ID: uc003uhx.2_intron_3_0_chr7_82430908_r.3p
GENE: PCLO(21)
chr7:82430858-82431107-


(1)
AGO1.ip
(2)
AGO2.ip
(1)
AGO3.ip
(1)
B-CELL
(4)
BREAST
(23)
CELL-LINE
(1)
CERVIX
(2)
HELA
(1)
LIVER
(6)
OTHER
(3)
SKIN

Sense strand
TAAAATTATGATATAGAGCAATTAACTGTGTATGTATGTGCCATTCAAATAATTATTGCAAGTCCAAAAATATTCGGTTGTGCAAAAGTAATTGCAGGTTTTGCCATTACTATCAATGTCATTTTATTTATGCAAATTTAGCCTCTTTTGCATTCATGAGATCATAACTGAATATATCATTTTATTTTATTTCTAAACAGAGGGAAGATGGGACAGAATGGACAAGAGCCTGTAAAACAGCCAGGGGTAG
..............................................................................(((.....((((((.((((...)))).)))))).(((.(((.(((((((..(((((((..........)))))))..))))))).)))..))).........................)))...................................................
..............................................................................79.......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM416733(GSM416733)
HEK293. (cell line)
GSM956925PAZD5SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
...................................................................................AAAAGTAATTGCAGGTTTTGA..................................................................................................................................................2111.000.0011.00----------------------------------------
...................................................................................AAAAGTAATTGCAGGTTTTGAC.................................................................................................................................................2211.000.006.00-1.00---1.00--------2.00--------1.00----------------
.............................................................................................................................................................................ATATCATTTTATTTTATTTTATG......................................................238.000.00---3.00---3.00--------1.00-------------------1.00----
..................................................................................CAAAAGTAATTGCAGGTTTTGA..................................................................................................................................................226.000.003.00-----1.00-1.00------------------------1.00-------
.................................................................................................................................................................TCATAACTGAATATAAAAG......................................................................192.000.00-2.00---------------------------------------
..........................................................................................................................................................................AATATATCATTTTATCCAG.............................................................191.000.00--------------1.00--------------------------
...................................................................................AAAAGTAATTGCAGGTTGCC...................................................................................................................................................201.000.00------1.00----------------------------------
...................................................................................AAAAGTAATTGCAGGTTTTTC..................................................................................................................................................211.000.00------------------------------1.00----------
...................................................................................AAAAGTAATTGCAGGTTTGAC..................................................................................................................................................211.000.001.00----------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGACAT...............................................................................................................................................221.000.00---------------------------1.00-------------
..................................................................................CAAAAGTAATTGCAGAGTT.....................................................................................................................................................191.000.00---------1.00-------------------------------
................................................................................................................................................................................TCATTTTATTTTATTTCTCTA.....................................................211.000.00----------1.00------------------------------
................................................................................................................................................................................TCATTTTATTTTATTTCTTG......................................................201.000.00---1.00-------------------------------------
.................................................................AAAAATATTCGGTTGGGA.......................................................................................................................................................................181.000.00--------------------------------1.00--------
........................................................................TTCGGTTGTGCAAAAGTAATTGCAGG........................................................................................................................................................2611.001.00-------------------1.00---------------------
................................................................................................................................................................................TCATTTTATTTTATTTCTTTG.....................................................211.000.00-------1.00---------------------------------
............................................................................................................................................................................TATATCATTTTATTTTATGTTA........................................................221.000.00----------1.00------------------------------
...................................................................................AAAAGTAATTGCAGGTTTTGCC.................................................................................................................................................2201.001.00-----1.00-----------------------------------
...................................................................................................................................................................................TTTTATTTTATTTCTAACTTC..................................................211.000.00---1.00-------------------------------------
................................................................................................................................................................................TCATTTTATTTTATTTCTGCTC....................................................221.000.00-------------------------------1.00---------
...................................................................................AAAAGTAATTGCAGGTTGTG...................................................................................................................................................201.000.001.00----------------------------------------
....................................................................................AAAGTAATTGCAGGTTTTGAC.................................................................................................................................................211.000.00-----------------------------1.00-----------
..............................................................................................................................................................................................................................CAAGAGCCTGTAAAAAAA..........181.000.00---------1.00-------------------------------
.............................................................................................................................................................................ATATCATTTTATTTTATTTTTTG......................................................231.000.00---1.00-------------------------------------
.........................................................................................AATTGCAGGTTTTGCCATTATT...........................................................................................................................................221.000.00---------1.00-------------------------------
.................................................................................................................................................................................CATTTTATTTTATTTCTAAATAG..................................................231.000.00---1.00-------------------------------------
...................................................................................AAAAGTAATTGCAGGTTGTGA..................................................................................................................................................211.000.001.00----------------------------------------
...................................................................................AAAAGTAATTGCAGGTTTGG...................................................................................................................................................201.000.001.00----------------------------------------
............................................................................................................................................................................TATATCATTTTATTTTATTTTATG......................................................2480.500.12---0.38------------0.12------------------------
..............................................................................................................................................................................TATCATTTTATTTTATTTC.........................................................1950.400.40---------------------------------------0.200.20
............................................................................................................................................................................TATATCATTTTATTTTATTT..........................................................2080.120.12---0.12-------------------------------------

