ID: uc003oej.1_intron_4_0_chr6_33385473_r
GENE: CUTA(1)
chr6:33385423-33385785-


(4)
AGO2.ip 		(5)
B-CELL 		(6)
BRAIN 		(11)
BREAST 		(29)
CELL-LINE 		(9)
CERVIX 		(6)
HEART 		(4)
HELA 		(8)
LIVER 		(3)
OTHER 		(18)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TAGGCCGCATGAGTGGGGGGCGGGCTCCCGCGGTCCTGCTCGGCGGAGTGGTGAGTGACCGGCCCCGCCCCGCCCCTTCCGGTCCTCGAAGCCTCGACCGCTACCCGCACCCTAAATCCCAGAGGTTGGCCCCCTGAGGTGTGAGTGAAATGAGCTTTTGCTTTATTTTCCAAGTTTCTCTCTCACCTTCAGGGGCATTCTTCGGGGGTGCATCAGAGGGAGGGCAGAGCCTGAGGATCTAAGCGAAGGCTTCCCCGGGTGTAATTTCCTGGGCTGTTTGTGAGGAGAGATCGAATTCGCCTCCTGCTCTCAGGCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGC
..................................................................................................................................(((((((((((.(((.(((((((((....))))..........))))).))).))))).))))))..((((((.....((((.(((.((((((.....(((((.(((....(((....)))))).)))))....))))))...)))..)))).))))))..........................................................................
.................................................................................................................................130................................................................................................................................................................293....................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM532874(GSM532874)
G699T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
...............GGGGGCGGGCTCCCGCGGG.........................................................................................................................................................................................................................................................................................................................................19118.001.00-3.009.002.00----------------1.00---1.00-------------------------1.00---------------------------------1.00--------------------
...............GGGGGCGGGCTCCCGCGGGG........................................................................................................................................................................................................................................................................................................................................2017.001.00-1.00-6.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................TGAGGTGTGAGTGAAATGAGC................................................................................................................................................................................................................2117.007.00----4.00---------1.00-------------------------------------------------1.00-1.00--------------------------------------
......................................................................................................................................TGAGGTGTGAGTGAAATGAGCT...............................................................................................................................................................................................................2216.006.00----6.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................CTGAGGTGTGAGTGAAATGAGC................................................................................................................................................................................................................2214.004.00-----2.00-----------------1.00-----1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................TTTGGATGCCGGCGCTGCTG........2013.003.00----------------------2.00----------------------------------------------------------------1.00-----------------
...............................................................................................................CTAAATCCCAGAGGTTGG..........................................................................................................................................................................................................................................1812.002.00--------------------------------------------------------------------1.00----------1.00-------------------------
......................................................................................................................................................................................................................................................................................................................................TGTCTTTTGTTTGGATGCCGGCGCT............2512.002.00-------1.00-------1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................TCTCTGCTCCTGTCTTT..............................1712.002.00---------------------------------------------------1.00---1.00-------------------------------------------------
...............GGGGGCGGGCTCCCGCGGC.........................................................................................................................................................................................................................................................................................................................................1912.001.00-1.00-1.00-----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................CTGTCTTTTGTTTGGATGCCGG................2212.002.00-----1.00---------------1.00-----------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCGGGT........................................................................................................................................................................................................................................................................................................................................2012.001.00-1.001.00------------------------------------------------------------------------------------------------------
..............GGGGGGCGGGCTCCCGCGGG.........................................................................................................................................................................................................................................................................................................................................202.000.00--------------------1.00-------------------------------1.00----------------------------------------------------
............................................................................................................................................................................................................................................................................CTGGGCTGTTTGTGAGGAGAG..........................................................................2112.002.00-----------2.00---------------------------------------------------------------------------------------------
............................................................................................................ACCCTAAATCCCAGAGGTTGGCCCCCTGAGGTGTGA...........................................................................................................................................................................................................................3612.002.00-------------1.00-----1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................GTTTGGATGCCGGCGCTGCTGC.......2212.002.00------------2.00--------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................TTTCCTGGGCTGTTTGTGAG...............................................................................2012.002.00---------2.00-----------------------------------------------------------------------------------------------
..............................................................................CCGGTCCTCGAAGCCTCGACCGCTACCCGCA..............................................................................................................................................................................................................................................................3112.002.00-------------1.00-----1.00-------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGGGGG.........................................................................................................................................................................................................................................................................................................................................192.000.00-2.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................TCTTTTGTTTGGATGCCGGCGCT............2312.002.00---------2.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGC3312.002.00-----1.00--------------------1.00------------------------------------------------------------------------------
..........................................................................CCTTCCGGTCCTCGAAGC...............................................................................................................................................................................................................................................................................1812.002.00-------------------------2.00-------------------------------------------------------------------------------
