ID: uc003pvb.2_intron_1_0_chr6_111805349_f.5p
GENE: (2)
chr6:111805299-111805548+


(2)
B-CELL 		(1)
BRAIN 		(12)
BREAST 		(27)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(3)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTTGGTTTCCTCGGCCCCGCAGGCTGCGTCCCGGGCACGCGCAAGTACATGTAAGGACTTGTCAGCTGCCGGTGACCTCCCTCCTCCCTCGTCGCTCCTCCCCCAGCGGAATGTAGGATTAACAGTCTTTCCGAGAAAATTTTGGCCAAAGAAAAAGGCCTGTGAAAGTCACCGCGTTAGACGTGGCCTCCTCGTGTTTTTCACTAACACGTTATGGAAGGTTTTACTACCCGAAGGCATAAAAGCACCA
...............................................................................................................................................(((((......((.((..(((.....))).)).)).....)))))..............................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR038860(GSM458543)
MM426. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................................TGGCCAAAGAAAAAGGCCTG........................................................................................20110.0010.0010.00------------------------------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAAAGT.................................................................................20110.0010.00---2.00-----4.00-1.00--1.00-------------2.00--------------------------------------------------
...........................................................................................................................................................AGGCCTGTGAAAGTCACCGC...........................................................................2019.009.00-2.00---1.002.00---1.00-1.00----------------1.001.00------------------------------------------------
.............................................................................................................................................................................GCGTTAGACGTGGCCTCC...........................................................1819.009.00--5.00-4.00--------------------------------------------------------------------------
....................................................................................................................................................AAGAAAAAGGCCTGTGAA....................................................................................1818.008.00-----1.002.002.00-----2.00-----------------------------------------------------1.00-----------
.................................................................................................................................................................................................GTGTTTTTCACTAACACG.......................................1818.008.004.00--4.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGGTTTTACTACCCGAAGG.............1916.006.006.00------------------------------------------------------------------------------
....................................................................................................................................................AAGAAAAAGGCCTGTGAAAG..................................................................................2016.006.00-3.00-1.00---------------------1.00---------------------1.00-------------------------------
...........................................................................................................................................................AGGCCTGTGAAAGTCACCG............................................................................1915.005.00------1.00------------------------------------1.00--------------1.001.00-----1.00-------------
.......................................................................................................................................................AAAAAGGCCTGTGAAAGT.................................................................................1825.005.00---2.00-0.50--0.50-----------------------0.50----------------------------------------0.500.50-0.50--
.........................................................................................................GCGGAATGTAGGATTAACAGT............................................................................................................................2115.005.00-4.00------------------------------------------------------1.00----------------------
............................................GTACATGTAAGGACTTGT............................................................................................................................................................................................1814.004.003.00--1.00---------------------------------------------------------------------------
....................................................................................................................................................AAGAAAAAGGCCTGTGAAAGT.................................................................................2114.004.00--------1.00--------------------1.00---1.001.00--------------------------------------------
......................................................................................................................................................GAAAAAGGCCTGTGAAAG..................................................................................1813.003.00-------1.00---1.00-----------1.00-------------------------------------------------------
........................................................................................................................................................AAAAGGCCTGTGAAAGTCACCGC...........................................................................2313.003.00--2.00-----------------------1.00----------------------------------------------------
...................................................................................................................................................................GAAAGTCACCGCGTTAGAC....................................................................1913.003.00--3.00----------------------------------------------------------------------------
.......................................................................................................CAGCGGAATGTAGGATTAAC...............................................................................................................................2013.003.00-3.00-----------------------------------------------------------------------------
...........................................................................................................................................................AGGCCTGTGAAAGTCACCGCG..........................................................................2113.003.00--------1.00-----------------1.00---1.00------------------------------------------------
.............................................................................................................................................................GCCTGTGAAAGTCACCGC...........................................................................1813.003.00----1.001.00-----------------------------------------------------------------1.00-------
......................................................................................................CCAGCGGAATGTAGGATTAA................................................................................................................................2013.003.00-2.00----------------------------------1.00------------------------------------------
.....................................................................................................CCCAGCGGAATGTAGGAT...................................................................................................................................1813.003.00--1.00-1.00-1.00------------------------------------------------------------------------
........................................................................................................AGCGGAATGTAGGATTAA................................................................................................................................1813.003.00---2.00-1.00-------------------------------------------------------------------------
.........................................................................................................GCGGAATGTAGGATTAACAG.............................................................................................................................2013.003.00-2.00-----1.00-----------------------------------------------------------------------
..................................................................................................TCCCCCAGCGGAATGTAGGATTAACAGTCTT.........................................................................................................................3112.002.00-----------------2.00-------------------------------------------------------------
.............................................................................................................................................................................GCGTTAGACGTGGCCTCCTCGTGT.....................................................2412.002.00--2.00----------------------------------------------------------------------------
...........................................................................................................................................................AGGCCTGTGAAAGTCACCGCGTTAGAC....................................................................2712.002.00----2.00--------------------------------------------------------------------------