Antisense strand
TAAAATTATGATATAGAGCAATTAACTGTGTATGTATGTGCCATTCAAATAATTATTGCAAGTCCAAAAATATTCGGTTGTGCAAAAGTAATTGCAGGTTTTGCCATTACTATCAATGTCATTTTATTTATGCAAATTTAGCCTCTTTTGCATTCATGAGATCATAACTGAATATATCATTTTATTTTATTTCTAAACAGAGGGAAGATGGGACAGAATGGACAAGAGCCTGTAAAACAGCCAGGGGTAG
..............................................................................(((.....((((((.((((...)))).)))))).(((.(((.(((((((..(((((((..........)))))))..))))))).)))..))).........................)))...................................................
..............................................................................79.......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM416733(GSM416733)
HEK293. (cell line)
GSM956925PAZD5SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.................................................................................CAAAACCTGCAATTACTTTTGC................................................................................................................................................... 22023.0023.00--7.00-6.005.00-----1.00---------1.00-1.00----------1.00--1.00---
....................................................................................AAAGTAATTGCAGGTTTTGGC................................................................................................................................................. 2111.000.007.00-----2.00---------------1.00-----1.00------------
....................................................................................AAAGTAATTGCAGGTTTTGG.................................................................................................................................................. 209.000.009.00----------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGCTGC............................................................................................................................................... 224.000.00------1.00-2.001.00-------------------------------
....................................................................................AAAGTAATTGCAGGTTTTGGG................................................................................................................................................. 212.000.001.001.00---------------------------------------
.......................................................................................GTAATTGCAGGTTTTGCTCG............................................................................................................................................... 202.000.00-2.00---------------------------------------
..................................................................................CAAAACCTGCAATTACTTTTG................................................................................................................................................... 2102.002.00-------------2.00---------------------------
..................................................................................CAAAAGTAATTGCAGGTTTTGA.................................................................................................................................................. 222.000.00-----------------1.00-------1.00---------------
...................................................................................AAAAGTAATTGCAGGTTTTGTT................................................................................................................................................. 222.000.002.00----------------------------------------
................................................................................TGCAATTACTTTTGCA.......................................................................................................................................................... 1602.002.00-----------1.00------1.00----------------------
..................................................................................CAAAAGTAATTGCAGGTTTTGTC................................................................................................................................................. 231.000.00--------------------------------------1.00--
.....................................................................................AAGTAATTGCAGGTTTTATG................................................................................................................................................. 201.000.001.00----------------------------------------
..............................................................................TGTGCAAAAGTAATTTTAA......................................................................................................................................................... 191.000.00--------------1.00--------------------------
......................................................................................AGTAATTGCAGGTTTTCGTG................................................................................................................................................ 201.000.00-1.00---------------------------------------
..........................................................................................................................................TAGCCTCTTTTGCATGGCA............................................................................................. 191.000.00--------------------1.00--------------------
..........................................................................................................................................................................................................................TGGACAAGAGCCTGTCCCA............. 191.000.00----------1.00------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGCTT................................................................................................................................................ 211.000.001.00----------------------------------------
....................................................................................AAAGTAATTGCAGGTTTTGCGC................................................................................................................................................ 221.000.00--------1.00--------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGGC................................................................................................................................................. 201.000.00-1.00---------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGGCG................................................................................................................................................ 211.000.00-1.00---------------------------------------
....................................................................................AAAGTAATTGCAGGTTTTGCGA................................................................................................................................................ 221.000.00------------1.00----------------------------
....................................................................................AAAGTAATTGCAGGTTTTGAGC................................................................................................................................................ 221.000.00-1.00---------------------------------------
.......................................................................................GTAATTGCAGGTTTTGATTT............................................................................................................................................... 201.000.001.00----------------------------------------
...................................................................................AAAAGTAATTGCAGGTTTTGAT................................................................................................................................................. 221.000.001.00----------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGATAT............................................................................................................................................... 221.000.001.00----------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGAT................................................................................................................................................. 201.000.001.00----------------------------------------
.......................................................................................GTAATTGCAGGTTTTGCTTG............................................................................................................................................... 201.000.001.00----------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGGTGC............................................................................................................................................... 221.000.00------------1.00----------------------------
............................TGTATGTATGTGCCATGCTA.......................................................................................................................................................................................................... 201.000.00-----------------------------------1.00-----
...............................................................................GTGCAAAAGTAATTGCAGGTTTAG................................................................................................................................................... 241.000.00--------------------------1.00--------------
......................................................................................AGTAATTGCAGGTTTTGGTTG............................................................................................................................................... 211.000.001.00----------------------------------------
....................................................................................AAAGTAATTGCAGGTTTTGCG................................................................................................................................................. 211.000.00-1.00---------------------------------------
.....................................................................................AAGTAATTGCAGGTTTTGGTGG............................................................................................................................................... 221.000.001.00----------------------------------------