................GGGGCGGGCTCCCGCCCCG........................................................................................................................................................................................................................................................................................................................................192.000.00---------------------------2.00-----------------------------------------------------------------------------
.................................................................................................................AAATCCCAGAGGTTGGCCCCCTGAGGTGTGAGTGAA......................................................................................................................................................................................................................3612.002.00-------------1.00-----1.00-------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................TTTGGATGCCGGCGCTGCT.........1912.002.00-----------1.00--------------------------------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................AGAGATCGAATTCGCC..............................................................1611.001.00-----------------------------------------------------------------------------------1.00---------------------
................................................................................................................................................................................TCTCTCTCACCTTCAGGGGCATC....................................................................................................................................................................231.000.00--------------------------------------------------------------------------1.00------------------------------
.............................................................................................................................................................................................................................................................................TGGGCTGTTTGTGAGGAGA...........................................................................1911.001.00--------------------------------------------------------1.00------------------------------------------------
..............GGGGGGCGGGCTCCCGCG...........................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------1.00-------------------------------------
................GGGGCGGGCTCCCGCGCGCC.......................................................................................................................................................................................................................................................................................................................................2021.000.50--1.00------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................GTTTGGATGCCGGCGCTGCTT........211.000.00----------------------------------------------------------------------------------1.00----------------------
......................................................................................................................................TGAGGTGTGAGTGAAATGAGCA...............................................................................................................................................................................................................2211.007.00--------------------------1.00------------------------------------------------------------------------------
....................................................................................................................................CCTGAGGTGTGAGTGAAATGAGC................................................................................................................................................................................................................2311.001.00------------------------------------------------------1.00--------------------------------------------------
.....................................................................................................................................CTGAGGTGTGAGTGAAA.....................................................................................................................................................................................................................1711.001.00-----------------------------------------------------1.00---------------------------------------------------
...............GGGGGCGGGCTCCCGCCGGG........................................................................................................................................................................................................................................................................................................................................2021.000.50---1.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................CCCCTGAGGTGTGAGTGAAATGAGCTT..............................................................................................................................................................................................................2711.001.00--------------1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................GTCTTTTGTTTGGATGCCGGCGCTGCT.........2711.001.00-----------------------------------------1.00---------------------------------------------------------------
.........................................................................................................................GAGGTTGGCCCCCTGAGG................................................................................................................................................................................................................................1811.001.00------------1.00--------------------------------------------------------------------------------------------
..........GAGTGGGGGGCGGGCCGCG..............................................................................................................................................................................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................TGTAATTTCCTGGGCTGTTTGTGAG...............................................................................2511.001.00-----------------1.00---------------------------------------------------------------------------------------
......................................................................................................................................TGAGGTGTGAGTGAAATGAGA................................................................................................................................................................................................................211.000.00-----1.00---------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCGAC.........................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................TTGTTTGGATGCCGGCGCTGC..........2111.001.00------------1.00--------------------------------------------------------------------------------------------
..........................CCCGCGGTCCTGCTCGGCGG.............................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................CTGGGCTGTTTGTGAGGAGAGAT........................................................................2311.001.00-----1.00---------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................CTGGGCTGTTTGTGAGGAGAGATC.......................................................................2411.001.00---------------------------------1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TTTTGTTTGGATGCCGGCGC.............2011.001.00------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................GTCTTTTGTTTGGATGCCGGCGCTG...........2511.001.00----------------------------------------------------------------------------------------1.00----------------
..................................................................................................................................................................................TCTCTCACCTTCAGGGGCATTCT..................................................................................................................................................................2311.001.00------------------------------1.00--------------------------------------------------------------------------
......................................................................................CGAAGCCTCGACCGCTACCCGCAC.............................................................................................................................................................................................................................................................2411.001.00------1.00--------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCGGGGC.......................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TTTTGTTTGGATGCCGGCGCTG...........2211.001.00------------------------------------------------------------------------------1.00--------------------------
...............................................................................................................................GGCCCCCTGAGGTGTGAGTGAAATGAGCTTT.............................................................................................................................................................................................................3111.001.00-----------------------------------------------------------------------------1.00---------------------------
