCAATGCC.............2430.330.33--------------------------------------0.33----------------
...................................................................................................................................................................................................................ACAAGGACACCAAGGTACCCAATG...............2430.330.33-----------------0.33-------------------------------------
.................................................................................................................................................................................................................................GTACCCAATGCCTGTTTA.......1830.330.33----------------------------------------0.33--------------
.....................................................................................................................................................................................................................AAGGACACCAAGGTACCCAATG...............2230.330.33------------------0.33------------------------------------
...............................................................................................................................................................................................................ATTAACAAGGACACCAAGGTACCCAATGCC.............3030.330.33-------------------------------------0.33-----------------
..........................................................................................................................................................................................................................CACCAAGGTACCCAATGCCTGT..........2230.330.33---------------------------------------0.33---------------
...............................................................................................................................................................................................................ATTAACAAGGACACCAAGGTACCCAATGC..............2930.330.33-----------------------------------------0.33-------------
.........................................................................................................................................................................................................ATCACCATTAACAAGGACACCA...........................2240.250.25--0.25----------------------------------------------------
............................................................................................................................................................................CTCATCTGTGGCCTCTGTGTCT........................................................2240.250.25------------------------------------------0.25------------
................................................................................................................................................................................................................TTAACAAGGACACCAAGGTACC....................2240.250.25--------------------------------------------0.25----------
.......................................................................................................................GCCGGGAGGAGACAGGGT.................................................................................................................1840.250.25---------------------------------------------0.25---------
...............................................................................................................................................................................................................ATTAACAAGGACACCAAGGTAC.....................2240.250.25-----0.25-------------------------------------------------
...............................................................................................................................................................................................................ATTAACAAGGACACCAAGGTACC....................2340.250.25------------------------------------------------0.25------
......................................................................................................ACGAGCCACCACACCTGGCCG...............................................................................................................................2140.250.250.25------------------------------------------------------
...........................................................................................................................................................................CCTCATCTGTGGCCTCTGTGTC.........................................................2240.250.25-----------0.25-------------------------------------------
......................................................................................................................................................................................................................AGGACACCAAGGTACCCA..................1840.250.25-----------------------------------------------0.25-------
....................................................................................................................................................................................................................CAAGGACACCAAGGTACC....................1850.200.20--------------------------------------------------0.20----
...................................................................................................................................................................................................................ACAAGGACACCAAGGTA......................1750.200.20---------------------------------------------------0.20---
........................................................................................TTGGGATTACAGGCACGAGCCACCACACCTGGC.................................................................................................................................3350.200.200.20------------------------------------------------------
......................................................................................................................................................GGGAGGAGGGGAGCCCCTG.................................................................................1950.200.20-------------------------------------------------0.20-----
...................................................................................................................................................................................................................ACAAGGACACCAAGGTAC.....................1850.200.20-----0.20-------------------------------------------------
.................................................................................................................................................................................................................TAACAAGGACACCAAG.........................1660.170.17----0.17--------------------------------------------------
..................................................................................................................................................................................................................AACAAGGACACCAAGG........................1660.170.17--------------------------------0.17----------------------
........................................................................................TTGGGATTACAGGCACGAGCCACCACACCTGG..................................................................................................................................3260.170.170.17------------------------------------------------------
......................................................................................................................................................................................................................AGGACACCAAGGTACC....................1670.140.14-------------------------------------0.14-----------------

Antisense strand
TTAGTACAGGCAGGGTTTTGCCATGTTGGGCAGGCTGGTCTTGAACTTCTGACCTCAGGTCATCCATCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCACGAGCCACCACACCTGGCCGGGAGGAGACAGGGTTTAGACTCAGGGTGGGAGGAGGGGAGCCCCTGCTCCTCATCTGTGGCCTCTGTGTCTTCCTAGGATCACCATTAACAAGGACACCAAGGTACCCAATGCCTGTTTATTCACCA
.........................................................................................(((((....(((((((((((((....((((.((....))...))))...........(((((((((.((((....)))).)))).)))))))))).)).)))))))))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM956925PAZD5SRR189785SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR343335SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)
........................GTTGGGCAGGCTGGTCTTGAACTGG......................................................................................................................................................................................................... 252.000.002.00------------------------------------------------------
........................GTTGGGCAGGCTGGTCTGGTG............................................................................................................................................................................................................. 212.000.001.001.00-----------------------------------------------------
