ID: uc003qpg.2_intron_3_0_chr6_153296757_r.5p
GENE: (1)
chr6:153303792-153304041-


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(16)
BREAST 		(5)
CELL-LINE 		(28)
CERVIX 		(1)
HEART 		(1)
OTHER 		(24)
SKIN 		(1)
XRN.ip

Sense strand
CGCCAGCCCCAGCGCAGTGACAGCCGCCGGGCGCCCTCGACCCTCGGATAGTGAGTGAGGGGAGCGGTCGCGAGGGGGGCGCGCACGCCAGGAGGGGTGCACGGGGAGGGTCGCAGCCTGAGACCCTGACCCGACGTCCCTCGGAGCCTGGACGCGCGGCCATGCCACACGCCCGGCCTCGGGCGGCGGCAGCGGTTCCTGGGTCCGGGAGGAGGGCGGCTGGGTGTCGGGGGGAAGCCAGAAGAGCCAG
...............................................................((.(((((..((.((.(((((...(((((.((((.((.((((.((((((.((...)).))))))..))))..)).))))....)))))..))))).))...))...((((((....))))))))))).)).........................................................
...............................................................64......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM532889(GSM532889)
G576N. (cervix)		GSM532884(GSM532884)
G871T. (cervix)		GSM532887(GSM532887)
G761N. (cervix)		GSM532888(GSM532888)
G761T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM532883(GSM532883)
G871N. (cervix)		GSM532890(GSM532890)
G576T. (cervix)		TAX577742(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		TAX577579(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		SRR040042(GSM532927)
G428N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040006(GSM532891)
G601N. (cervix)		GSM532873(GSM532873)
G699N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532882(GSM532882)
G696T. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................CGCGAGGGGGGCGCGGG.....................................................................................................................................................................17182.000.0046.0043.0028.0023.001.00-5.003.003.001.00--1.00-1.00--1.001.00---2.002.001.002.001.00-2.00---1.00---1.00--1.00-----1.001.00--1.00--1.00----1.00--1.00---1.001.001.00---1.00--1.00-1.00---
....................................................................CGCGAGGGGGGCGCGGGC....................................................................................................................................................................1873.000.0021.005.004.003.004.00--1.001.00-1.004.001.002.00--2.001.00--2.00---1.00-1.002.00--1.001.00-1.00-1.00--1.00-1.001.001.001.00----1.00-1.001.00----1.00------1.00-----1.00----1.00-1.00--
....................................................................CGCGAGGGGGGCGCGGGG....................................................................................................................................................................1814.000.006.002.004.001.00-----1.00---------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGA....................................................................................................................................................................1813.000.007.002.001.002.00---1.00-----------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGCA...................................................................................................................................................................1913.000.001.001.00--1.005.00--1.002.00-------------------1.00--------------------------------1.00----------------
....................................................................CGCGAGGGGGGCGCGTG.....................................................................................................................................................................176.000.003.003.00-----------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGT.....................................................................................................................................................................174.000.001.001.001.001.00---------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGA.....................................................................................................................................................................173.000.002.001.00-----------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGG......................................................................................................................................................................163.000.00----2.00---------1.00----------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGT....................................................................................................................................................................183.000.00-2.00-1.00---------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGAA...................................................................................................................................................................192.000.001.00--------------------1.00---------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGCA....................................................................................................................................................................182.000.00-2.00-----------------------------------------------------------------------------
....................................................................................................................................................................................GGGCGGCGGCAGCGGTGGCG..................................................202.000.00---------------1.00---------------------------------------1.00-----------------------
..................................................................................................................................................................................................GTTCCTGGGTCCGGGTAG......................................181.000.00-------------------1.00-----------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGAGC....................................................................................................................................................................181.000.00-------------------------------------------------------------1.00-----------------
....................................................................CGCGAGGGGGGCGCGGTG....................................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------
.....................................................................GCGAGGGGGGCGCGCGC....................................................................................................................................................................171.000.00---------------------1.00---------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGAG.....................................................................................................................................................................171.000.00--1.00----------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGGA...................................................................................................................................................................191.000.00-----1.00-------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGCT...................................................................................................................................................................191.000.00---------1.00---------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGCACGATAA...............................................................................................................................................................231.000.00-1.00-----------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGTC....................................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................................................GTCGGGGGGAAGCCACAC.......181.000.00--------------------------------------------------------------------1.00----------
.....................................................................................................................................................................................GGCGGCGGCAGCGGT......................................................1501.001.00------------------------------------------------------------------------1.00------
...............................................................................................................................................................................................................GGAGGAGGGCGGCTGTTC.........................181.000.00-----------------------------------------------------------1.00-------------------
....................................................................CGCGAGGGGGGCGCGTGT....................................................................................................................................................................181.000.00-------------------------------------------------------------------1.00-----------
....................................................................CGCGAGGGGGGCGCGGCCG...................................................................................................................................................................191.000.00-----------------------------------------------------1.00-------------------------
.................................................................................................................................................................................................GGTTCCTGGGTCCGGGGTG......................................191.000.00-------------------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................GGGTGTCGGGGGGAAGTGCG.........201.000.00---------------1.00---------------------------------------------------------------
................................................................................................................................................AGCCTGGACGCGCGGACG........................................................................................181.000.00------------------------------------------------------1.00------------------------
....................................................................CGCGAGGGGGGCGCGGCC....................................................................................................................................................................181.000.00---1.00---------------------------------------------------------------------------
...........................................................................................................................................CTCGGAGCCTGGACGCGCGGCCATG......................................................................................2511.001.00-----------------------------------------------------------------------1.00-------
......................................................................................GCCAGGAGGGGTGCAAA...................................................................................................................................................171.000.00----------1.00--------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGAC...................................................................................................................................................................191.000.001.00------------------------------------------------------------------------------
..........................................................GGGGAGCGGTCGCGAGAC..............................................................................................................................................................................181.000.00------------------1.00------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGGGTC...................................................................................................................................................................191.000.00----------1.00--------------------------------------------------------------------
.............................................................................................................................................................................................................................GGGTGTCGGGGGGAAGGG...........181.000.00----------------------------------------------------------1.00--------------------
.......CCCAGCGCAGTGACAGGG.................................................................................................................................................................................................................................181.000.00----------1.00--------------------------------------------------------------------
..................GACAGCCGCCGGGCGC........................................................................................................................................................................................................................1611.001.00----------------------------------1.00--------------------------------------------
.................TGACAGCCGCCGGGCGGGGC.....................................................................................................................................................................................................................201.000.00-------------------------------------1.00-----------------------------------------
....................................................................CGCGAGGGGGGCGCGGC.....................................................................................................................................................................171.000.00-1.00-----------------------------------------------------------------------------
..............................................................................................................................................................................................................................GGTGTCGGGGGGAAGGGCG.........191.000.00-----------------------------------------------1.00-------------------------------
....................................................................CGCGAGGGGGGCGCGGGCC...................................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGCGG....................................................................................................................................................................1820.500.500.50------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CGGGGGGAAGCCAGA........1520.500.50--------------0.50----------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGCG.....................................................................................................................................................................1720.500.500.50------------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGCGGCG..................................................................................................................................................................2020.500.50------------------------------------------------------------------------------0.50
....................................................................CGCGAGGGGGGCGCGCT.....................................................................................................................................................................1720.500.50--0.50----------------------------------------------------------------------------
....................................................................CGCGAGGGGGGCGCGC......................................................................................................................................................................1620.500.50-------------0.50-----------------------------------------------------------------

