ID: uc003uih.2_intron_8_0_chr7_86810658_f.3p
GENE: (9)
chr7:86811344-86811593+


(3)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
XRN.ip

Sense strand
TTGCTGCCTGTTTTTTTTTCACCCACAGACAACTGTGGACCCCAAAAAAAGGCCACACTTTCAAACTTTGGCTCTCAAAGTATTGCTGCCCACAACTTCCAAACCAGTCAAATGGGAAGAAGAAGAATGAAGAATAAATGATGAAATTAAAAGGGAGAAAACAATTGAACCAAATGCTGATTGGCAGACTCTTGTTTTAGGCTCCGGATAAAGCATGGCAATGACTGGGCAACAATAGGGGCGGCGCTAG
.............................................................................................................................................((((((...(((((.........(((...))).((((....))))..)))))))))))...................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		GSM532886(GSM532886)
G850T. (cervix)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
.............................................................................................................................................................................ATGCTGATTGGCAGACTCTTG........................................................21113.0013.00--12.00--------------------------------------1.00------
..............................................................................................................................................................AAACAATTGAACCAATCG..........................................................................1811.000.0011.00-----------------------------------------------
..............................................................................................................................................................AAACAATTGAACCAATCGA.........................................................................199.000.008.00--------------------1.00--------------------------
........................................................................................................................................AATGATGAAATTAAAAGGGAGAA...........................................................................................2314.004.00-4.00----------------------------------------------
...............................................................................................................................................................................................................................ACTGGGCAACAATAGGGGCGGC.....2213.003.00------1.00---------1.00------------------1.00------------
...............................................................................................................................................................................................................................ACTGGGCAACAATAGGGGCGGCGCTAT273.000.00-3.00----------------------------------------------
.................................................................................................................................................................................................................AAAGCATGGCAATGACTGGGCAACA................2513.003.00---3.00--------------------------------------------
..............................................................................................................AATGGGAAGAAGAAGAATGAAGAATA..................................................................................................................2613.003.00-3.00----------------------------------------------
.....................................................................................................................AGAAGAAGAATGAAGAATAAATGATGAA.........................................................................................................2812.002.00-----2.00------------------------------------------
................................................................................................................................................................................................................................CTGGGCAACAATAGGGGCG.......1912.002.00----------2.00-------------------------------------
.....................................................................................................................................................AAAGGGAGAAAACAATTGAACC...............................................................................2212.002.00-2.00----------------------------------------------
................................................................................................................................................................................................................................CTGGGCAACAATAGGGGCGGC.....2112.002.00------------2.00-----------------------------------
............................................................................................................................................................................................................CGGATAAAGCATGGCAAT............................1812.002.00--------2.00---------------------------------------
.................................................................................................................................................................................TGATTGGCAGACTCTTGTTTA....................................................211.000.00-1.00----------------------------------------------
...........................................................................................ACAACTTCCAAACCAGTCAAATG........................................................................................................................................2311.001.00------------------------1.00-----------------------
..............................................................................................................................................................................TGCTGATTGGCAGACTCTTGTT......................................................2211.001.00--------------------------------------1.00---------
.................................................................................................................................................................................TGATTGGCAGACTCTTGTT......................................................1911.001.00-----------1.00------------------------------------
..............................................................................................................AATGGGAAGAAGAAGAATGA........................................................................................................................2011.001.00-------------------------------------1.00----------
..............................................................................................................AATGGGAAGAAGAAGAATGAAGT.....................................................................................................................2311.001.00--------------------------------1.00---------------
..............................................................................................................AATGGGAAGAAGAAGAATGAAGAATAAATGATGA..........................................................................................................3411.001.00----1.00-------------------------------------------
.........................................................................................................................................................GGAGAAAACAATTGAATAG..............................................................................191.000.00---------------------------1.00--------------------
..........................................................................................................................................................................................................................CAATGACTGGGCAACAAT..............1811.001.00------------------------------------1.00-----------
..................................................................................................................................................................................................................................GGGCAACAATAGGGGCGGC.....1911.001.00-------------1.00----------------------------------
.......................................................................................................................................................................AACCAAATGCTGATTGGCAGACTC...........................................................2411.001.00--------------------------1.00---------------------
...............................................................................................................................................................................GCTGATTGGCAGACTCTTGTT......................................................2111.001.00-------1.00----------------------------------------
.......................................................................................................................................................................................................GGCTCCGGATAAAGCATGGCAATG...........................2411.001.00-1.00----------------------------------------------
..........................................................................................................................................................................................................TCCGGATAAAGCATGGCAATGACT........................2411.001.00-------1.00----------------------------------------
................................................................................................................................................AATTAAAAGGGAGAAAACAATTG...................................................................................2311.001.00----1.00-------------------------------------------
...............................................................................................................................................................................................................................ACTGGGCAACAATAGGGGCGGTTT...241.000.00-1.00----------------------------------------------
...................................................................................................................................................................................ATTGGCAGACTCTTGTTTTAGGCTCCCG...........................................281.000.00---------------1.00--------------------------------
.....................................................................................................................................................................TGAACCAAATGCTGATTGGCAGACTCT..........................................................2711.001.00----1.00-------------------------------------------
.........................................................................................................................GAAGAATGAAGAATAAATGATGAAATTAAAAGG................................................................................................3311.001.00-------------1.00----------------------------------
.......CTGTTTTTTTTTCACCCACAGAC............................................................................................................................................................................................................................2311.001.00-----------1.00------------------------------------
.....................................................................................................................................................AAAGGGAGAAAACAATTGAACCA..............................................................................2311.001.00----------------------------------1.00-------------
...........................................................................................................................................................................................................CCGGATAAAGCATGGCAATGACTGGG.....................2611.001.00---------------------------------------1.00--------
................................................................................................................TGGGAAGAAGAAGAATGAAGAATAAAT...............................................................................................................2711.001.00-1.00----------------------------------------------
...............................ACTGTGGACCCCAAAAAAAGGCC....................................................................................................................................................................................................2311.001.00------------------------------------------1.00-----
..........................................................................................................................................................................................................................CAATGACTGGGCAACAATAGGGGC........2411.001.00---------1.00--------------------------------------
.................................................................................................................................................ATTAAAAGGGAGAAAACAATTGT..................................................................................231.000.00------1.00-----------------------------------------
....................................GGACCCCAAAAAAAGGCC....................................................................................................................................................................................................1811.001.00-------------------1.00----------------------------
...........................................................................................................................................................................AAATGCTGATTGGCAGACTCTTGTTTTAGGC................................................3111.001.00--------------------1.00---------------------------
............................................................................................................................................................................................................CGGATAAAGCATGGC...............................1511.001.00-------------------------1.00----------------------
........................................................ACTTTCAAACTTTGGCTCTCAAAGTACTGC....................................................................................................................................................................301.000.00--------------1.00---------------------------------
.......................................................................................................CCAGTCAAATGGGAAGAAGAAGAATGAAGAA....................................................................................................................3111.001.00-----------------------------1.00------------------
............................................................................................................................................................................................................CGGATAAAGCATGGCAATGAAA........................221.000.00--------------------------------------------1.00---
........................................................................................................................................AATGATGAAATTAAAAGGGAGAAA..........................................................................................2411.001.00------------------1.00-----------------------------
....................................................................................................................................AATAAATGATGAAATTAAAAGGG...............................................................................................2311.001.00-1.00----------------------------------------------
....................................................................................................................AAGAAGAAGAATGAAGAATAAAT...............................................................................................................2311.001.00-------------------------------------------1.00----
..............................................................................................................................................................AAACAATTGAACCAACTCG.........................................................................191.000.001.00-----------------------------------------------
.................................................................................................................................................................................TGATTGGCAGACTCTTGTTTTAGGC................................................2511.001.00-----------------------1.00------------------------
.............................................................................................................................................................................................................GGATAAAGCATGGCAATGACTGGGCAAC.................2811.001.00-------------------------------1.00----------------
.....................................................................................................................................................AAAGGGAGAAAACAATTGAAC................................................................................2111.001.00----------------------1.00-------------------------
...........................................................................................................................................................................................................CCGGATAAAGCATGGCAATGACT........................2311.001.00----------------------------------------1.00-------
................................................................................................................................................................................................................................CTGGGCAACAATAGGGGCGGCGCT..2411.001.00---------------------------------1.00--------------
........................................................................................................................AGAAGAATGAAGAATAAATGA.............................................................................................................2111.001.00---------1.00--------------------------------------
..............................................................................................................AATGGGAAGAAGAAGAATGAA.......................................................................................................................2111.001.00------------------------------1.00-----------------
..............................................................................................................AATGGGAAGAAGAAGAATGAAG......................................................................................................................2211.001.00-----1.00------------------------------------------
........................................................................................................................AGAAGAATGAAGAATAAA................................................................................................................1860.170.17-----------------------------------------------0.17
.........GTTTTTTTTTCACCCA.................................................................................................................................................................................................................................1680.120.12---------------0.12--------------------------------

