ID: uc003ocx.1_intron_44_0_chr6_33145484_r
GENE: COL11A2(21)
chr6:33145434-33145958-


(2)
BRAIN 		(6)
BREAST 		(7)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(7)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
XRN.ip

Sense strand
CTCGAGGTCTCCTTGGCCCCAAAGGCCCACCTGGTATTCCTGGACCCCCTGTAAGTGACTCCCTGACTTCTGACCCTGAGGTGACCCCTTGACCTCTCCAACTCTCCACCTTTCTAGCTGCCTTCCTGCTCCCTCTCCTCTCTCGGCATGCTTCCCATTCCCTGTGAGCTCCCCCTGCTCTGGCCCCACACTGCCCTGCCTCAGCATTCGCTCCCCGTGCACAGGGAGGGCCATGTGGCGTGGTGCCCTGAGGGCTCTGGGCATAGGAAATAAATCTTCAAGAAAAACAAAACCAAAGCCCACAAGCCCACAGATCCACAGTCCCACACACTGCAGGCCTGGGCCAGCTGTGTTTGCTTGGGTTTGGGATGGATTGGAGGTCTGACCGTCACACCCTCGGGAATGGCCGGGCCTCTGAAAACCACAGGTCCCTCCGGGCCACCTTCAGGCTGCTCACACCCATCTTGTGTTTCAGGGCGTCCGAGGCATGGATGGTCCCCAGGGCCCCAAAGGGAGCTTGGTGAG
...............................................................................................................................................................................................................................((((..(((....)))((((....(((.(((((.(((((...((.......((.....)).........))...)))))..))))).)))..))))..))))........................................................................................................................................................................................................
...............................................................................................................................................................................................................................224............................................................................................................335............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577743(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189784TAX577739(Rovira)
total RNA. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGATC..................................................................................................................................................................................................2212.000.002.004.001.00-1.00--2.00-1.00----------------------1.00-----
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGAGC..................................................................................................................................................................................................228.000.00----2.001.004.001.00------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACTATC..................................................................................................................................................................................................226.000.002.002.001.00----------------------------1.00------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGACC..................................................................................................................................................................................................224.000.001.00------1.00----------1.00----------------1.00--
........................................................................................................................................................................................................................................................................................................................GATCCACAGTCCCACGATC..................................................................................................................................................................................................193.000.00---1.00-------1.00---------1.00----------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCGACG.....................................................................................................................................................................................................192.000.00-1.00-----------------1.00------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACTTTC..................................................................................................................................................................................................222.000.002.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCGAC......................................................................................................................................................................................................181.000.00---1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCGAAC....................................................................................................................................................................................................201.000.00---1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGGTC..................................................................................................................................................................................................221.000.00-1.00------------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGTCC..................................................................................................................................................................................................221.000.001.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACTCTC..................................................................................................................................................................................................221.000.001.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGAGA..................................................................................................................................................................................................221.000.00----1.00---------------------------------
.........................................................................................................................................................................................................................................................................................................................ATCCACAGTCCCACAATC..................................................................................................................................................................................................181.000.00--1.00-----------------------------------
....................................................................................................................................................................................................................................GGCCATGTGGCGTGGGGGA......................................................................................................................................................................................................................................................................................191.000.00---------------1.00----------------------
......................................................................................................................................................................................................................................................................................................................CAGATCCACAGTCCCACGAA...................................................................................................................................................................................................201.000.00--1.00-----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................CTGACCGTCACACCCCC...............................................................................................................................171.000.00--------1.00-----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCCGGGCCACCGACC..............................................................................191.000.00------------1.00-------------------------
.......................................................................................................................................................................................................................................................................................................................AGATCCACAGTCCCACGA....................................................................................................................................................................................................181.000.001.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................GGGATGGATTGGAGGGGA..............................................................................................................................................181.000.00---------------------------------1.00----
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACCTTC..................................................................................................................................................................................................221.000.00--1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACCATC..................................................................................................................................................................................................221.000.00--1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................TCCACAGTCCCACACTC..................................................................................................................................................................................................171.000.001.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCACGTGC..................................................................................................................................................................................................221.000.00-1.00------------------------------------
......................................................................................................................................................................................................................................................................................................................CAGATCCACAGTCCCACGAC...................................................................................................................................................................................................201.000.00--1.00-----------------------------------
.........................................................................................................................................................................................................................................................................................................................................ACTGCAGGCCTGGGCTGG..................................................................................................................................................................................181.000.00----------------------1.00---------------
..................................................................................................................................................................................................................................AGGGCCATGTGGCGTACG.........................................................................................................................................................................................................................................................................................181.000.00-----------------------1.00--------------
..............................................................................................................TTTCTAGCTGCCTTCCAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------1.00---
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCGATC.....................................................................................................................................................................................................191.000.00---------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................GATCCACAGTCCCACGACA..................................................................................................................................................................................................191.000.00-----1.00--------------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCCGCAT....................................................................................................................................................................................................201.000.00---1.00----------------------------------
...........................................................................................................................................................................................................................CACAGGGAGGGCCATCAGC...............................................................................................................................................................................................................................................................................................191.000.00-------------1.00------------------------
.....................................................................................................................................................................................................................................................................................................................ACAGATCCACAGTCCTGTC.....................................................................................................................................................................................................191.000.00---1.00----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATGGATGGTCC...........................1520.500.50------------0.50-------------------------
.................................GTATTCCTGGACCCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1660.170.17--------------0.17-----------------------