Antisense strand
CGCCAGCCCCAGCGCAGTGACAGCCGCCGGGCGCCCTCGACCCTCGGATAGTGAGTGAGGGGAGCGGTCGCGAGGGGGGCGCGCACGCCAGGAGGGGTGCACGGGGAGGGTCGCAGCCTGAGACCCTGACCCGACGTCCCTCGGAGCCTGGACGCGCGGCCATGCCACACGCCCGGCCTCGGGCGGCGGCAGCGGTTCCTGGGTCCGGGAGGAGGGCGGCTGGGTGTCGGGGGGAAGCCAGAAGAGCCAG
...............................................................((.(((((..((.((.(((((...(((((.((((.((.((((.((((((.((...)).))))))..))))..)).))))....)))))..))))).))...))...((((((....))))))))))).)).........................................................
...............................................................64......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM532889(GSM532889)
G576N. (cervix)		GSM532884(GSM532884)
G871T. (cervix)		GSM532887(GSM532887)
G761N. (cervix)		GSM532888(GSM532888)
G761T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM532883(GSM532883)
G871N. (cervix)		GSM532890(GSM532890)
G576T. (cervix)		TAX577742(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		TAX577579(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		SRR040042(GSM532927)
G428N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040006(GSM532891)
G601N. (cervix)		GSM532873(GSM532873)
G699N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532882(GSM532882)
G696T. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................CTCCCCGTGCACCCCTCCT.............................................................................................................................................. 1911.001.00--------------------------------------------1.00----------------------------------
..............................CCGAGGGTCGAGGGCGC........................................................................................................................................................................................................... 1711.001.00------------1.00------------------------------------------------------------------
...........GCGGCTGTCACTGCGC............................................................................................................................................................................................................................... 1620.500.50-----------------------------------------------------------------------------0.50-
..............................................................................................................................................................................GCCGCCGCCCGAGGCC............................................................ 1650.200.20----------0.20--------------------------------------------------------------------