ID: uc003tcv.1_intron_5_0_chr7_32591908_f.3p
GENE: AVL9(6)
chr7:32593139-32593388+


(1)
AGO2.ip 		(1)
BRAIN 		(2)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(1)
SKIN

Sense strand
ATCCTTGCAGAAAGTTGTACTGAACAGCACTGTTTCTGAGTATATGTGTACCTAATCAAACATTACAGAAATATTTGGATATTTGCATATTCCTACTTTTTTTTTTTTTTAACCTTTCTTTCTGTTAAGGGGGAAATAACCTTTCTGCAGCAAAAACATTACATTGTAGTCACACTTGAGCTTTTTTGTTAACATTGTAGGTCTGTCACCTCGAGATCTTGTCCTTCATTTTCGACACAAGGTATGGTAC
............................................................................................((((..................(((((..((....))..)))))............((((((((..((.((.(((....)))..))))..))))))))......))))..................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR040032(GSM532917)
G603N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...........................................................................................CCTACTTTTTTTTTTTTTTACAG........................................................................................................................................23321.000.00133.00132.0027.0026.001.002.00--------------------
...........................................................................................CCTACTTTTTTTTTTTACAG...........................................................................................................................................2085.000.0038.0032.009.004.001.001.00--------------------
...........................................................................................CCTACTTTTTTTTTTTTTTAATG........................................................................................................................................2356.000.0012.0013.0016.0015.00----------------------
...........................................................................................CCTACTTTTTTTTTTACAG............................................................................................................................................1938.000.0011.0019.005.003.00----------------------
............................................................................................CTACTTTTTTTTTTTTTTACAG........................................................................................................................................228.000.006.002.00------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTATTG........................................................................................................................................237.000.003.002.001.001.00----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTGG...........................................................................................................................................217.000.006.00-1.00-----------------------
..........................................................................................TCCTACTTTTTTTTTTTTCTTG..........................................................................................................................................226.000.00--1.004.00-1.00--------------------
...........................................................................................CCTACTTTTTTTTTTTTTTATAG........................................................................................................................................236.000.003.002.001.00-----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTAAATG.......................................................................................................................................244.000.002.001.001.00-----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTCG..........................................................................................................................................224.000.00--2.002.00----------------------
.............................................................................................TACTTTTTTTTTTTTTTAACCTTTCTTG.................................................................................................................................284.000.001.001.00-2.00----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTACCG........................................................................................................................................234.000.003.00-1.00-----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTACAA........................................................................................................................................233.000.00-2.001.00-----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTCG...........................................................................................................................................213.000.00-1.001.001.00----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTCTG.........................................................................................................................................233.000.001.00--1.00-1.00--------------------
..........................................................................................TCCTACTTTTTTTTTTTTCG............................................................................................................................................203.000.00---2.001.00---------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTCTTG........................................................................................................................................243.000.00--1.002.00----------------------
...........................................................................................CCTACTTTTTTTTTTTATTG...........................................................................................................................................203.000.002.001.00------------------------
..........................................................................................TCCTACTTTTTTTTTTTTTCTTG.........................................................................................................................................233.000.00--2.001.00----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTCTG.........................................................................................................................................223.000.00-1.00-2.00----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTATTT........................................................................................................................................233.000.00-3.00------------------------
...........................................................................................CCTACTTTTTTTTTTTTCAT...........................................................................................................................................202.000.002.00-------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTCCG.........................................................................................................................................222.000.001.001.00------------------------
.........................................................................................TTCCTACTTTTTTTTTTTTTTTAAG........................................................................................................................................252.000.001.00-1.00-----------------------
..........................................................................................TCCTACTTTTTTTTTTTTCTTT..........................................................................................................................................222.000.00----2.00---------------------
...........................................................................................CCTACTTTTTTTTTTTTTTACGG........................................................................................................................................232.000.002.00-------------------------
...............................................................................................CTTTTTTTTTTTTTTAACCTTTAG...................................................................................................................................242.000.00---2.00----------------------
...........................................................................................CCTACTTTTTTTTTTTTCAAG..........................................................................................................................................212.000.00--1.001.00----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTAAAAG.......................................................................................................................................252.000.00---1.001.00---------------------
