ID: uc003srz.2_intron_16_0_chr7_11151095_f.3p
GENE: (17)
chr7:11208843-11209092+


(6)
B-CELL
(1)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
HELA
(5)
LIVER
(1)
OTHER
(1)
RRP40.ip
(8)
SKIN
(3)
UTERUS

Sense strand
ACATACAGAAAATTTTAATGTGTTCTATAAAACAGCACCTATTGCAAATATTTAAATGTTACATAATTTTACCATTTGTGTTTAGGATTATTAGAATCACAGTAGTTCATAGTTCTACAGATGCAGTTAAAATCTGTCAAGTATAGCTGATAAATGCTCTAAAGTTTATATTTTAATGTTTTCTAAAATTTATTTCACAGGAAGATGAAAATGAAGCTGAAAGAAAAAATATATCTCAGGAGCTCAACAT
......................................................................................................(((((.(((.((..((((((.........)))))).)).))))))))......((..((((((....))))))..)).......................................................................
...................................................................................................100..................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343336SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................GTTCATAGTTCTACAGTCCG..............................................................................................................................2013.000.0010.00----------1.00---1.00------1.00--------------------
.........................................................................................................TTCATAGTTCTACAGTCC...............................................................................................................................1811.000.00-2.001.00---3.00---2.001.00-------1.00-----------1.00-----------
.........................................................................................................TTCATAGTTCTACAGTCCG..............................................................................................................................195.000.00--2.00--1.00---------------------------1.001.00--------
........................................................................................................GTTCATAGTTCTACAGACCGA.............................................................................................................................214.000.00-------2.00---------------1.00--------1.00----------
........................................................................................................GTTCATAGTTCTACAGTCC...............................................................................................................................193.000.00-2.00---------------------------1.00-------------
................................................................................................................................................................................TGTTTTCTAAAATTTATTTCACAG..................................................2412.002.00------------2.00------------------------------
....................................................................................GGATTATTAGAATCAAAT....................................................................................................................................................182.000.00---------2.00---------------------------------
........................................................................................................GTTCATAGTTCTACAGT.................................................................................................................................172.000.00-1.001.00----------------------------------------
........................................................................................................GTTCATAGTTCTACAGTC................................................................................................................................182.000.00--------1.00-----------1.00----------------------
........................................................................................................GTTCATAGTTCTACATAC................................................................................................................................181.000.00-----1.00-------------------------------------
...........................................................................................................CATAGTTCTACAGATGATC............................................................................................................................191.000.00---------------------------1.00---------------
...............................................................................................................................................................TAAAGTTTATATTTTAATGTTTTCTA.................................................................2611.001.00----------------1.00--------------------------
.........................................................................................ATTAGAATCACAGTAGTTCATAGT.........................................................................................................................................2411.001.00------------------------1.00------------------
.........................................................................................................TTCATAGTTCTACAGTTCG..............................................................................................................................191.000.00-------------------------------------1.00-----
.........................................................................................................TTCATAGTTCTACAGTC................................................................................................................................171.000.00--------1.00----------------------------------
....................................................................................GGATTATTAGAATCACAC....................................................................................................................................................181.000.00----------------------------1.00--------------
........................................................................................................GTTCATAGTTCTACAGGATC..............................................................................................................................201.000.00-----1.00-------------------------------------
........................................................................................................GTTCATAGTTCTACAGGTCC..............................................................................................................................201.000.00-------------------------1.00-----------------
.........................................................................................................TTCATAGTTCTACAGTTC...............................................................................................................................181.000.00----------------------------------------1.00--
.........................................................................................................TTCATAGTTCTACAGTCG...............................................................................................................................181.000.00------------------1.00------------------------
....................................................................................................................................................................................................................GAAGCTGAAAGAAAAAAT....................1811.001.00--------------1.00----------------------------
........................................................................................................GTTCATAGTTCTACAGTCGA..............................................................................................................................201.000.00--------------------------1.00----------------
.........................................................................................................TTCATAGTTCTACAGTCGA..............................................................................................................................191.000.00-----------------1.00-------------------------

Antisense strand
ACATACAGAAAATTTTAATGTGTTCTATAAAACAGCACCTATTGCAAATATTTAAATGTTACATAATTTTACCATTTGTGTTTAGGATTATTAGAATCACAGTAGTTCATAGTTCTACAGATGCAGTTAAAATCTGTCAAGTATAGCTGATAAATGCTCTAAAGTTTATATTTTAATGTTTTCTAAAATTTATTTCACAGGAAGATGAAAATGAAGCTGAAAGAAAAAATATATCTCAGGAGCTCAACAT
......................................................................................................(((((.(((.((..((((((.........)))))).)).))))))))......((..((((((....))))))..)).......................................................................
...................................................................................................100..................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343336SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................AGTTCATAGTTCTACCTG................................................................................................................................. 187.000.00-------------2.00-------1.00--------1.00----1.001.00-1.00----
.......................................................................................................................................................................................................GGAAGATGAAAATGAAACTG............................... 204.000.00----3.00----------------------------------1.00---
.................................................................................................................................................................................................................................AAAATATATCTCAGGAAC....... 184.000.00---4.00---------------------------------------
...........................................................................................................ATCTGTAGAACTATG................................................................................................................................ 1570.140.14-----------------------------------------0.14-
....ACATTAAAATTTTCTGT..................................................................................................................................................................................................................................... 1790.110.11------------------------------------------0.11