ID: uc003nxe.2_intron_7_0_chr6_31748716_r
GENE: (22)
chr6:31748666-31748845-


(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(4)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(3)
HEART
(3)
HELA
(4)
LIVER
(6)
OTHER
(5)
SKIN
(2)
UTERUS

Sense strand
TAGGCAATGTCATCGATCCCCTGGACGTCATCTATGGAATCTCCCTGCAGGTGGGCTGGGTGCTGGGCCAGCCAGGAAGGGCCGTGGGGCTGTGGTCACAGCCACCTGACTGCTCCCACTCCACCCTCAGGGCCTCCACAACCAGCTGCTGAACAGCAACCTGGATCCCAGCGAGGTGGA
.............................................................................((((..((((((..(((((((........)))))))))))))....)))).....................................................
............................................................................77...................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037938(GSM510476)
293Red. (cell line)
SRR189785SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189784SRR037943(GSM510481)
293DcrTN. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
............................................................................................................ACTGCTCCCACTCCACCCTCAG..................................................22125.0025.0022.00------------------------------1.00-1.00------1.00-----
............................................................................................................ACTGCTCCCACTCCACCCTCA...................................................21110.0010.009.00--1.00------------------------------------------
............................................................................................................ACTGCTCCCACTCCACCCTCAGT.................................................23110.0025.001.00-4.00-----2.001.00-----------------1.00--1.00---------------
..................................................GTGGGCTGGGTGCTGGGCCAGCCAGGAAGGGCCGTGGGGCTGTGGTCACAGCCACCTGACTGCTCCCACTCCACCCT.....................................................7716.006.00-6.00--------------------------------------------
............................................................................................................ACTGCTCCCACTCCACCTTCA...................................................2133.000.333.00---------------------------------------------
..........................................................................................................TGACTGCTCCCACTCCACCCTCAG..................................................2412.002.00-------1.00---------1.00----------------------------
.............................................................GCTGGGCCAGCCAGG........................................................................................................1502.002.00-----1.00-------1.00--------------------------------
..........................................................................................................TGACTGCTCCCACTCCACCCTCA...................................................2312.002.00------------------------------------1.001.00--------
..................................................GTGGGCTGGGTGCTGGGCCAGCCAGG........................................................................................................2612.002.00----------2.00-----------------------------------
.................................................................................CCGTGGGGCTGTGGTCACAGCCA............................................................................2312.002.00-----------2.00----------------------------------
.....................................................................................................CCACCTGACTGCTCCCACTCCATT.......................................................241.000.001.00---------------------------------------------
........GTCATCGATCCCCTGGATG.........................................................................................................................................................191.000.00-----1.00----------------------------------------
...................CCTGGACGTCATCTATGGAATCTCCC.......................................................................................................................................2611.001.00------------------------------------------1.00---
............................................................................................................ACTGCTCCCACTCCACCCTCAC..................................................2211.0010.00---1.00------------------------------------------
.............................................................................................................CTGCTCCCACTCCACCCTCAGA.................................................221.000.00--------------------------1.00-------------------
..........................................................................................................................................................AGCAACCTGGATCCCCTC........181.000.00-------------------1.00--------------------------
............................................CTGCAGGTGGGCTGGGTTTG....................................................................................................................201.000.00------------------1.00---------------------------
..........................................................................................................TGACTGCTCCCACTCCACC.......................................................1911.001.00--------------------1.00-------------------------
......ATGTCATCGATCCCCTGGACGTCATCTATGG...............................................................................................................................................3111.001.00----1.00-----------------------------------------
............................................................................................................ACTGCTCCCACTCCACCCTCAA..................................................2211.0010.001.00---------------------------------------------
..................................................GTGGGCTGGGTGCTGGGCCAGCCAGGAAGGGCCGTGGGGCTGTGGTCACAGCCACCTGACTGCTCCCACT............................................................7011.001.00------1.00---------------------------------------
..................................................................................................................................................TGCTGAACAGCAACCTGGATT.............211.000.00---------------------------------------1.00------
.................................................................................................................................GGGCCTCCACAACCAGCTGCT..............................2111.001.00----1.00-----------------------------------------
..........................................................................................................TGACTGCTCCCACTCCACCCTCAGT.................................................2511.002.001.00---------------------------------------------
.AGGCAATGTCATCGATCCCCT..............................................................................................................................................................2111.001.00-----------------------------------1.00----------
...............ATCCCCTGGACGTCATCTA..................................................................................................................................................1911.001.00----------------------------1.00-----------------
..................................................GTGGGCTGGGTGCTGGGCCAGCCAGGAAGGGCCGTGGGGCTGTGGTCACAGCCACCTGACTGCTCCCACTCCACCCTCAG..................................................8011.001.00------1.00---------------------------------------
..........................................................................GGAAGGGCCGTGGGGCTG........................................................................................1811.001.00--------------------------------------1.00-------
..................................................GTGGGCTGGGTGCTGGGCCAGCCAGGAAGG....................................................................................................3011.001.00------------------------1.00---------------------
...............................................................................GGCCGTGGGGCTGTGGGGGG.................................................................................201.000.00---------------------1.00------------------------
............................................................................................................ACTGCTCCCACTCCACCCTCATTA................................................2411.0010.001.00---------------------------------------------
............................................................................................................ACTGCTCCCACTCCACCCACAG..................................................221.000.001.00---------------------------------------------
....................................................................................................................................................CTGAACAGCAACCTGGATC.............1911.001.00----------------------------------1.00-----------
............................................................................................................ACTGCTCCCACTCCACTCTC....................................................201.000.001.00---------------------------------------------
....................................................................CAGCCAGGAAGGGCCGTGGGGCTGTGGTCAC.................................................................................3111.001.00--------------1.00-------------------------------
..........................................................................................................TGACTGCTCCCACTCCACCCTC....................................................2211.001.00------------1.00---------------------------------
..........................................................................................................TGACTGCTCCCACTCCACCCTCAT..................................................2411.002.00---------1.00------------------------------------
............................................................................................................ACTGCTCCCACTCCACCCCCAG..................................................221.000.00----------------1.00-----------------------------
............................................................................................................ACTGCTCCCACTCCACCCTCAGC.................................................2311.0025.00-----------------------1.00----------------------
......................GGACGTCATCTATGGAATCTCCCTGCAGGGCC..............................................................................................................................321.000.00---------------1.00------------------------------
............................................................................................................ACTGCTCCCACTCCACCCTC....................................................2011.001.001.00---------------------------------------------
.....................................................................................................CCACCTGACTGCTCCCACTCCACCCTCT...................................................281.000.001.00---------------------------------------------
...................................................................................................................................................GCTGAACAGCAACCTGGAT..............1911.001.00----1.00-----------------------------------------
.................................................................................................................................GGGCCTCCACAACCAGCTGC...............................2011.001.00--------------------------------1.00-------------
..........................................................................................................TGACTGCTCCCACTCCACCCCCAT..................................................241.000.00-------1.00--------------------------------------
................................TATGGAATCTCCCTGCAG..................................................................................................................................1820.500.50-------------0.50--------------------------------
............................................................................................................ACTGCTCCCACTCCACC.......................................................1730.330.33------------0.33---------------------------------
..................................................GTGGGCTGGGTGCTGGGC................................................................................................................1830.330.33------------0.33---------------------------------
.............................................................GCTGGGCCAGCCAGGA.......................................................................................................1680.250.25-----0.12---------------------------------------0.12
..................................................GTGGGCTGGGTGCTGGG.................................................................................................................1750.200.20--------------------------------------------0.20-
.............................................................................................................CTGCTCCCACTCCACC.......................................................1680.120.12--------------0.12-------------------------------