....................TGAACAGCACTGTTTCTGAGTAT...............................................................................................................................................................................................................2312.002.00---------2.00----------------
...........................................................................................CCTACTTTTTTTTTTTTCG............................................................................................................................................192.000.001.00-1.00-----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTACG.........................................................................................................................................222.000.001.001.00------------------------
.............................................................................................TACTTTTTTTTTTTTTTAACCCTTT....................................................................................................................................251.000.00-1.00------------------------
................................................................................................TTTTTTTTTTTTTTAACCTTTCTAATT...............................................................................................................................271.000.00----1.00---------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTGTG.........................................................................................................................................231.000.00----1.00---------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTTCTTG.................................................................................................................................271.000.00---1.00----------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTGGC....................................................................................................................................241.000.00-----1.00--------------------
.........................................................................................TTCCTACTTTTTTTTTTTTTTTTCG........................................................................................................................................251.000.00---1.00----------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTCGG....................................................................................................................................241.000.00-------1.00------------------
...........................................................................................CCTACTTTTTTTTTTTTTTCTC.........................................................................................................................................221.000.00-1.00------------------------
........................................................................................ATTCCTACTTTTTTTTTTTTAG............................................................................................................................................221.000.00-1.00------------------------
..................................................................................................................................................................................................TTGTAGGTCTGTCACCTCGAG...................................2111.001.00------------1.00-------------
..........................................................................................TCCTACTTTTTTTTTTTTAG............................................................................................................................................201.000.001.00-------------------------
.......................................................................................TATTCCTACTTTTTTTTTTG...............................................................................................................................................201.000.00---1.00----------------------
...........................................................................................CCTACTTTTTTTTTTTACCG...........................................................................................................................................201.000.00-1.00------------------------
........................................................................................ATTCCTACTTTTTTTTTTTTTTCT..........................................................................................................................................241.000.00--1.00-----------------------
...........................................................................................................................................................................ACACTTGAGCTTTTTTGTTAACATTGTAGGTCTGTCACCTCGAGATCTTGTCCTTCATTTTCGACACAAG.........7011.001.00-----------------------1.00--
........................................................................................ATTCCTACTTTTTTTTTTTTTTTCCC........................................................................................................................................261.000.00-----1.00--------------------
.........................................................................................TTCCTACTTTTTTTTTTAAG.............................................................................................................................................201.000.00---1.00----------------------
............................................................................................CTACTTTTTTTTTTTTTTACTTG.......................................................................................................................................231.000.001.00-------------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTCTAG........................................................................................................................................241.000.00-----1.00--------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTTCTG..................................................................................................................................261.000.00-1.00------------------------
..................................................................................................................................................................................AGCTTTTTTGTTAACATTGTAGA.................................................231.000.00--------------------1.00-----
..............................................................................................................AACCTTTCTTTCTGTACCT.........................................................................................................................191.000.00----1.00---------------------
...............................................................................................CTTTTTTTTTTTTTTAACCTTCAAG..................................................................................................................................251.000.00--1.00-----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTAAAAAG......................................................................................................................................261.000.00----1.00---------------------
..........................................................................................TCCTACTTTTTTTTTTATAT............................................................................................................................................201.000.00-------1.00------------------
..................................................................................................................................................................................................................TCGAGATCTTGTCCTTCATTTTC.................2311.001.00-----------1.00--------------
...........................................................................................CCTACTTTTTTTTTTTTTTAACCG.......................................................................................................................................241.000.00-1.00------------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTCCCG...................................................................................................................................251.000.00--1.00-----------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTCTCG...................................................................................................................................251.000.00---1.00----------------------