................GGGGCGGGCTCCCGCGGT.........................................................................................................................................................................................................................................................................................................................................1811.001.00--1.00------------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCGGGC........................................................................................................................................................................................................................................................................................................................................2011.001.00-1.00-------------------------------------------------------------------------------------------------------
........................................................................................................................AGAGGTTGGCCCCCTGAG.................................................................................................................................................................................................................................1811.001.00----------------------------------1.00----------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGGCTGTTTGTGAGGAGAGAT........................................................................2211.001.00----------------------------1.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................CTAAGCGAAGGCTTCCC............................................................................................................1711.001.00-----------------------------1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CCTCTCTGCTCCTGTCTTT..............................1911.001.00---------------------------------------1.00-----------------------------------------------------------------
...............................................................CCCGCCCCGCCCCTTCGCGG........................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------------------------------1.00----------------------------
................................................................................................................................................................................................................................................................................................................................................TTGGATGCCGGCGCTGCTGCCTGTGG.2611.001.00--------------------------------------------------------------------------------1.00------------------------
.......................................................................................................................................................................................................................................................................................................................................GTCTTTTGTTTGGATGCCGGCGC.............2311.001.00------1.00--------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCGGAG........................................................................................................................................................................................................................................................................................................................................2011.001.00---1.00-----------------------------------------------------------------------------------------------------
..................GGCGGGCTCCCGCGGTGCGG.....................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------------------1.00------------
..........................................................................................................................................................................................................................................................................................AGGAGAGATCGAATTCGC...............................................................1811.001.00------------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGGCTGTTTGTGAGGAGAG..........................................................................2011.001.00-------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTGTTTGGATGCCGGCGC.............1911.001.00------------------------------------------------------------1.00--------------------------------------------
..............GGGGGGCGGGCTCCCGCCCCC........................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................TTCTCTCTCACCTTCAGGGGCAT.....................................................................................................................................................................2311.001.00----------------------------------------------------------1.00----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................TGGATGCCGGCGCTGCTGCCCG....221.000.00-------------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTGTTTGGATGCCGGCG..............1811.001.00-------1.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TCAGAGGGAGGGCAGAGC.....................................................................................................................................1811.001.00---------------------------------------------------------------1.00-----------------------------------------
............................................................................................................................................................................................................................................................................CTGGGCTGTTTGTGAGGA.............................................................................1811.001.00----------------------------------1.00----------------------------------------------------------------------
..........................................GCGGAGTGGTGAGTGACCGGC............................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TTCCTGGGCTGTTTGTGAGGAGAGA.........................................................................2511.001.00---------------------------------------------1.00-----------------------------------------------------------
............................................................................................................................................................................AGTTTCTCTCTCACCTTCAGGGGCATT....................................................................................................................................................................2711.001.00------1.00--------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGGTTG.........................................................................................................................................................................................................................................................................................................................................191.000.00-1.00-------------------------------------------------------------------------------------------------------
......................................................................................................ACCCGCACCCTAAATCCCAGAGGTTG...........................................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------1.00-----------------------------------
...............GGGGGCGGGCTCCCGCTGG.........................................................................................................................................................................................................................................................................................................................................1921.000.50-1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................TCCTGGGCTGTTTGTGAGGAGAGATC.......................................................................2611.001.00-----------------1.00---------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCG...........................................................................................................................................................................................................................................................................................................................................1711.001.00--1.00------------------------------------------------------------------------------------------------------
....................................................................................CTCGAAGCCTCGACCGCTACCCGCAC.............................................................................................................................................................................................................................................................2611.001.00---------------------------------------------------------1.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTGTTTGGATGCCGGCGCTGCTGCC......2611.001.00-----------------1.00---------------------------------------------------------------------------------------
