ID: uc003son.3_intron_3_0_chr7_5545262_r.5p
GENE: (1)
chr7:5553088-5553337-


(1)
B-CELL
(2)
BRAIN
(7)
BREAST
(11)
CELL-LINE
(10)
CERVIX
(2)
HEART
(2)
HELA
(4)
LIVER
(2)
OTHER
(24)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TCCCGCGGCCGCGGTTCGGACCCGCCGGCGACATGGCCAGCTCCGGAGAGGTACTGTCCGCGACTGTCTCCGCTCTGCTTCTGCCTCGGCGGCCTCGGTCTCCCTGGGTTCTTCCATCCCGACCCGGGTTCCCTTGCATCCTTTCTATCCCGACCCCTACCCCGCCCCGTCCTTCCCATCCTGACCCTGGCCTTGCCCCTGCTCCCGTCCTTCCCGCATCCTGTCCCCAAGACTCCTACCCTGTCTCGGA
..................................................(((..(((...(((((...(((((..((....))...)))))...)))))..((((((((..........)))))))).......................)))...)))..........................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR040011(GSM532896)
G529T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR191524(GSM715634)
119genomic small RNA (size selected RNA from . (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................TCCCGACCCCTACCCGCC.....................................................................................1828.000.008.001.00---3.00--1.001.00--1.001.00-1.001.00--1.00---------1.00---1.00-1.001.001.001.00-------1.001.00------------1.00------
...................................................................................................................................................TCCCGACCCCTACCCGCCC....................................................................................1922.000.005.003.003.00-1.00----1.001.00-----1.00--1.00---1.00---1.00-------------1.00--1.00-----1.00-------1.00--------
.................................TGGCCAGCTCCGGAGAGG.......................................................................................................................................................................................................1814.004.00---4.00---------------------------------------------------------------
.CCCGCGGCCGCGGTT..........................................................................................................................................................................................................................................1512.002.00--------------2.00----------------------------------------------------
...................................................................................................................................................TCCCGACCCCTACCCAAG.....................................................................................181.000.00--1.00----------------------------------------------------------------
........................................................TCCGCGACTGTCTCCGC.................................................................................................................................................................................1711.001.00--------1.00----------------------------------------------------------
................CGGACCCGCCGGCGAGAA........................................................................................................................................................................................................................181.000.00------------1.00------------------------------------------------------
..................................GGCCAGCTCCGGAGAGGACAT...................................................................................................................................................................................................211.000.00-------------------------------------------------------1.00-----------
...................................................................................................................................................TCCCGACCCCTACCCCCCCT...................................................................................201.000.00-------------1.00-----------------------------------------------------
..............................ACATGGCCAGCTCCGGAGAGGACA....................................................................................................................................................................................................241.000.00--------------------------------1.00----------------------------------
.....................................................................................................................................................................................................................CCGCATCCTGTCCCCGG....................171.000.00-------------------------------------------------1.00-----------------
........................................................................................................................GACCCGGGTTCCCTTGTTTC..............................................................................................................201.000.00----------------------------------1.00--------------------------------
...................................................................................................................................................................................................CCCCTGCTCCCGTCCTTCC....................................1911.001.00----1.00--------------------------------------------------------------
..................................................GTACTGTCCGCGACTGT.......................................................................................................................................................................................1711.001.00----1.00--------------------------------------------------------------
...CGCGGCCGCGGTTCGGACGGGG.................................................................................................................................................................................................................................221.000.00------------------------------1.00------------------------------------
............................................................................................................TTCTTCCATCCCGACGGTC...........................................................................................................................191.000.00--------------------------1.00----------------------------------------
...................................................................................................................................................TCCCGACCCCTACCCTC......................................................................................171.000.00-----------------------------------------------------1.00-------------
.........................................TCCGGAGAGGTACTGTC................................................................................................................................................................................................1711.001.00----------------------1.00--------------------------------------------
..............................................................ACTGTCTCCGCTCTGCTTCTGC......................................................................................................................................................................2211.001.00----------------------------------------1.00--------------------------
.....CGGCCGCGGTTCGGACCCG..................................................................................................................................................................................................................................1911.001.00---------------------------------------1.00---------------------------
...........CGGTTCGGACCCGCCGGCGACATGGCCA...................................................................................................................................................................................................................2811.001.00--------------------------------------------------------1.00----------
................CGGACCCGCCGGCGACA.........................................................................................................................................................................................................................1711.001.00-------1.00-----------------------------------------------------------
.................................................................................................................CCATCCCGACCCGGGGAGG......................................................................................................................1921.000.50-------------------------------------------------------------0.500.50----
............................................GGAGAGGTACTGTCCGCGACTGTAT.....................................................................................................................................................................................251.000.00----------1.00--------------------------------------------------------
............................................................................................................................................................CTACCCCGCCCCGTCCGC............................................................................181.000.00---------------1.00---------------------------------------------------
