ID: uc003qsr.2_intron_10_0_chr6_160209176_r.3p
GENE: (1)
chr6:160209126-160209375-


(1)
AGO1.ip 		(1)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(1)
HEART 		(4)
HELA 		(2)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
TGTTGGGATTACACCTGTGAGCCACAGTGTCTGGCCCCATTTACACTCTTAGTAGGTGGTTTTTAAATAATTAACACAGATTTGTAGATTTGGGAAATACGGGGGCTGTTGGATGTCATTTACCTTTAGGCTGAAATTACTGTCTTTCAGAGTTGTGGCTTATCCTCATTTCTTTTTTATTTTTAATTGATTGTCTACAGTTATGGCTGCAGCTTCGATTGCCAATATTGTAAAAAGTTCTCTTGGTCCA
.........................................................................................................................................................(((((...(((........................)))...)))))...................................................
......................................................................................................................................................151..............................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)		SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAATTG.............................................................31137.0037.0016.0017.002.00-2.00-------------------------------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAACTG.............................................................3117.001.00--6.00-1.00-------------------------------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAATCG.............................................................315.000.00--3.00-2.00-------------------------------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAATT..............................................................3013.003.001.001.00--1.00-------------------------------
.........................................................................................................................................................................................................TATGGCTGCAGCTTCGATTGC............................2122.502.50-------2.000.50---------------------------
...........................................................................................................................................................TGGCTTATCCTCATTTCTT............................................................................1912.002.00---2.00--------------------------------
.....................................................................................................................................................................TCATTTCTTTTTTATTTTCAC................................................................212.000.00---2.00--------------------------------
.............................................................................................................................................................GCTTATCCTCATTTCTTTTTTATTTTTAATTG.............................................................3212.002.00---2.00--------------------------------
...................................................................................................................................................................................TTTTTAATTGATTGTCTACAGA.................................................221.000.00-------------1.00----------------------
.........................................................................................................................................................................................................TATGGCTGCAGCTTCGATA..............................191.000.00---------1.00--------------------------
.............................................................................AGATTTGTAGATTTGGGAAATACGG....................................................................................................................................................2511.001.00---------------1.00--------------------
.........................................................................................................................................................................................................................ATTGCCAATATTGTAAAAAGTTC..........2311.001.00-----------1.00------------------------
.............................................................................................................................................GTCTTTCAGAGTTGTGGCTCCT.......................................................................................221.000.00---------------------------1.00--------
...........................................................................................................................................................TGGCTTATCCTCATTTCTTTTT.........................................................................2211.001.00-------------------1.00----------------
...................................................................................GTAGATTTGGGAAATACGGGG..................................................................................................................................................2111.001.00------1.00-----------------------------
.........................................................................ACACAGATTTGTAGATTTGGGAAATACG.....................................................................................................................................................2811.001.00----------1.00-------------------------
......................................................................................................................................................................................................................................TAAAAAGTTCTCTTGGGATA201.000.00---------------------1.00--------------
........................................................................................................................................................................................................................................AAAAGTTCTCTTGGTCCAGGTG221.000.00-----------------1.00------------------
...........................................................................ACAGATTTGTAGATTTGGGAAAT........................................................................................................................................................2311.001.00------1.00-----------------------------
..................................................................................................................................................................................ATTTTTAATTGATTGTCTACAGA.................................................231.000.00------------------------1.00-----------
..................................................................................................ACGGGGGCTGTTGGATGTCAT...................................................................................................................................2111.001.00----------------------1.00-------------
.................................................................................................................................................................................................TCTACAGTTATGGCTGCAGCTTCGATTGCC...........................3011.001.00-----1.00------------------------------
................................................................................................ATACGGGGGCTGTTGGATGTCATTT.................................................................................................................................2511.001.00--------------1.00---------------------
......................................................................................................................................................................CATTTCTTTTTTATTTTTCCA...............................................................211.000.00--1.00---------------------------------
..................................................................................................................................................................................ATTTTTAATTGATTGTCTACA...................................................2111.001.00--------------------------1.00---------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAATTT.............................................................3111.003.001.00-----------------------------------
