ID: uc003uux.1_intron_0_0_chr7_100033157_r
GENE: (2)
chr7:100033107-100033303-


(1)
AGO2.ip 		(1)
B-CELL 		(3)
BREAST 		(8)
CELL-LINE 		(3)
HEART 		(3)
HELA 		(1)
LIVER 		(7)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
XRN.ip

Sense strand
GGGAGAAATTGGCTCTCCTGCCGCCACAGGCTCGAGCCCCGCACCCAAAGGTGATGGGGTCTGGGCGTGGGGCTTCCTCCATGTACCCCCTTACCCGGATCCTTCCTCCCAAAGTGTAACCTTGCTTTGGGCCCAACCTCCCAACAGGAGCCACCTGGGCCTGGGCCAGACATGACCATCTTGTGTGACCCAGAAAC
..................................................((((.(((((....((((((((....))))))))))))).))))..(((....))).....(((((......)))))......................................................................
..................................................51..........................................................................127....................................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343334SRR343335SRR343337DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.........................................................................................................CTCCCAAAGTGTAACGGA..........................................................................1823.000.005.007.007.00------1.00-------------1.00--1.001.00---------
.........................................................................................................CTCCCAAAGTGTAACGG...........................................................................1723.000.006.004.005.005.00------------1.001.00-----------1.00-------
........................................................................................................CCTCCCAAAGTGTAACGG...........................................................................1836.330.332.671.330.332.00---------------------------------
.......................................................................................................TCCTCCCAAAGTGTAACGG...........................................................................196.000.005.00-----------------1.00------------------
........................................................................................................CCTCCCAAAGTGTAACGGA..........................................................................1933.670.33-1.331.001.00-----------------------------0.33---
......AATTGGCTCTCCTGCACAG............................................................................................................................................................................193.000.001.002.00-----------------------------------
........................CACAGGCTCGAGCCCCGCACCCAAAG...................................................................................................................................................2613.003.00------3.00------------------------------
.............................................................................................................................................CAACAGGAGCCACCTGGGCCTGGG................................2412.002.00-----------2.00-------------------------
.......................................................................................................TCCTCCCAAAGTGTAACGGA..........................................................................202.000.001.00--1.00---------------------------------
........................................................................................................................CTTGCTTTGGGCCCAACCTCCCAACA...................................................2612.002.00--------2.00----------------------------
.......................................................................................................TCCTCCCAAAGTGTAACGGAG.........................................................................212.000.002.00------------------------------------
....................................................GATGGGGTCTGGGCGTGG...............................................................................................................................1811.001.00-------------1.00-----------------------
.............................................................................................................................TTTGGGCCCAACCTCCCAACAGG.................................................2311.001.00----------------------------1.00--------
.........................................................................................................CTCCCAAAGTGTAACGGAG.........................................................................191.000.00---------1.00---------------------------
........................................................................................................................................................ACCTGGGCCTGGGCCGGCG..........................191.000.00--------------1.00----------------------
....................................................................................ACCCCCTTACCCGGATCCTTCCTCCCAAAGCG.................................................................................321.000.00------------------------1.00------------
...................................................................................................................................CCCAACCTCCCAACAGCCGT..............................................201.000.00---------------1.00---------------------
...........................................................................................................................................................TGGGCCTGGGCCAGACATGAC.....................2111.001.00-------------------------1.00-----------
................................................................................................................................................................................CATCTTGTGTGACCCAG....1720.500.50----0.50--------------------------------
........................................................................................................CCTCCCAAAGTGTAAC.............................................................................1630.330.33-0.33-----------------------------------
........................................................................................................CCTCCCAAAGTGTAACG............................................................................1730.330.33-------------------------------0.33-----
...........................................................TCTGGGCGTGGGGCT...........................................................................................................................1570.140.14------------------------------------0.14

Antisense strand
GGGAGAAATTGGCTCTCCTGCCGCCACAGGCTCGAGCCCCGCACCCAAAGGTGATGGGGTCTGGGCGTGGGGCTTCCTCCATGTACCCCCTTACCCGGATCCTTCCTCCCAAAGTGTAACCTTGCTTTGGGCCCAACCTCCCAACAGGAGCCACCTGGGCCTGGGCCAGACATGACCATCTTGTGTGACCCAGAAAC
..................................................((((.(((((....((((((((....))))))))))))).))))..(((....))).....(((((......)))))......................................................................
..................................................51..........................................................................127....................................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343334SRR343335SRR343337DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..................CACCTTTGGGTGCGGGGCTCGAGCCTGTGGCGGCA................................................................................................................................................ 3513.003.00-----3.00-------------------------------
.......................CCTTTGGGTGCGGGGCTCGAGCCTGTGG.................................................................................................................................................. 2812.002.00------------2.00------------------------
..................................................................................................................................CCTGTTGGGAGGTTGGGC................................................. 1812.002.00----------2.00--------------------------
....................................................GATGGGGTCTGGGCGT................................................................................................................................. 162.000.00-------2.00-----------------------------
.....................................................................................................................................................................GTCACACAAGATGGTCATGTCTGG........ 2411.001.00----1.00--------------------------------
..........................................................................................................................................................CTGGGCCTGGGCCAGAACTT....................... 201.000.00----------------------1.00--------------
.....................................................................................................................................................................CACAAGATGGTCATGTCTGG............ 2011.001.00---------------------1.00---------------
.....................................................................................................................................................................AAGATGGTCATGTCTGG............... 1711.001.00------------------------------1.00------
...........TCGAGCCTGTGGCGGCAGGAGAGC.................................................................................................................................................................. 2411.001.00----1.00--------------------------------
.............................................................................................TTTGGGAGGAAGGATCCGGG.................................................................................... 2011.001.00--------------------1.00----------------
........................................................................................................................................CCTCCCAACAGGAGCCAC........................................... 181.000.00----1.00--------------------------------
........................................................................................................................................................ACCTGGGCCTGGGCCATTTG......................... 201.000.00-------------------1.00-----------------
..............................................................................................................................................................CATGTCTGGCCCAGGC....................... 1641.001.00----0.250.75-------------------------------
................................................................................................................GAGGTTGGGCCCAAAGCAAGGTTACACT......................................................... 2811.001.00----1.00--------------------------------
.................................................................................................................................CTGTTGGGAGGTTGGGCC.................................................. 1840.500.50----------------------------------0.250.25-
..............................................................................................................................................................TCATGTCTGGCCCAGGC...................... 1720.500.50-----0.50-------------------------------
..........GTGGCGGCAGGAGAGCC.......................................................................................................................................................................... 1730.330.33--------------------------------0.33----