......................................................................................................................................................GAAAAAGGCCTGTGAAAGTCACC.............................................................................2312.002.00--2.00----------------------------------------------------------------------------
......................................................................................................................................................GAAAAAGGCCTGTGAAAGT.................................................................................1912.002.00------------------2.00------------------------------------------------------------
......................................................................................................CCAGCGGAATGTAGGG....................................................................................................................................162.000.00----------------------2.00--------------------------------------------------------
...................................................TAAGGACTTGTCAGCTGC.....................................................................................................................................................................................1812.002.00----1.00---1.00----------------------------------------------------------------------
...........................................................................................TCGCTCCTCCCCCAGCGGAATGTAGGATC..................................................................................................................................292.000.00---------------2.00---------------------------------------------------------------
..................................................................................................................................................CAAAGAAAAAGGCCTGTGAAAG..................................................................................2212.002.00---1.00-----------------------------------------------1.00---------------------------
.......................................................................................................................................................AAAAAGGCCTGTGAAAGTCAC..............................................................................2112.002.00-----1.001.00------------------------------------------------------------------------
........................................................................................................................................................AAAAGGCCTGTGAAAGTC................................................................................1812.002.00-----1.00-----1.00-------------------------------------------------------------------
........................................................................TGACCTCCCTCCTCCCTCG...............................................................................................................................................................1912.002.00----------2.00--------------------------------------------------------------------
...................................................................................................................................................AAAGAAAAAGGCCTGTGAA....................................................................................1912.002.00-----------------------------------------------------1.00-1.00-----------------------
....................................................................................................CCCCAGCGGAATGTAGGATTAACAG.............................................................................................................................2512.002.00------------2.00------------------------------------------------------------------
......................................................................................CCTCGTCGCTCCTCCCCG..................................................................................................................................................181.000.00----------------------------------------------------1.00--------------------------
............................................................................................................................................................................CGCGTTAGACGTGGCCTC............................................................1811.001.00--1.00----------------------------------------------------------------------------
........................................................................................................................................................AAAAGGCCTGTGAAAGTCACCG............................................................................2211.001.00-----1.00-------------------------------------------------------------------------
.....................................................................................................................................AGAAAATTTTGGCCAAAGAAAAAGGC...........................................................................................2611.001.00----1.00--------------------------------------------------------------------------
..........................................................................................................................................ATTTTGGCCAAAGAAAAAGGCCTGTGAAAG..................................................................................3011.001.00--------1.00----------------------------------------------------------------------
......................................................................................................................................................................AGTCACCGCGTTAGACGTGGC...............................................................2111.001.00------------------------------------------------------------------1.00------------
................................................ATGTAAGGACTTGTCAGC........................................................................................................................................................................................1811.001.00----1.00--------------------------------------------------------------------------
.........................................................................................................................................................AAAGGCCTGTGAAAGTCACCGCGTTAGACGT..................................................................3111.001.00-------1.00-----------------------------------------------------------------------
...................................................................................................CCCCCAGCGGAATGTAGGAT...................................................................................................................................2011.001.00-1.00-----------------------------------------------------------------------------
..........................................................................................................................................................AAGGCCTGTGAAAGTCACCG............................................................................2011.001.00----------------------------------------------------------------1.00--------------
.............................................................................................................................................................................................................AACACGTTATGGAAGGTT...........................1811.001.00-----------------------------------------1.00-------------------------------------
....................AGGCTGCGTCCCGGGCACG...................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------1.00----------
.............................................................................................................................................TTGGCCAAAGAAAAAGGCCTGT.......................................................................................2211.001.00-------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................GCGTTAGACGTGGCC..............................................................1511.001.00--1.00----------------------------------------------------------------------------
............................................................................................................................................TTTGGCCAAAGAAAAAGG............................................................................................1811.001.001.00------------------------------------------------------------------------------
................................................................................................................................................GCCAAAGAAAAAGGCCTGTGAA....................................................................................2211.001.00-------------------1.00-----------------------------------------------------------