...........................................................................................GGATTACAGGCACGAGCTCTG.......................................................................................................................................... 212.000.00------------------------1.00-----1.00------------------------
............................GGCAGGCTGGTCTTGAAATTT......................................................................................................................................................................................................... 212.000.00--2.00----------------------------------------------------
...........................................................TCATCCATCCACCTCAGAAA........................................................................................................................................................................... 201.000.00-------------1.00-----------------------------------------
.......................................................................................................CGAGCCACCACACCTGGGGG............................................................................................................................... 201.000.00----------1.00--------------------------------------------
........................GTTGGGCAGGCTGGTCTGGCG............................................................................................................................................................................................................. 211.000.00-1.00-----------------------------------------------------
...................................................................................................................................................................................GTGGCCTCTGTGTCTTCCA.................................................... 191.000.00-----------------------------1.00-------------------------
........................GTTGGGCAGGCTGGTGGCG............................................................................................................................................................................................................... 191.000.00--------------------------1.00----------------------------
................................................................TTTGGGAGGCTGAGGTGGATG..................................................................................................................................................................... 2101.001.00-----1.00-------------------------------------------------
..............................................................TCCATCCACCTCAGCCTCCCAAAGTGTCCAC............................................................................................................................................................. 311.000.00-1.00-----------------------------------------------------
............................................................CATCCATCCACCTCATGTG........................................................................................................................................................................... 191.000.00------------1.00------------------------------------------
..................................................................................................................................................................................................................................TACCCAATGCCTGTTTATTCAAAA 241.000.00----1.00--------------------------------------------------
..........................................................................................................GCCACCACACCTGGCCGGT............................................................................................................................. 191.000.00---------------------1.00---------------------------------
........................GTTGGGCAGGCTGGTCTGGC.............................................................................................................................................................................................................. 201.000.001.00------------------------------------------------------
.......................TGTTGGGCAGGCTGGTCTGGCG............................................................................................................................................................................................................. 221.000.00-1.00-----------------------------------------------------
...............................................................CCATCCACCTCAGCCTCCCACC..................................................................................................................................................................... 221.000.00-1.00-----------------------------------------------------
......................ATGTTGGGCAGGCTGGTCTTA............................................................................................................................................................................................................... 211.000.00--1.00----------------------------------------------------
.................................................................ATCCACCTCAGCCTCCCAAAAGT.................................................................................................................................................................. 231.000.00----------1.00--------------------------------------------
..............................................................TCCATCCACCTCAGCCTCCCAAA..................................................................................................................................................................... 231.000.00--------------------1.00----------------------------------
.....................................................................ACCTCAGCCTCCCAAAGTGTTGGTGCG.......................................................................................................................................................... 271.000.00--------1.00----------------------------------------------
............................................................CATCCATCCACCTCATATA........................................................................................................................................................................... 191.000.00--1.00----------------------------------------------------
............................................................CATCCATCCACCTCAGCAA........................................................................................................................................................................... 191.000.00--1.00----------------------------------------------------
............................................................CATCCATCCACCTCAGCAG........................................................................................................................................................................... 191.000.00--1.00----------------------------------------------------
......................................................................................................................................................................CTGCTCCTCATCTGTGCTA................................................................. 191.000.00------------1.00------------------------------------------
..................................................................................................................................................................................................................................TGAATAAACAGGCATTGGGTA... 2130.670.67----------------------------------0.67--------------------
..............................................................................................................................................................................................TTGTTAATGGTGATCCTAGGAAGAC................................... 2540.250.25----0.25--------------------------------------------------
...................................................................................................................................................................................................CCTTGGTGTCCTTGTTAATGGTGATCCTAGG........................ 3140.250.25----0.25--------------------------------------------------
..............................................................................................................TGTCTCCTCCCGGCCAGGTGTGG..................................................................................................................... 2340.250.25-------------------------------------------0.25-----------
...........................................................GAGGCTGAGGTGGATGGATGA.......................................................................................................................................................................... 2190.110.11------------------------------------------------------0.11