.......................................................................................................................................GAGGTGTGAGTGAAATGAG.................................................................................................................................................................................................................1911.001.00------------------------------1.00--------------------------------------------------------------------------
......................................................................................................................................................................................................................AGAGGGAGGGCAGAGCCTGAGGA..............................................................................................................................2311.001.00------------------------------------------------1.00--------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................TGTCTTTTGTTTGGATGCCGGCGCTGCT.........2811.001.00--------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................TTTCTCTCTCACCTTCAGGAATC......................................................................................................................................................................231.000.00-------------------------------1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................................TCAGAGGGAGGGCAGAGCCTGAGGACCT...........................................................................................................................281.000.00--------------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................TCACCTTCAGGGGCATGGTG.................................................................................................................................................................201.000.00--------------------------------1.00------------------------------------------------------------------------
.................GGGCGGGCTCCCGCGGT.........................................................................................................................................................................................................................................................................................................................................1711.001.00--1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................TGAGGTGTGAGTGAAATGAGT................................................................................................................................................................................................................211.000.00-----------------------------------------------------------1.00---------------------------------------------
..............GGGGGGCGGGCTCCCGAGG..........................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------1.00------------------
......................................................................................................................................................................................................................................................................................................................................TGTCTTTTGTTTGGATGCCGGCGC.............2411.001.00------1.00--------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TTTCTCTCTCACCTTCAGGGGCATTCTTCG...............................................................................................................................................................3011.001.00----------1.00----------------------------------------------------------------------------------------------
..............GGGGGGCGGGCTCCCGC............................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------------1.00------------------------------------------------------------
................GGGGCGGGCTCCCGCAGG.........................................................................................................................................................................................................................................................................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------------------
................GGGGCGGGCTCCCGCGCAG........................................................................................................................................................................................................................................................................................................................................1921.000.50-1.00-------------------------------------------------------------------------------------------------------
...............................................................................................GACCGCTACCCGCACCCT..........................................................................................................................................................................................................................................................1811.001.00-------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................TGTTTGGATGCCGGCGCTGCTGC.......2311.001.00-----------1.00---------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................TTGTTTGGATGCCGGCTCTG...........201.000.00-----1.00---------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCGGT.........................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------1.00---------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TTTTGTTTGGATGCCGGCGCT............2111.001.00-------------------------------------------------------------------------------------1.00-------------------
...............GGGGGCGGGCTCCCGCGG..........................................................................................................................................................................................................................................................................................................................................1811.001.00---1.00-----------------------------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGCCGC.........................................................................................................................................................................................................................................................................................................................................1921.000.50---1.00-----------------------------------------------------------------------------------------------------
........................................................................................................................AGAGGTTGGCCCCCTGCG.................................................................................................................................................................................................................................181.000.00--------------------1.00------------------------------------------------------------------------------------
................GGGGCGGGCTCCCGCCCCC........................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------1.00----------------------------------------------------------------
..................................................................................................................................................................................................................................GAGCCTGAGGATCTAAGCGA.....................................................................................................................2011.001.00-----------------------1.00---------------------------------------------------------------------------------
..............................................................................................................................................................................TTTCTCTCTCACCTTCAGGGGC.......................................................................................................................................................................2211.001.00-------------------------------------------1.00-------------------------------------------------------------
...............GGGGGCGGGCTCCCGCCTG.........................................................................................................................................................................................................................................................................................................................................1921.000.50-1.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................AGAGGGAGGGCAGAGCCTGAGG...............................................................................................................................2211.001.00----------------------------------------------------------------------1.00----------------------------------
...............GGGGGCGGGCTCCCGCGTG.........................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................TCTTTTGTTTGGATGCCGGCG..............2111.001.00-------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TTTCTCTCTCACCTTCAGGGG........................................................................................................................................................................2111.001.00------------------------------------------------------------------------1.00--------------------------------