...................................................................................................CGGGGGCTGTTGGATTT......................................................................................................................................171.000.00--------------------1.00---------------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAATTGA............................................................3211.001.00---1.00--------------------------------
........................................................................................................................................................................TTTCTTTTTTATTTTTAATCTCT...........................................................231.000.00---1.00--------------------------------
......................................................................................................................................................................CATTTCTTTTTTATTTTTATGTC.............................................................231.000.00-----1.00------------------------------
...................................................................................................................................................................................TTTTTAATTGATTGTCTACA...................................................2011.001.00-----------------------1.00------------
......................................................................................................................................................................CATTTCTTTTTTATTTTCTG................................................................201.000.00--1.00---------------------------------
..........................................................................................................................................................................................................ATGGCTGCAGCTTCGATTGCCAAT........................2421.001.00-----------------------------0.50-----0.50
.........................................................................................................................................................................................ATTGATTGTCTACAGTTA...............................................1811.001.00--------1.00---------------------------
...................................................................................................................................................................CCTCATTTCTTTTTTATTTTT..................................................................2111.001.00---1.00--------------------------------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAACTT.............................................................3111.001.00----1.00-------------------------------
..............................................................................................................................................................CTTATCCTCATTTCTTTTTTATTTTTAA................................................................2811.001.00----1.00-------------------------------
...................................................................................................................................................................................................................GCTTCGATTGCCAATATTGTA..................2120.500.50--------------------------------0.50---
..........................................................................................................................................................................................................ATGGCTGCAGCTTCGATTGCC...........................2120.500.50---------0.50--------------------------
..........................................................................................................................................................................................................ATGGCTGCAGCTTCGATTGC............................2020.500.50------------------------------0.50-----
..........................................................................................................................................................................................................ATGGCTGCAGCTTCGATTGCCAATAT......................2620.500.50----------------------------0.50-------
...................................................................................................................................................................CCTCATTTCTTTTTTATTT....................................................................1940.500.500.25-0.25---------------------------------
........................................................................................................................................................................................................TTATGGCTGCAGCTTCGATT..............................2020.500.50----------0.50-------------------------
....................................................................................................................................................................................................................CTTCGATTGCCAATATTGTAAA................2220.500.50-------------------------------0.50----
..................................................................................................................................................................................................................AGCTTCGATTGCCAATATTGTAAAAAG.............2720.500.50----------------------------------0.50-
..................................................................................................................................................................................ATTTTTAATTGATTGTC.......................................................1770.140.14---0.14--------------------------------

Antisense strand
TGTTGGGATTACACCTGTGAGCCACAGTGTCTGGCCCCATTTACACTCTTAGTAGGTGGTTTTTAAATAATTAACACAGATTTGTAGATTTGGGAAATACGGGGGCTGTTGGATGTCATTTACCTTTAGGCTGAAATTACTGTCTTTCAGAGTTGTGGCTTATCCTCATTTCTTTTTTATTTTTAATTGATTGTCTACAGTTATGGCTGCAGCTTCGATTGCCAATATTGTAAAAAGTTCTCTTGGTCCA
.........................................................................................................................................................(((((...(((........................)))...)))))...................................................
......................................................................................................................................................151..............................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)		SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
....................................AAACCACCTACTAAGAGTGTAAATGG............................................................................................................................................................................................ 2611.001.00-------------------------1.00----------
....................................................TAGGTGGTTTTTAAATTAT................................................................................................................................................................................... 191.000.00------------------1.00-----------------
...........................................................................................................................................................................................TAACTGTAGACAATCA............................................... 1611.001.00------------1.00-----------------------
................................................................................................................TCAGCCTAAAGGTAAATGACAT.................................................................................................................... 2211.001.00----------------1.00-------------------
....................................................................................................................................TCTGAAAGACAGTAATTTC................................................................................................... 1920.500.50---------------------------------0.50--