.............................................TACATGTAAGGACTTGTCAGCTGCCGG..................................................................................................................................................................................2711.001.00-1.00-----------------------------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAAAGTCAC..............................................................................2311.001.00-----------1.00-------------------------------------------------------------------
.....................................................AGGACTTGTCAGCTGCCGG..................................................................................................................................................................................1911.001.00--------1.00----------------------------------------------------------------------
......................................................................................................CCAGCGGAATGTAGGATTAAC...............................................................................................................................2111.001.00---1.00---------------------------------------------------------------------------
..........................................................................................................................................................AAGGCCTGTGAAAGTCACCGCGTTA.......................................................................2511.001.00---------------------------1.00---------------------------------------------------
......TTCCTCGGCCCCGCAGGC..................................................................................................................................................................................................................................1811.001.00----1.00--------------------------------------------------------------------------
.....................................................................................................................................................................AAGTCACCGCGTTAGACG...................................................................1811.001.00----------------------------------------------1.00--------------------------------
...............................................................................................................................................................................................................CACGTTATGGAAGGT............................1521.001.00--1.00----------------------------------------------------------------------------
......................................................................................................................................................GAAAAAGGCCTGTGA.....................................................................................1501.001.00-------1.00-----------------------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAAAGTC................................................................................2111.001.00---1.00---------------------------------------------------------------------------
.................................................................CTGCCGGTGACCTCCCTTGTT....................................................................................................................................................................211.000.00------------------------------------------------1.00------------------------------
......................................................................................................CCAGCGGAATGTAGGAT...................................................................................................................................1711.001.00----1.00--------------------------------------------------------------------------
.........................................................................................................................................................AAAGGCCTGTGAAAGTCACC.............................................................................2011.001.00------------------------------------------------------------1.00------------------
..................................................GTAAGGACTTGTCAGCTGCCGGTGACCT............................................................................................................................................................................2811.001.00-------------------------------------------------1.00-----------------------------
..........................................................................................................................................................................ACCGCGTTAGACGTGGCCTCCTCGTGTTTTT.................................................3111.001.00---------------------------------------------------------------1.00---------------
.....................................................................................................................................................................................................................................CCCGAAGGCATAAAAG.....1611.001.00------------------------------------------------------------------------1.00------
.............................................................................................................................................TTGGCCAAAGAAAAAGGC...........................................................................................1811.001.00-----1.00-------------------------------------------------------------------------
....................AGGCTGCGTCCCGGGCACGC..................................................................................................................................................................................................................2011.001.00------------------------1.00------------------------------------------------------
......................................................................................................CCAGCGGAATGTAGGATTAACAG.............................................................................................................................2311.001.00-1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................ACCCGAAGGCATAAAAGC....1811.001.00---------------------------1.00---------------------------------------------------
...................................................................................................................................................AAAGAAAAAGGCCTGTGAAAG..................................................................................2111.001.00-----1.00-------------------------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAAAGTCA...............................................................................2211.001.00-----------------------1.00-------------------------------------------------------
........................................................................................................AGCGGAATGTAGGATTAACAGT............................................................................................................................2211.001.00-1.00-----------------------------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAA....................................................................................1741.001.000.50-------------0.25-0.25--------------------------------------------------------------
..............................................................................................................................................................................CGTTAGACGTGGCCTCCTCGTGT.....................................................2311.001.00--1.00----------------------------------------------------------------------------
............................................................................................................................................................................CGCGTTAGACGTGGCCTCCTCG........................................................2211.001.00----------1.00--------------------------------------------------------------------
.......................................................................................................................................................................GTCACCGCGTTAGACGTG.................................................................1811.001.00---------------------------------------------1.00---------------------------------
....................................................................................................................................................AAGAAAAAGGCCTGTGAAAGTCACC.............................................................................2511.001.00------------------------1.00------------------------------------------------------
...........CGGCCCCGCAGGCTGCGTCCCGGGCACGCGGA...............................................................................................................................................................................................................321.000.00---------------1.00---------------------------------------------------------------
.......................................................................................................CAGCGGAATGTAGGATTAACAGT............................................................................................................................2311.001.00------------------------------------------1.00------------------------------------