........................................................................................ATTCCTACTTTTTTTTTTG...............................................................................................................................................191.000.00---1.00----------------------
...........................................................................................CCTACTTTTTTTTTTTTCAGT..........................................................................................................................................211.000.00--1.00-----------------------
............................................................................................CTACTTTTTTTTTTTTTTACCG........................................................................................................................................221.000.00-----1.00--------------------
..................................................................................................TTTTTTTTTTTTAACCTTTCTAT.................................................................................................................................231.000.00--1.00-----------------------
.............................................................................................TACTTTTTTTTTTTTTTATAAT.......................................................................................................................................221.000.00--1.00-----------------------
............................................................................................CTACTTTTTTTTTTTTTTAAGGG.......................................................................................................................................231.000.00-1.00------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTAACAG.......................................................................................................................................2491.000.110.670.220.11-----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTCTGA........................................................................................................................................241.000.00----1.00---------------------
......................................................................................ATATTCCTACTTTTTTTTTCTT..............................................................................................................................................221.000.00-------1.00------------------
...........................................................................................CCTACTTTTTTTTTTTTTGCAG.........................................................................................................................................221.000.001.00-------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTACTT........................................................................................................................................231.000.001.00-------------------------
........................................................................................ATTCCTACTTTTTTTTTTGTAG............................................................................................................................................221.000.00----------------1.00---------
...........................................................................................CCTACTTTTTTTTTTTTTTCG..........................................................................................................................................211.000.001.00-------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTACTG........................................................................................................................................231.000.001.00-------------------------
............................................................................................CTACTTTTTTTTTTTCCG............................................................................................................................................181.000.001.00-------------------------
...............................................................................................................................................................................TTGAGCTTTTTTGTTAACATTGTAG..................................................2511.001.00--------1.00-----------------
....................................................................................................................................................................................CTTTTTTGTTAACATTGTAG..................................................2011.001.00-------------1.00------------
............................................................................................CTACTTTTTTTTTTTTTTATTCC.......................................................................................................................................231.000.00-1.00------------------------
................................................................................................................................................................................................................................TTCATTTTCGACACAAG.........1711.001.00---------------1.00----------
................................................................................................TTTTTTTTTTTTTTAACCTTTCTTTTTG..............................................................................................................................281.000.00--1.00-----------------------
............................................................................................CTACTTTTTTTTTTTTTTAAAAAG......................................................................................................................................241.000.00-1.00------------------------
.........................................................................................TTCCTACTTTTTTTTTTTTTTTTTC........................................................................................................................................251.000.00-------1.00------------------
..........................................................................................TCCTACTTTTTTTTTTTAGA............................................................................................................................................201.000.00-------1.00------------------
...........................................................................................CCTACTTTTTTTTTTATTG............................................................................................................................................191.000.00--1.00-----------------------
.............................................................................................TACTTTTTTTTTTTTTTATGG........................................................................................................................................211.000.00-1.00------------------------
............................................................................................CTACTTTTTTTTTTTTTTATG.........................................................................................................................................211.000.00-1.00------------------------
........................................................................................ATTCCTACTTTTTTTTTTTTTTTG..........................................................................................................................................241.000.00-1.00------------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTAAAA..................................................................................................................................261.000.00--1.00-----------------------
...........................................................................................CCTACTTTTTTTTTTTTTCTAT.........................................................................................................................................221.000.00-1.00------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTAGAG........................................................................................................................................231.000.001.00-------------------------
...........................................................................................CCTACTTTTTTTTTTTTCCGG..........................................................................................................................................211.000.00---1.00----------------------