Antisense strand
CTCGAGGTCTCCTTGGCCCCAAAGGCCCACCTGGTATTCCTGGACCCCCTGTAAGTGACTCCCTGACTTCTGACCCTGAGGTGACCCCTTGACCTCTCCAACTCTCCACCTTTCTAGCTGCCTTCCTGCTCCCTCTCCTCTCTCGGCATGCTTCCCATTCCCTGTGAGCTCCCCCTGCTCTGGCCCCACACTGCCCTGCCTCAGCATTCGCTCCCCGTGCACAGGGAGGGCCATGTGGCGTGGTGCCCTGAGGGCTCTGGGCATAGGAAATAAATCTTCAAGAAAAACAAAACCAAAGCCCACAAGCCCACAGATCCACAGTCCCACACACTGCAGGCCTGGGCCAGCTGTGTTTGCTTGGGTTTGGGATGGATTGGAGGTCTGACCGTCACACCCTCGGGAATGGCCGGGCCTCTGAAAACCACAGGTCCCTCCGGGCCACCTTCAGGCTGCTCACACCCATCTTGTGTTTCAGGGCGTCCGAGGCATGGATGGTCCCCAGGGCCCCAAAGGGAGCTTGGTGAG
...............................................................................................................................................................................................................................((((..(((....)))((((....(((.(((((.(((((...((.......((.....)).........))...)))))..))))).)))..))))..))))........................................................................................................................................................................................................
...............................................................................................................................................................................................................................224............................................................................................................335............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577743(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189784TAX577739(Rovira)
total RNA. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................................................................................................................................TTTCCTATGCCCAGAGCC............................................................................................................................................................................................................................................................... 1812.002.00----------2.00---------------------------
......................................................................................................................................................CTTCCCATTCCCTGTGAC..................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------1.00-----------------
...........................................................................................................................................................................................ACACTGCCCTGCCTCATAG............................................................................................................................................................................................................................................................................................................................... 191.000.00-----1.00--------------------------------
..................................................................CTTCTGACCCTGAGGGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00----------------------------1.00---------
.........................................................................................................CCACCTTTCTAGCTGGGGC................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00---------------------------1.00----------
.................................................TGTAAGTGACTCCCTGATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-----1.00--------------------------------
..............................................................................................................TTTCTAGCTGCCTTCCTTA............................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------1.00--------
...........................................................................................................................................................CATTCCCTGTGAGCTCCAAA.............................................................................................................................................................................................................................................................................................................................................................. 201.000.00-----------1.00--------------------------
..............................................................................................................TTTCTAGCTGCCTTCCTA............................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00--------------------------1.00-----------
........................................................................................................................................................................................................................................................................................AGAAAAACAAAACCAAACTC................................................................................................................................................................................................................................. 201.000.00------------------------1.00-------------
......................................................................................................................................................................................................................................................................................................AAAGCCCACAAGCCCAAT..................................................................................................................................................................................................................... 181.000.00-----------------1.00--------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGGGCGTCCGTCTG...................................... 191.000.00--------------1.00-----------------------
.....................................................................CTGACCCTGAGGTGAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00-----------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGCGTCCGAGGCTGT................................... 191.000.00--1.00-----------------------------------
......................................................................TGACCCTGAGGTGACCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------------1.00------------
...........................................................................................................................................................................................................................................TGGCGTGGTGCCCTGTGTT............................................................................................................................................................................................................................................................................... 191.000.00----------------1.00---------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGTCCCTCCGA........................................................................................ 171.000.00------------------------------1.00-------
..................................................................................................AGAAAGGTGGAGAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................... 1730.330.33------------------------------------0.33-
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGGACCTGTGG......................................................................................... 1550.200.20-------------0.20------------------------
................................................................................................................CAGGAAGGCAGCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................. 1690.110.11-------------------------------------0.11