.................................................................................................................CCATCCCGACCCGGG..........................................................................................................................1520.500.50---------------------------------------------------------------0.50---
..................................................................................................................................................................................................GCCCCTGCTCCCGTCC........................................1640.250.25----------------------------------------------------------------0.25--

Antisense strand
TCCCGCGGCCGCGGTTCGGACCCGCCGGCGACATGGCCAGCTCCGGAGAGGTACTGTCCGCGACTGTCTCCGCTCTGCTTCTGCCTCGGCGGCCTCGGTCTCCCTGGGTTCTTCCATCCCGACCCGGGTTCCCTTGCATCCTTTCTATCCCGACCCCTACCCCGCCCCGTCCTTCCCATCCTGACCCTGGCCTTGCCCCTGCTCCCGTCCTTCCCGCATCCTGTCCCCAAGACTCCTACCCTGTCTCGGA
..................................................(((..(((...(((((...(((((..((....))...)))))...)))))..((((((((..........)))))))).......................)))...)))..........................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR040011(GSM532896)
G529T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR191524(GSM715634)
119genomic small RNA (size selected RNA from . (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................................CCTGCTCCCGTCCTTCGG................................... 183.000.00-------1.00----------1.00-----1.00------------------------------------------
.....................................................................................................................................................................................................CCTGCTCCCGTCCTTCCGGC................................. 203.000.00---------------------1.00---1.00-----------------1.00-----------------------
.....................................................................................................................................................................................................CCTGCTCCCGTCCTTCGGC.................................. 193.000.00-1.00----------------1.00--------------------------------1.00---------------
...................................................................................................................................................................................................CCCCTGCTCCCGTCCTTACA................................... 202.000.00------2.00------------------------------------------------------------
.....................................................................................................................................................................................................CCTGCTCCCGTCCTTCCG................................... 182.000.00-----------------1.00----------------------------------1.00--------------
.............................................................................................................................................................................................ACGGGAGCAGGGGCAAGGC.......................................... 1911.001.00-------------------------------1.00-----------------------------------
.............................................AGACAGTCGCGGACAGTACCTCTC..................................................................................................................................................................................... 2411.001.00----------------------------1.00--------------------------------------
..........................................................................................................................................................CCCTACCCCGCCCCGAC............................................................................... 171.000.00------------------------------------------1.00------------------------
...............................................................CTGTCTCCGCTCTGCTAGGC....................................................................................................................................................................... 201.000.00-----------------------------------------------------------1.00-------
.........................................................................................................................................................................................................ATGCGGGAAGGACGGGAG............................... 1811.001.00------------------------------------------------1.00------------------
.......................................................................................................................................................GACCCCTACCCCGCCCGAG................................................................................ 191.000.00---------------------------------------------1.00---------------------
.....................................................................................................................................................................CCCGTCCTTCCCATCCAGT.................................................................. 191.000.00---------------------------------------------------------1.00---------
...................................................................................................................................................................................................CCCCTGCTCCCGTCCTTAC.................................... 191.000.00------1.00------------------------------------------------------------
..............................................................................................................................................................ACCCCGCCCCGTCCTTT........................................................................... 171.000.00------------------------------------------------------1.00------------
.......................................................................................................................................................................................................TGCTCCCGTCCTTCCCAGGC............................... 201.000.00-----------1.00-------------------------------------------------------
.............GTTCGGACCCGCCGGCGGT.......................................................................................................................................................................................................................... 191.000.00-----------1.00-------------------------------------------------------
.....................................................................................................................................................................................................CCTGCTCCCGTCCTTCCGG.................................. 191.000.00-------1.00-----------------------------------------------------------
..................................................................................................................................CCCTTGCATCCTTTCTTTT..................................................................................................... 191.000.00-----------------1.00-------------------------------------------------
.............................................................................................................................................................................................AGGACGGGAGCAGGGGCAAGGC....................................... 2211.001.00--------------------1.00----------------------------------------------
......................................................................................................................................................................................................GAAGGACGGGAGCAG..................................... 1540.250.25--------------------0.25----------------------------------------------
..........................................................................................................................................................ACGGGGCGGGGTAGGG................................................................................ 1640.250.25--------0.25----------------------------------------------------------
..................................................................................CGAGGCCGCCGAGGC......................................................................................................................................................... 1540.250.25-----------------------------------------------------------------0.25-
..............................................................................................................................................................................GCCAGGGTCAGGATGGG........................................................... 1750.200.20------------------------------------------------------------------0.20