Antisense strand
TTGCTGCCTGTTTTTTTTTCACCCACAGACAACTGTGGACCCCAAAAAAAGGCCACACTTTCAAACTTTGGCTCTCAAAGTATTGCTGCCCACAACTTCCAAACCAGTCAAATGGGAAGAAGAAGAATGAAGAATAAATGATGAAATTAAAAGGGAGAAAACAATTGAACCAAATGCTGATTGGCAGACTCTTGTTTTAGGCTCCGGATAAAGCATGGCAATGACTGGGCAACAATAGGGGCGGCGCTAG
.............................................................................................................................................((((((...(((((.........(((...))).((((....))))..)))))))))))...................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		GSM532886(GSM532886)
G850T. (cervix)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
............................................................................................................................GAATGAAGAATAAATAATC........................................................................................................... 191.000.00--------------1.00---------------------------------
........................................................................................................................AGAAGAATGAAGAATAAAAC.............................................................................................................. 201.000.00----------------------------1.00-------------------
..............................................................................................................................................................AAACAATTGAACCAAACC.......................................................................... 181.000.001.00-----------------------------------------------
........................................................................................................................................CTCCCTTTTAATTTCATCATT............................................................................................. 2111.001.00-----------------1.00------------------------------
...........CTGTGGGTGAAAAAAAA.............................................................................................................................................................................................................................. 1720.500.50---------------------------------------------0.50--
..........TGTGGGTGAAAAAAAAA............................................................................................................................................................................................................................... 1750.200.20----------------------------------------------0.20-