...........................................................................................................................................................................................................................................................................................................................................................CGCTGCTGCCTGTGGC1630.670.67---------------------0.67-----------------------------------------------------------------------------------
...............GGGGGCGGGCTCCCGC............................................................................................................................................................................................................................................................................................................................................1620.500.50----------------------------------------------------------------------------------------------0.50----------
...................................................................................................................................................................................................................................................................................................................................................GATGCCGGCGCTGCT.........1520.500.50-----------------------------------------0.50---------------------------------------------------------------
................GGGGCGGGCTCCCGCG...........................................................................................................................................................................................................................................................................................................................................1620.500.50------------------------------------------------------------------------------------------------0.50--------
.........................................................................................................................................................................................................................................................................................GAGGAGAGATCGAAT...................................................................1520.500.50-----------------------------------------------------------------------------------------------0.50---------
................................................................................................................................................................................................................................................................................................................................TGCTCCTGTCTTTTGTTTGG.......................2020.500.500.50--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTGTTTGGATGCCGG................1620.500.50-------------------------------------------------------------------------------------------------0.50-------
..................GGCGGGCTCCCGCGG..........................................................................................................................................................................................................................................................................................................................................1550.200.20------------------------------------------------------------------------------------------------------0.20--
...................................................................................................................................................................................................................................................................................GTTTGTGAGGAGAGAT........................................................................1650.200.20-------------------------------------------0.20-------------------------------------------------------------
...........................................................................................................................................TGTGAGTGAAATGAGC................................................................................................................................................................................................................1670.140.14----0.14----------------------------------------------------------------------------------------------------

Antisense strand
TAGGCCGCATGAGTGGGGGGCGGGCTCCCGCGGTCCTGCTCGGCGGAGTGGTGAGTGACCGGCCCCGCCCCGCCCCTTCCGGTCCTCGAAGCCTCGACCGCTACCCGCACCCTAAATCCCAGAGGTTGGCCCCCTGAGGTGTGAGTGAAATGAGCTTTTGCTTTATTTTCCAAGTTTCTCTCTCACCTTCAGGGGCATTCTTCGGGGGTGCATCAGAGGGAGGGCAGAGCCTGAGGATCTAAGCGAAGGCTTCCCCGGGTGTAATTTCCTGGGCTGTTTGTGAGGAGAGATCGAATTCGCCTCCTGCTCTCAGGCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGC
..................................................................................................................................(((((((((((.(((.(((((((((....))))..........))))).))).))))).))))))..((((((.....((((.(((.((((((.....(((((.(((....(((....)))))).)))))....))))))...)))..)))).))))))..........................................................................
.................................................................................................................................130................................................................................................................................................................293....................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM532874(GSM532874)
G699T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................CCGCCCCGCCCCTTCCAGG........................................................................................................................................................................................................................................................................................ 1929.000.0025.00----1.00-1.00---------------------------------------------------------------1.00------------------1.00--------------
................................................................CCGCCCCGCCCCTTCCAG......................................................................................................................................................................................................................................................................................... 1823.000.0018.00-----3.00----------------------------------------1.00---------------------------------------------1.00-----------
................................................................CCGCCCCGCCCCTTCCA.......................................................................................................................................................................................................................................................................................... 1716.000.006.00----1.00---------2.00--1.00--------------1.00--1.00-2.00-1.00--------------------1.00-------------------------------------------
.....................................................................................TCGAAGCCTCGACCGTC..................................................................................................................................................................................................................................................................... 173.000.00----------------3.00----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GGGAGGGCAGAGCCTGACCG.............................................................................................................................. 202.000.00--------1.00-1.00----------------------------------------------------------------------------------------------
................................................................CCGCCCCGCCCCTTCCT.......................................................................................................................................................................................................................................................................................... 171.000.00------------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................CAAACAAAAGACAGGAGCAGAGAGGCC........................ 2711.001.00-----------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................AGGCCTGAGAGCAGGAGGCGAATTCG.............................................. 2611.001.00----------------------------------------------1.00----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................GCAGAGAGGCCTGAGAGCAGGA........................................ 2211.001.00---------------------------------------------------------------------------1.00-----------------------------
.....................................................................................................................................................................................................................................................................................................................GACAGGAGCAGAGAGGCCTGA................................. 2111.001.00---------------------------------------------------------------------------------1.00-----------------------