...........................................................................................CCTACTTTTTTTTTTTTTCCTG.........................................................................................................................................221.000.00-1.00------------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTCTC.........................................................................................................................................231.000.00----1.00---------------------
..........................................................................................TCCTACTTTTTTTTTTATG.............................................................................................................................................191.000.00---1.00----------------------
................................................................................................................................................................................TGAGCTTTTTTGTTAACATTGTAG..................................................2411.001.00--------1.00-----------------
...........................................................................................CCTACTTTTTTTTTTTCCAG...........................................................................................................................................201.000.00-1.00------------------------
...........................................................................................CCTACTTTTTTTTTTTTTTATAAA.......................................................................................................................................241.000.00---1.00----------------------
............................................................................................CTACTTTTTTTTTTTCATG...........................................................................................................................................191.000.00---1.00----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTGTCG.........................................................................................................................................231.000.001.00-------------------------
........................................................................................ATTCCTACTTTTTTTTTTTTTTTCG.........................................................................................................................................251.000.00---1.00----------------------
.............................................................................................TACTTTTTTTTTTTTTTAACCTTTTC...................................................................................................................................261.000.00--1.00-----------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTTTTT..................................................................................................................................2630.670.33--0.330.33----------------------
........AGAAAGTTGTACTGAACAGCA.............................................................................................................................................................................................................................2120.500.50-------------------------0.50
..........................................................................................TCCTACTTTTTTTTTTTTTTAG..........................................................................................................................................2240.500.50---0.50----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTA...........................................................................................................................................2140.500.500.50-------------------------
..................................TCTGAGTATATGTGTAC.......................................................................................................................................................................................................1720.500.50------------------------0.50-
..............................................................................................ACTTTTTTTTTTTTTTAACCTTTTG...................................................................................................................................2530.330.33-----0.33--------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTTTTTG.................................................................................................................................2730.330.33--0.33-----------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTT.....................................................................................................................................2330.330.330.33-------------------------
..............................................................................................ACTTTTTTTTTTTTTTAACCTTTTTG..................................................................................................................................2630.330.33---0.33----------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTAT..........................................................................................................................................2240.250.500.25-------------------------
..........................................................................................TCCTACTTTTTTTTTTTTTTACAAG.......................................................................................................................................2540.250.50---0.25----------------------
...........................................................................................CCTACTTTTTTTTTTTTTTAAC.........................................................................................................................................2290.110.110.11-------------------------

Antisense strand
ATCCTTGCAGAAAGTTGTACTGAACAGCACTGTTTCTGAGTATATGTGTACCTAATCAAACATTACAGAAATATTTGGATATTTGCATATTCCTACTTTTTTTTTTTTTTAACCTTTCTTTCTGTTAAGGGGGAAATAACCTTTCTGCAGCAAAAACATTACATTGTAGTCACACTTGAGCTTTTTTGTTAACATTGTAGGTCTGTCACCTCGAGATCTTGTCCTTCATTTTCGACACAAGGTATGGTAC
............................................................................................((((..................(((((..((....))..)))))............((((((((..((.((.(((....)))..))))..))))))))......))))..................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR040032(GSM532917)
G603N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.........................................................................................................................................................................................................................CTTGTCCTTCATTTTCCAGA............. 206.000.00------4.00-------1.00--1.00--------
.........................................................................................................................................................................................................................CTTGTCCTTCATTTTCCAG.............. 192.000.00------1.00------------1.00------
..................................................................................................TTTTTTTTTTTTAACCTTTCG................................................................................................................................... 211.000.00----------1.00---------------
.......................................................................................................TTTTTTTAACCTTTCTTTGTA.............................................................................................................................. 211.000.00------------------1.00-------
...............................................................................................................................................................................................................ATGAAGGACAAGATCTCGAGGT..................... 2211.001.00---------------------1.00----
.........................................................................................................................................................................................................................CTTGTCCTTCATTTTCCTG.............. 191.000.00------1.00-------------------
...................................................................................................GAAAGGTTAAAAAAAAAAA.................................................................................................................................... 1901.001.00----------------------1.00---
..............................................................................................AAAGGTTAAAAAAAAAAAAAAGT..................................................................................................................................... 2330.670.67----------0.67---------------