ID: uc003pwj.2_intron_1_0_chr6_116427499_f.5p
GENE: (2)
chr6:116427449-116427698+


(1)
AGO2.ip
(1)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(2)
HEART
(2)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
GGGTACGATAAGGAATTGCTCAATGTGACCCCAGAGGATTGGGATTTCTGGTAAGTTCTTTTTTTTTTTTTTTTTTTAAGTCTGTACATTTCCTGTGGTTCTAATTGTTACTGATAAAACTGTAATGCTTTCTCTTCTAAGAAGATGGAATGTGAAATGTGAGATTGAGTCAAAGGACAAATGCCTTCTATATTAAAAGTTTTGTATTTAATGAATTAAAGTGTTTTCTACTTTAAACAAGTTTAGACTT
......................................................(((((...(((((((........((((...((((.......((((..........)))).......))))..))))........))))))).)))))...................................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.....................................................AGTTCTTTTTTTTTTTTTTTTAAGC............................................................................................................................................................................255.000.003.002.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCCCC..........................................................................................................................................................................274.000.004.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTGGGT...............................................................................................................................................................................244.000.001.003.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTCAGG.............................................................................................................................................................................243.000.003.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCCC..........................................................................................................................................................................273.000.003.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTGGG................................................................................................................................................................................233.000.00-3.00----------------
............................................................................................................................................GAAGATGGAATGTGACCT............................................................................................183.000.00----1.002.00------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCAGG..........................................................................................................................................................................272.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCGCC.........................................................................................................................................................................282.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCG...........................................................................................................................................................................262.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCGCC...........................................................................................................................................................................262.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTGGCC...........................................................................................................................................................................262.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCTGC.........................................................................................................................................................................282.000.002.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTAGAC...........................................................................................................................................................................272.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCAGG.........................................................................................................................................................................282.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAACC.........................................................................................................................................................................282.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCGCC..........................................................................................................................................................................272.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTAGC...........................................................................................................................................................................262.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAAGC.........................................................................................................................................................................282.000.002.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTCAGG............................................................................................................................................................................251.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTCGT.............................................................................................................................................................................241.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCGC..........................................................................................................................................................................271.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTCGAC............................................................................................................................................................................251.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCGCT..........................................................................................................................................................................271.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTTGGT...............................................................................................................................................................................241.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTCGG.............................................................................................................................................................................241.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTAGGG............................................................................................................................................................................251.000.001.00-----------------
...............................................................................................................................................GATGGAATGTGAAATCATC........................................................................................191.000.00---------------1.00--
........................................................TCTTTTTTTTTTTTTTTTTTTAAGCGG.......................................................................................................................................................................271.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCCAG..........................................................................................................................................................................271.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTGGTT.............................................................................................................................................................................251.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTGAAC...............................................................................................................................................................................231.000.00-1.00----------------
...................................................TAAGTTCTTTTTTTTTTTTTTTTTCGAG...........................................................................................................................................................................281.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTCTAG.............................................................................................................................................................................241.000.001.00-----------------
.....................................................................................ACATTTCCTGTGGTTAAC...................................................................................................................................................181.000.00--1.00---------------
.................................GAGGATTGGGATTTCTG........................................................................................................................................................................................................1711.001.00--------1.00---------
...................................................TAAGTTCTTTTTTTTTTTTTTGGGT..............................................................................................................................................................................251.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTAACC..........................................................................................................................................................................271.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTGCT............................................................................................................................................................................261.000.001.00-----------------
..GTACGATAAGGAATTGCTCAATGTG...............................................................................................................................................................................................................................2511.001.00--------------1.00---
....................................................AAGTTCTTTTTTTTTTTTTGGG................................................................................................................................................................................221.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAT...........................................................................................................................................................................261.000.00-1.00----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTTTAAGC.........................................................................................................................................................................291.000.001.00-----------------
......................................................GTTCTTTTTTTTTTTTTTTTTTTAAAGGG.......................................................................................................................................................................291.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTGGG.................................................................................................................................................................................221.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCCCA.........................................................................................................................................................................281.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTGAAC.............................................................................................................................................................................251.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAACCCG.......................................................................................................................................................................301.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTGAAC.................................................................................................................................................................................211.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCCCC.........................................................................................................................................................................281.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTCGCC.............................................................................................................................................................................251.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAACCC........................................................................................................................................................................291.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTTTTTTGGG...........................................................................................................................................................................281.000.00-1.00----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTAAGC...........................................................................................................................................................................271.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTTGGG...............................................................................................................................................................................241.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCGGA...........................................................................................................................................................................261.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTCCC............................................................................................................................................................................261.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTGGG.............................................................................................................................................................................251.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCTTC..........................................................................................................................................................................271.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTATGG..........................................................................................................................................................................271.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCCCG...........................................................................................................................................................................261.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTATGC............................................................................................................................................................................251.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCAC..........................................................................................................................................................................271.000.00-1.00----------------
....................................................AAGTTCTTTTTTTTTTTTTTGCAG..............................................................................................................................................................................241.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCAGG...........................................................................................................................................................................261.000.00-1.00----------------
....................................................AAGTTCTTTTTTTTTTTTTTGTC...............................................................................................................................................................................231.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTCCCG.............................................................................................................................................................................241.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTTGAA...........................................................................................................................................................................271.000.001.00-----------------
........................................................TCTTTTTTTTTTTTTTTTTTTAAGTCTATTG...................................................................................................................................................................311.000.00---1.00--------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTGTAG...........................................................................................................................................................................261.000.00-1.00----------------
........................................................TCTTTTTTTTTTTTTTTTTTTAAGTTGTA.....................................................................................................................................................................291.000.00---1.00--------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTCTCC.........................................................................................................................................................................281.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCCAC..........................................................................................................................................................................271.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTGGGT...........................................................................................................................................................................261.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAGCCG........................................................................................................................................................................291.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTGCT............................................................................................................................................................................251.000.00-1.00----------------
....................................................AAGTTCTTTTTTTTTTTTTCGAG...............................................................................................................................................................................231.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTAAAC............................................................................................................................................................................261.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTGGGT..............................................................................................................................................................................241.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTCTGC..........................................................................................................................................................................271.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTTCGAG..........................................................................................................................................................................281.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTTAAGG..........................................................................................................................................................................281.000.00-1.00----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTAGG.............................................................................................................................................................................251.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTAAGC.............................................................................................................................................................................251.000.00-1.00----------------
..........................................................TTTTTTTTTTTTTTTTTTTAAGTCCTTT....................................................................................................................................................................281.000.00---1.00--------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTAC...........................................................................................................................................................................261.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTAAAC............................................................................................................................................................................251.000.001.00-----------------
.........................................................CTTTTTTTTTTTTTTTTTTTAAGTTCAG.....................................................................................................................................................................281.000.00--1.00---------------
....................................................AAGTTCTTTTTTTTTTTTTTTTTAGGC...........................................................................................................................................................................271.000.001.00-----------------
......................................................GTTCTTTTTTTTTTTTTTTTTTTAAAGG........................................................................................................................................................................281.000.00-------1.00----------
...................................................TAAGTTCTTTTTTTTTTTTTTTTGGG.............................................................................................................................................................................261.000.001.00-----------------
............................................................................TAAGTCTGTACATTTTTG............................................................................................................................................................181.000.00---------1.00--------
..........................................................TTTTTTTTTTTTTTTTTTTAAGTCCGGC....................................................................................................................................................................281.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTGGGG...........................................................................................................................................................................261.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTAAGG............................................................................................................................................................................261.000.00--1.00---------------
...................................................TAAGTTCTTTTTTTTTTTTTTTGGGT.............................................................................................................................................................................261.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTTTGGGG.............................................................................................................................................................................261.000.001.00-----------------
.............................................................TTTTTTTTTTTTTTTTAAGTCTCTCC...................................................................................................................................................................261.000.00-1.00----------------
........................................................TCTTTTTTTTTTTTTTTTTTTAAGTTGG......................................................................................................................................................................281.000.001.00-----------------
................................AGAGGATTGGGATTTCTGTTGC....................................................................................................................................................................................................221.000.00----1.00-------------
...................................................TAAGTTCTTTTTTTTTTTTTTTTTTTGGGT.........................................................................................................................................................................301.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTTTTTTTTGGGT............................................................................................................................................................................271.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTGGC..................................................................................................................................................................................201.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTTTTTTAGAC............................................................................................................................................................................261.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCCGG...........................................................................................................................................................................261.000.001.00-----------------
...................................................TAAGTTCTTTTTTTTTGGG....................................................................................................................................................................................191.000.00-1.00----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCATG...........................................................................................................................................................................261.000.001.00-----------------
...............................................................................................................................................................................................................................TTTTCTACTTTAAACATTG........191.000.00------1.00-----------
....................................................AAGTTCTTTTTTTTTTTTTTCCT...............................................................................................................................................................................231.000.00-1.00----------------
........................................................TCTTTTTTTTTTTTTTTTTTTAAGTGTT......................................................................................................................................................................281.000.001.00-----------------
....................................................AAGTTCTTTTTTTTTTTGGGT.................................................................................................................................................................................211.000.00-1.00----------------
......................................................GTTCTTTTTTTTTTTTTTTTTTCGCC..........................................................................................................................................................................261.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTTTACCC.........................................................................................................................................................................281.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTGTC............................................................................................................................................................................251.000.001.00-----------------
.......................................................TTCTTTTTTTTTTTTTTTTTTTAAGTTGC......................................................................................................................................................................291.000.001.00-----------------
.....................................................AGTTCTTTTTTTTTTTTTTTTTCTGG...........................................................................................................................................................................261.000.00-1.00----------------
......GATAAGGAATTGCTCAATGTGACC............................................................................................................................................................................................................................2420.500.50----------------0.50-
.......ATAAGGAATTGCTCAATGTGACCCCAGAGGATT..................................................................................................................................................................................................................3320.500.50-----------------0.50
...............................................................TTTTTTTTTTTTTTAAGTCTGT.....................................................................................................................................................................2240.250.25--0.25---------------

Antisense strand
GGGTACGATAAGGAATTGCTCAATGTGACCCCAGAGGATTGGGATTTCTGGTAAGTTCTTTTTTTTTTTTTTTTTTTAAGTCTGTACATTTCCTGTGGTTCTAATTGTTACTGATAAAACTGTAATGCTTTCTCTTCTAAGAAGATGGAATGTGAAATGTGAGATTGAGTCAAAGGACAAATGCCTTCTATATTAAAAGTTTTGTATTTAATGAATTAAAGTGTTTTCTACTTTAAACAAGTTTAGACTT
......................................................(((((...(((((((........((((...((((.......((((..........)))).......))))..))))........))))))).)))))...................................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................................................................................................AGTGTTTTCTACTTTAAACT........... 201.000.00------------1.00-----
............................................................................................................................................................................................................................GTGTTTTCTACTTTAAACACT......... 211.000.00-------------1.00----
.............................................................................................................................................................................................................ATTTAATGAATTAAATAG........................... 181.000.00----------1.00-------