.........................................................................................................................................................................................................................GGGAGGGCAGAGCCTGAGAG.............................................................................................................................. 201.000.00----------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................GAAGGCTTCCCCGGGCCC..................................................................................................... 181.000.001.00--------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GGGAGGGCAGAGCCTGAG................................................................................................................................ 181.000.00----------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................GCTTTTGCTTTATTTTCG................................................................................................................................................................................................ 181.000.00-------------------------------------------------1.00-------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................GAGAGGCCTGAGAGCAGGAGG........................................... 2111.001.00-------------------------------------1.00-------------------------------------------------------------------
................................................................CCGCCCCGCCCCTTCAGG......................................................................................................................................................................................................................................................................................... 181.000.00------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CCTGAGAGCAGGAGGCGAATTCGATCTC................................................. 2811.001.00---------------------1.00-----------------------------------------------------------------------------------
................CGCGGGAGCCCGCCCC........................................................................................................................................................................................................................................................................................................................................... 1621.001.00------------------------------------------1.00--------------------------------------------------------------
......................................................................................CGAAGCCTCGACCGCGC.................................................................................................................................................................................................................................................................... 171.000.00-------------------------------------------------------------------------------------------1.00-------------
...............................................................CCCGCCCCGCCCCTTCTT.......................................................................................................................................................................................................................................................................................... 181.000.00---------1.00-----------------------------------------------------------------------------------------------
................................................................CCGCCCCGCCCCTTCAAGG........................................................................................................................................................................................................................................................................................ 191.000.00----------------------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................GAGGCCTGAGAGCAGGAGGCGAATT............................................. 2511.001.00-----------------------------------1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................GCTCCTGTCTTTTGTTCTG....................... 191.000.00-----------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................ATTCGCCTCCTGCTCGATG.................................................. 191.000.00--------1.00------------------------------------------------------------------------------------------------
..........................................................GGGCGGGGCGGGGCCGG................................................................................................................................................................................................................................................................................................ 1701.001.00-------------------------------------------------------------------------1.00-------------------------------
..............................................................................................................................................................................................AGGGGCATTCTTCGGTTTT.......................................................................................................................................................... 191.000.00--------1.00------------------------------------------------------------------------------------------------
........................GCCGAGCAGGACCGCGGGAG............................................................................................................................................................................................................................................................................................................................... 2011.001.00-----------1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GAGGGCAGAGCCTGATCG.............................................................................................................................. 181.000.00----------1.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................ATTCGCCTCCTGCTCATGG.................................................. 191.000.00--------1.00------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................ATTCGCCTCCTGCTCATCG.................................................. 191.000.00--------1.00------------------------------------------------------------------------------------------------
.................CGCGGGAGCCCGCCC........................................................................................................................................................................................................................................................................................................................................... 1540.500.50------------------------------------------0.25----------------------------------------------------------0.25---
...........................................................................................................................................................................................................................................................................................................GAGGCCTGAGAGCAGGAGG............................................. 1920.500.50--------------------------------------------------------------------------------------------------0.50------
.........................................................................................................................................................................................................................................................................................................GCCTGAGAGCAGGAGGCG................................................ 1830.330.33---------------------------------------------------------------------------------------------------0.33-----
............................................................................................................................................................................................................................................................................................................AGGCCTGAGAGCAGGAG.............................................. 1770.290.29----------------------------------------------------------------------------------------------------0.29----
.................................................................................................................................................................................................................................................................................TCTCCTCACAAACAG........................................................................... 1570.140.14-------------------------------------------------------------------------------------------------------0.14-
.........................................................................................................................................................................................................................................................................................................................ACAGGAGCAGAGAGGC.................................. 1690.110.11--------------------------------------------------------------------------------------------------------0.11