...........................................AGTACATGTAAGGACTTGT............................................................................................................................................................................................1911.001.00---1.00---------------------------------------------------------------------------
.............................................................................................................................................................GCCTGTGAAAGTCACCG............................................................................1711.001.00------1.00------------------------------------------------------------------------
................................................................................................................................................................TGTGAAAGTCACCGCGTTAGA.....................................................................2111.001.00--------------------------------1.00----------------------------------------------
..........................................................................................................................................................AAGGCCTGTGAAAGTCACC.............................................................................1911.001.00------------1.00------------------------------------------------------------------
.............................................................................................................................................TTGGCCAAAGAAAAAGG............................................................................................1711.001.00-------1.00-----------------------------------------------------------------------
..............................................................................................................................................................................................................................TTTACTACCCGAAGGCATAAAAG.....2311.001.00-1.00-----------------------------------------------------------------------------
.......................................................................................................CAGCGGAATGTAGGATTA.................................................................................................................................1811.001.00-----1.00-------------------------------------------------------------------------
....................................................AAGGACTTGTCAGCTGCCGGTGAC..............................................................................................................................................................................2411.001.00---1.00---------------------------------------------------------------------------
....................................................................................................................................................AAGAAAAAGGCCTGTGAAA...................................................................................1911.001.00---------------------------------------------------------1.00---------------------
....................................................AAGGACTTGTCAGCTGC.....................................................................................................................................................................................1711.001.00----1.00--------------------------------------------------------------------------
...............................................CATGTAAGGACTTGTCAGCTGCCGGTGACCT............................................................................................................................................................................3111.001.00-------------------------------1.00-----------------------------------------------
............................................................................................................................................................................CGCGTTAGACGTGGCCTCCTCGT.......................................................2311.001.00-------------1.00-----------------------------------------------------------------
.............................................................................TCCCTCCTCCCTCGTCGCTCCTCCC....................................................................................................................................................2511.001.00--------------------------------------------------1.00----------------------------
..................................................................................................................................................CAAAGAAAAAGGCCTGTGAAAGTCAC..............................................................................2611.001.00-------1.00-----------------------------------------------------------------------
.................................................................................................CTCCCCCAGCGGAATGTAGGATTAACAG.............................................................................................................................2811.001.00-1.00-----------------------------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAAAG..................................................................................1911.001.00----------------1.00--------------------------------------------------------------
....................................................AAGGACTTGTCAGCTGCCGG..................................................................................................................................................................................2011.001.00-1.00-----------------------------------------------------------------------------
................................................................................................................................................GCCAAAGAAAAAGGCCTGTGAAAGT.................................................................................2511.001.00---------------------1.00---------------------------------------------------------
..........................................................................................................................................................AAGGCCTGTGAAAGTCACCGCGTTAGAC....................................................................2811.001.00-------------------------------1.00-----------------------------------------------
...................CAGGCTGCGTCCCGGGCAC....................................................................................................................................................................................................................1911.001.00----------------1.00--------------------------------------------------------------
.........................................................................................................GCGGAATGTAGGATTAACAGTCT..........................................................................................................................2311.001.00--------------------1.00----------------------------------------------------------
.............................................................................................................AATGTAGGATTAACAGTC...........................................................................................................................1811.001.00-------------------------------------1.00-----------------------------------------
..................................................GTAAGGACTTGTCAGCTGCCGG..................................................................................................................................................................................2211.001.00---------------------------------------------------------------------1.00---------
........................................................................................................AGCGGAATGTAGGATTAACAGTC...........................................................................................................................2311.001.00---1.00---------------------------------------------------------------------------
............................................GTACATGTAAGGACTTGTCAGCTGCCGG..................................................................................................................................................................................2811.001.00---1.00---------------------------------------------------------------------------
........................................................ACTTGTCAGCTGCCGGTGACCTCCCTCCTCC...................................................................................................................................................................3111.001.00--------------------------------------------1.00----------------------------------
...........................................................................................................................................................AGGCCTGTGAAAGTCACCGCGTTAGACG...................................................................2811.001.00----1.00--------------------------------------------------------------------------
........................................................................TGACCTCCCTCCTCCCTCGTCGC...........................................................................................................................................................2311.001.00--------------------1.00----------------------------------------------------------
