| (3) B-CELL | (1) BRAIN | (1) BREAST | (11) CELL-LINE | (1) CERVIX | (2) HEART | (5) HELA | (3) LIVER | (2) OTHER | (4) SKIN | (1) TESTES | (1) XRN.ip |
| ACACTCTTGTGTATATTTCCTTGATCATTGCTATCATCTTTCTCATTTTTATATGGTATCTGTAGAGAACACAGAACTCTGAATTCTTTGCTTGGGCCTCCTGGGGCTTTTCTGGTAGTGTCATTTCCCTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCCCTAGACATCTCCAGTTACAGCCCGAACACTGGAAACTCTGATTCGACTGGCCAC ................................................................................................(((....)))(((((..((((.((((...((...(((((.....)))))..))..)))))))).)))))..................................................................................... ................................................................................................97...................................................................166.................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033712(GSM497057) Burkitt Lymphoma (BL510). (B cell) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330910(SRX091748) tissue: normal skindisease state: normal. (skin) | SRR040036(GSM532921) G243N. (cervix) | SRR189782 | GSM450603(GSM450603) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR553576(SRX182782) source: Testis. (testes) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | TAX577453(Rovira) total RNA. (breast) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330897(SRX091735) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330862(SRX091700) tissue: skin psoriatic involveddisease state:. (skin) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................TTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCCCT.................................................... | 69 | 1 | 11.00 | 11.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................CCCTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCC...................................................... | 70 | 1 | 11.00 | 11.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TCCCTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTT........................................................ | 69 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTC....................................................... | 62 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................CCTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCCCTAG.................................................. | 73 | 1 | 6.00 | 6.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................CTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCC...................................................... | 68 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................AAACTCTGATTCGACTGGC... | 19 | 1 | 4.00 | 4.00 | - | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................GGGCCTCCTGGGGCTTTTCTGGTAGTGTCAT.............................................................................................................................. | 31 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................CCTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCCC..................................................... | 70 | 1 | 4.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................GAAACTCTGATTCGACTGGC... | 20 | 1 | 3.00 | 3.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAGGATTGATGGGCATGCCTAA........................................................................................ | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TGATCATTGCTATCATTT................................................................................................................................................................................................................... | 18 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................GGAAACTCTGATTCGACTGGC... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................ATCTTTCTCATTTTTATATGGTATCTGTAG......................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................GAAACTCTGATTCGACTGGCA.. | 21 | 1 | 1.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................AAACTCTGATTCGACTGGCC.. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................TTTTCTGGTAGTGTCG............................................................................................................................... | 16 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................CAGTTACAGCCCGAAC........................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................CACTGGAAACTCTGATTCGACTG..... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................ACTGGAAACTCTGATTCGACTGGCC.. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TCATTGCTATCATCTTTT................................................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................TGGAAACTCTGATTCGACTGGC... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................TGGAAACTCTGATTCGAC....... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCCCT.................................................... | 68 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................CAGCCCGAACACTGGAAACT................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CCCGAACACTGGAAACTC................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................AGGATTGATGGGCATGCCTA......................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................TGGGGCTTTTCTGGTTTTA.................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................TGGGGCTTTTCTGGTAGGA.................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................AGCCCGAACACTGGAAACTCTGATTCGACTGGCCC. | 35 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................AACACTGGAAACTCTG.............. | 16 | 6 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | 0.17 | 0.17 | - |
| .....................................CTTTCTCATTTTTATATG................................................................................................................................................................................................... | 18 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - |
| ...............................................................AGAGAACACAGAACTCTG......................................................................................................................................................................... | 18 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................GAACACTGGAAACTCTG.............. | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - |
| .......................................................GTATCTGTAGAGAAC.................................................................................................................................................................................... | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| ACACTCTTGTGTATATTTCCTTGATCATTGCTATCATCTTTCTCATTTTTATATGGTATCTGTAGAGAACACAGAACTCTGAATTCTTTGCTTGGGCCTCCTGGGGCTTTTCTGGTAGTGTCATTTCCCTTTCTGTGCAGTAGGATTGATGGGCATGCCTAAAAGACTTGGGATAAGCAATCCTCCCTTTTCTTCCCTAGACATCTCCAGTTACAGCCCGAACACTGGAAACTCTGATTCGACTGGCCAC ................................................................................................(((....)))(((((..((((.((((...((...(((((.....)))))..))..)))))))).)))))..................................................................................... ................................................................................................97...................................................................166.................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033712(GSM497057) Burkitt Lymphoma (BL510). (B cell) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330910(SRX091748) tissue: normal skindisease state: normal. (skin) | SRR040036(GSM532921) G243N. (cervix) | SRR189782 | GSM450603(GSM450603) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR553576(SRX182782) source: Testis. (testes) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | TAX577453(Rovira) total RNA. (breast) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330897(SRX091735) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330862(SRX091700) tissue: skin psoriatic involveddisease state:. (skin) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................ATCTCCAGTTACAGCC................................ | 16 | 13.00 | 0.00 | - | 13.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................CTCTGATTCGACTGGCAGG | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................TTGCTATCATCTTTCTCAAGTG......................................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................AGAACACAGAACTCTTTGA...................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............ATATTTCCTTGATCATGCTT.......................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................ACAGAACTCTGAATTTCAG................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................GCCCATCAATCCTACT................................................................................................ | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - |