ID: uc003ops.2_intron_0_0_chr6_41068918_f.5p
GENE: (1)
chr6:41068868-41069117+


(3)
B-CELL 		(6)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(4)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
ACCCGAGCTCGCCACGGCCCAGGGCGTCCTCCTAGGCGTCCATGTGACGGGTGAGGGCGACGGCCGGCACTTGCACTTAAGTCTCCTGGCCTGCGGGAGAGGCGGCCGTTGGGTCTAAGCCCCTGGAGGCCTCGACGGTTACAGGCCTAGCCTCCCGCGAGCTAAGGCACAGTTTAACTTCGTGCTGCGGCTTCCTTAGGAAACTTTGAGTATCTTCGTTTTAGCGTGGGAGGACATCTTTTGGGATGAA
..............................................................................................................................................((((...)))).((..(((((..(((((((.....))..)))))..))))).....))..................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTAGG..................................................2514.004.00----------1.00---------2.00---------------1.00----------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTA....................................................2314.004.00----------------------2.00--------------------1.001.00--
.............................................................................................................................................................................................GCTTCCTTAGGAAACTTTGA.........................................2014.004.00-----4.00-----------------------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTAG...................................................2414.004.00------------2.00------2.00---------------------------
..........................................................................ACTTAAGTCTCCTGGCCTGCGGGAGAGGCGGCCGTTGGGTCTAAGCCCCTGGAGGCC.......................................................................................................................5714.004.00---4.00-------------------------------------------
...................................................................................................................................................................................................................ATCTTCGTTTTAGCGTGGGAGG.................2213.003.00-3.00---------------------------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTT.....................................................2212.002.00--1.00------------------1.00-------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTAGGA.................................................2612.002.00----1.00------------------------------1.00-----------
................................................................................................................................................................................ACTTCGTGCTGCGGCTTCCTTAGG..................................................2412.002.00------1.00--------------1.00-------------------------
.................................................................................................................................................CCTAGCCTCCCGCGAGCTAAGG...................................................................................2212.002.00-1.00------------1.00--------------------------------
...........................................................................................................................................................................................................CTTTGAGTATCTTCGTTTTAGCGTGGG....................2712.002.00------1.001.00---------------------------------------
........................................................................................................................CCCTGGAGGCCTCGACGGT...............................................................................................................1912.002.00----------1.00---1.00--------------------------------
..............................................................................................................................................................................TAACTTCGTGCTGCGGCTTCCTTAGGA.................................................2712.002.00-2.00---------------------------------------------
............................................TGACGGGTGAGGGCGACGGCCGGCACCTGC................................................................................................................................................................................302.000.001.00--------1.00-------------------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCT......................................................2112.002.00--1.00-1.00------------------------------------------
............CACGGCCCAGGGCGTCCTCCTAGGCGTCCATGTGACGGGTGAGGGCGACGGCCGGC......................................................................................................................................................................................5612.002.00-------2.00---------------------------------------
............................................................................................................................................................................................................................TTAGCGTGGGAGGACATCTTTTGGGA....2611.001.00---------1.00-------------------------------------
......................................................................................................................................................................................TGCTGCGGCTTCCTTAGGAAAATC............................................241.000.001.00----------------------------------------------
......................................................................................................................................ACGGTTACAGGCCTAGCCTCCCGCGAGCCA......................................................................................301.000.001.00----------------------------------------------
.........................................................................................................................................................................CAGTTTAACTTCGTGCTGCGG............................................................2111.001.00--1.00--------------------------------------------
...............................................................................................................................GGCCTCGACGGTTACAGGT........................................................................................................191.000.00-1.00---------------------------------------------
.........................................................................................................................................................................................................................................ACATCTTTTGGGATGAACCTG211.000.00--------------------------------1.00--------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTAGT..................................................2511.004.00----1.00------------------------------------------
...........................................................................................................................................................................................................................TTTAGCGTGGGAGGACATCTTTTGGGATG..2911.001.001.00----------------------------------------------
................................................................................GTCTCCTGGCCTGCGGGTTTC.....................................................................................................................................................211.000.00-------------------------------1.00---------------
..............................................ACGGGTGAGGGCGACGGCCGG.......................................................................................................................................................................................2111.001.00--------------------------------------1.00--------
................................................................................................................................................................................ACTTCGTGCTGCGGCTTC........................................................1811.001.00-1.00---------------------------------------------
.......................................................................................................................CCCCTGGAGGCCTCGACGGTT..............................................................................................................2111.001.00-------1.00---------------------------------------
..............................................ACGGGTGAGGGCGACGGCCGGCA.....................................................................................................................................................................................2311.001.00------1.00----------------------------------------
.......................................................................................................................................................................CACAGTTTAACTTCGTGCTGCGGCTT.........................................................2611.001.00---------------1.00-------------------------------
...................................................TGAGGGCGACGGCCGGCACTCG.................................................................................................................................................................................221.000.00-------------1.00---------------------------------
.................................................................................................................................................................................................................GTATCTTCGTTTTAGCGTG......................1911.001.00--------------------------1.00--------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTT.........................................................1811.001.00----------------1.00------------------------------
.........................................................................................CCTGCGGGAGAGGCGGC................................................................................................................................................1711.001.00-----------1.00-----------------------------------
.....................................................AGGGCGACGGCCGGCACTTGCACTCA...........................................................................................................................................................................261.000.00---------------------------------------1.00-------
..............................................ACGGGTGAGGGCGACGGCCGGCACCTGC................................................................................................................................................................................281.000.001.00----------------------------------------------
..........................................................................................................................................................................AGTTTAACTTCGTGCTGCGGCTTCCTTTGGA.................................................311.000.00----------1.00------------------------------------
....................................................GAGGGCGACGGCCGGCACT...................................................................................................................................................................................1911.001.00-----------------1.00-----------------------------
.....................................................................CTTGCACTTAAGTCTCCTGG.................................................................................................................................................................2011.001.00----------------------------------------1.00------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTAGGATT...............................................2811.002.00----1.00------------------------------------------
.................................................................................................................................................................................CTTCGTGCTGCGGCTTCTTT.....................................................201.000.00--1.00--------------------------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTTT...................................................2411.002.00------------------1.00----------------------------
.......................................................................................................................CCCCTGGAGGCCTCGACGGTTACAGG.........................................................................................................2611.001.00---------------1.00-------------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTC........................................................1911.001.00----------------1.00------------------------------
........................................CATGTGACGGGTGAGGGCGACG............................................................................................................................................................................................2211.001.00------------------------1.00----------------------
...........................................................................................................................................................................................................CTTTGAGTATCTTCGTTTTAGCGTGG.....................2611.001.00-1.00---------------------------------------------
................................................................................................................................................................................ACTTCGTGCTGCGGCTTCCTAGGA..................................................241.000.001.00----------------------------------------------
..........................................................................ACTTAAGTCTCCTGGCCTGCGGGAGAGGCGGCCGTTGGGTCTAAGCCCCTGGAGGCA.......................................................................................................................571.000.00---1.00-------------------------------------------
.........................................................................................................................................................................................................AACTTTGAGTATCTTCGTTTTAGCGTGGGAGG.................3211.001.00---------------------------------------------1.00-
...................................................TGAGGGCGACGGCCGGCACCCG.................................................................................................................................................................................221.000.001.00----------------------------------------------
..............................................ACGGGTGAGGGCGACGGCCGGCTT....................................................................................................................................................................................241.000.00--------1.00--------------------------------------
...........................................................................................................................................................................................................CTTTGAGTATCTTCGTTTTAGCG........................2311.001.00-------------------------------------1.00---------
.....................................................................................................................AGCCCCTGGAGGCCTCGACGGT...............................................................................................................2211.001.00-------------------------1.00---------------------
...........................................................................................................................................TACAGGCCTAGCCTCCCGCGAGC........................................................................................2311.001.00------------------------------1.00----------------
.......................................................................................................................CCCCTGGAGGCCTCGACGGT...............................................................................................................2011.001.00-----------------------1.00-----------------------
.........................................................................CACTTAAGTCTCCTGGCCTGCGGG.........................................................................................................................................................2411.001.00------1.00----------------------------------------
..............................................ACGGGTGAGGGCGACGGCCGGCACTTGCA...............................................................................................................................................................................2911.001.001.00----------------------------------------------
..............................................................................................................................................................................TAACTTCGTGCTGCGGCTTC........................................................2011.001.00--1.00--------------------------------------------
...............................................................................................................................................................................................................................GCGTGGGAGGACATCTGATG.......201.000.00-------------1.00---------------------------------
...............................................................................................................................................................................AACTTCGTGCTGCGGCTTCCTTT....................................................2311.002.00----------------------------------1.00------------
.................................................................................................................................................................................CTTCGTGCTGCGGCTTCCTTA....................................................2111.001.00--1.00--------------------------------------------
.................................................................................................................................CCTCGACGGTTACAGGCCTAG....................................................................................................2111.001.00------------------1.00----------------------------
.....................................................AGGGCGACGGCCGGCACTTGCACC.............................................................................................................................................................................241.000.001.00----------------------------------------------
..................................................................................CTCCTGGCCTGCGGGAGAGGCGGCCGTTGGGTCTAAGCCCCTGGAGGCCTCGACGGTTAC............................................................................................................6011.001.00---1.00-------------------------------------------
..............................................ACGGGTGAGGGCGACGGCCGGCACTCGC................................................................................................................................................................................281.000.00---------1.00-------------------------------------
.......................................................................................................................CCCCTGGAGGCCTCGACGGTTAC............................................................................................................2311.001.00--------1.00--------------------------------------
.................................................................................................................................................................................................................GTATCTTCGTTTTAGCGTGGGAG..................2311.001.00--------1.00--------------------------------------
.....................................GTCCATGTGACGGGTGAGGGCGAC.............................................................................................................................................................................................2411.001.00----------------------------1.00------------------
.....................................................................................................................AGCCCCTGGAGGCCTCGACGGTTA.............................................................................................................2411.001.00----1.00------------------------------------------
.....................................................AGGGCGACGGCCGGC......................................................................................................................................................................................1511.001.00-----------------------------1.00-----------------
.........................................................................................................................................................................................................AACTTTGAGTATCTTCGTTTTAGCGTGGG....................2911.001.00-----------------1.00-----------------------------
................................................GGGTGAGGGCGACGGCCG........................................................................................................................................................................................1811.001.00-----------1.00-----------------------------------
....................................................................................CCTGGCCTGCGGGAGAGGCG..................................................................................................................................................2011.001.00---------------------------------1.00-------------
...........CCACGGCCCAGGGCG................................................................................................................................................................................................................................1560.330.33----------------------------------------------0.33

Antisense strand
ACCCGAGCTCGCCACGGCCCAGGGCGTCCTCCTAGGCGTCCATGTGACGGGTGAGGGCGACGGCCGGCACTTGCACTTAAGTCTCCTGGCCTGCGGGAGAGGCGGCCGTTGGGTCTAAGCCCCTGGAGGCCTCGACGGTTACAGGCCTAGCCTCCCGCGAGCTAAGGCACAGTTTAACTTCGTGCTGCGGCTTCCTTAGGAAACTTTGAGTATCTTCGTTTTAGCGTGGGAGGACATCTTTTGGGATGAA
..............................................................................................................................................((((...)))).((..(((((..(((((((.....))..)))))..))))).....))..................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................ACGGGTGAGGGCGACGG........................................................................................................................................................................................... 171.000.00-----------------------------------------1.00-----
.................................................................................................................................................CCTAGCCTCCCGCGAGT........................................................................................ 171.000.00------------------------------------------1.00----
..................CCAGGGCGTCCTCCTAAGTT.................................................................................................................................................................................................................... 201.000.00---------------------------1.00-------------------