Antisense strand
TAGGCAATGTCATCGATCCCCTGGACGTCATCTATGGAATCTCCCTGCAGGTGGGCTGGGTGCTGGGCCAGCCAGGAAGGGCCGTGGGGCTGTGGTCACAGCCACCTGACTGCTCCCACTCCACCCTCAGGGCCTCCACAACCAGCTGCTGAACAGCAACCTGGATCCCAGCGAGGTGGA
.............................................................................((((..((((((..(((((((........)))))))))))))....)))).....................................................
............................................................................77...................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037938(GSM510476)
293Red. (cell line)
SRR189785SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189784SRR037943(GSM510481)
293DcrTN. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.........................................................................AGGAAGGGCCGTGGGGCCAG....................................................................................... 201.000.00-----------------------------------------1.00----
.................................................................................................................................GGGCCTCCACAACCAGCG................................. 181.000.00-------------------------1.00--------------------
...................CCTGGACGTCATCTACT................................................................................................................................................ 171.000.00----------------------1.00-----------------------
.....................................................................................................................ACTCCACCCTCAGGGATG............................................. 181.000.00---1.00------------------------------------------
.......................................................................CCAGGAAGGGCCGTGGGTCT......................................................................................... 201.000.00-----------------------------1.00----------------
................................................................................................GCAGTCAGGTGGCTGTG................................................................... 1750.200.20-------------------------------------------0.20--