..........................................................................................................................................................................................................ACTAACACGTTATGGAAGGT............................2011.001.00---1.00---------------------------------------------------------------------------
.........................................................................................................................................................AAAGGCCTGTGAAAGTCACCGC...........................................................................2211.001.00-----1.00-------------------------------------------------------------------------
.......................................................................................................................................................AAAAAGGCCTGTGAAAG..................................................................................1730.670.67--------0.33--------------------------------------------------------------------0.33-
..............................................................................................................................................................................................................ACACGTTATGGAAGGT............................1620.500.50--0.50----------------------------------------------------------------------------
.........................................................CTTGTCAGCTGCCGG..................................................................................................................................................................................1520.500.50---------------------------------------------------------------------------0.50---
...................................................................................................................................................AAAGAAAAAGGCCTGTG......................................................................................1720.500.50-------0.50-----------------------------------------------------------------------
..................................................................................................................................................CAAAGAAAAAGGCCTGT.......................................................................................1720.500.50--------------0.50----------------------------------------------------------------
....................................................................................................................................................AAGAAAAAGGCCTGTG......................................................................................1640.250.25------------------------------------------------------------------------------0.25
.........................................................................................................................................................AAAGGCCTGTGAAAGT.................................................................................1670.140.14--0.14----------------------------------------------------------------------------

Antisense strand
GTTGGTTTCCTCGGCCCCGCAGGCTGCGTCCCGGGCACGCGCAAGTACATGTAAGGACTTGTCAGCTGCCGGTGACCTCCCTCCTCCCTCGTCGCTCCTCCCCCAGCGGAATGTAGGATTAACAGTCTTTCCGAGAAAATTTTGGCCAAAGAAAAAGGCCTGTGAAAGTCACCGCGTTAGACGTGGCCTCCTCGTGTTTTTCACTAACACGTTATGGAAGGTTTTACTACCCGAAGGCATAAAAGCACCA
...............................................................................................................................................(((((......((.((..(((.....))).)).)).....)))))..............................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR038860(GSM458543)
MM426. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................................................TTTTCTCGGAAAGACTG............................................................................................................... 1717.007.007.00------------------------------------------------------------------------------
...........................TTGCGCGTGCCCGGGAC.............................................................................................................................................................................................................. 1712.002.00--2.00----------------------------------------------------------------------------
.......................................................................AGGGAGGAGGGAGGTCAC................................................................................................................................................................. 1812.002.00--------------1.00------1.00---------------------------------------------------------
.....................................................................................................................................................AGAAAAAGGCCTGTGAGGG.................................................................................. 191.000.00------------------------------------------------------1.00------------------------
.CGGGGCCGAGGAAACCAA....................................................................................................................................................................................................................................... 1811.001.00-------------------1.00-----------------------------------------------------------
.......................................................ACCGGCAGCTGACAAGTC................................................................................................................................................................................. 1811.001.00-------------------------1.00-----------------------------------------------------
...................................................ACCGGCAGCTGACAAGTCCTTA................................................................................................................................................................................. 2211.001.00--------------------------------------1.00----------------------------------------
...............CCCGGGACGCAGCCTGCGGG....................................................................................................................................................................................................................... 2011.001.00------1.00------------------------------------------------------------------------
................................................................................................................................................................................ACACGAGGAGGCCACGTCTAA..................................................... 2111.001.00-----------------------------------1.00-------------------------------------------
.............................................................................................GCTCCTCCCCCAGCGTTGT.......................................................................................................................................... 191.000.00-------------------------------------------------------------1.00-----------------
....................................................ACCGGCAGCTGACAAGTCCTT................................................................................................................................................................................. 2111.001.00----------------------------------------1.00--------------------------------------
..........GGGACGCAGCCTGCGGGGCCGA.......................................................................................................................................................................................................................... 2211.001.00---------------------------------------1.00---------------------------------------
...........GGGACGCAGCCTGCGGGGCCG.......................................................................................................................................................................................................................... 2111.001.00--------------1.00----------------------------------------------------------------
....................................................................................................................TCTCGGAAAGACTGTTAATC.................................................................................................................. 2011.001.00-1.00-----------------------------------------------------------------------------
................ACATGTACTTGCGCGTGCCCGGGACGCAGCCTGCGG...................................................................................................................................................................................................... 3611.001.00----------------------------------------------------------------------1.00--------
.........................................................................................CGTCGCTCCTCCCCCATAC.............................................................................................................................................. 191.000.00--------------------------------------------------------------1.00----------------