ID: uc003nwt.1_intron_16_0_chr6_31727290_f
GENE: (17)
chr6:31727240-31727612+


(1)
AGO2.ip 		(4)
B-CELL 		(8)
BRAIN 		(15)
BREAST 		(10)
CELL-LINE 		(7)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(3)
OTHER 		(9)
SKIN 		(2)
UTERUS

Sense strand
AACCAAGGAGCTGGATGCATTGCTGGGGGACCTGCACTGCGAGATCCGGGGTGAGGAAAAGCCAGAGGTTATATGCATTGTAAGATGTTTAAAAAAAGCAGCAGCCAGGGGAAGGAGGGGAGTGGGCAACTTGGGGATGCTTCCAACAGGCCCCTCCTCTTCCTGCTCTCTGTCTCGCTCACTCTGACTCTATCTTTTCCTCTGAATGTCTTGAGGTCTCAGATTGTATCTGCAACCTGTTTCCAGATCCCCCTAGGGGCCTCTGCCTCTCCTTCACTTTCCCCTGGAACTGACCTCCAGCTCCCTTCCTCACCCACTCCCAGACCAGGAGACGCTGCTGATGTACCAGCTACAGTGCCAGGTGCTGGCACGA
................................................................................................................................................................................((.((.(((((...........((((..........))))..))))).)).....))............................................................................................................................................
....................................................................................................................................................................165.....................................................................237......................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577580(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189782GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787TAX577579(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532877(GSM532877)
G691N. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGTT............................................................................................................................................2229.000.003.00-3.00---4.003.00-2.003.00-1.00--1.00---1.001.00-1.00-1.001.00--1.00----1.00--------------------1.001.00-------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATATTT............................................................................................................................................2210.000.002.00--1.002.00---1.00----------1.00----1.00----------------1.00------------------1.00--
.............GATGCATTGCTGGGGGAC......................................................................................................................................................................................................................................................................................................................................................18110.0010.00-10.00-------------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGT.............................................................................................................................................219.000.002.00-1.001.00-----------1.00-----1.00-----------------------1.001.00-----1.00----------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATATT.............................................................................................................................................214.000.001.00--1.00-------1.00-----------1.00---------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGTG............................................................................................................................................223.000.00--------1.00-------1.00-----1.00----------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAG..............................................................................................................................................203.000.00--1.00--1.00-------------------1.00-------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATCGTT............................................................................................................................................223.000.00--1.00-1.00------------------------------------------1.00---------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGGGT............................................................................................................................................223.000.00------------1.00---1.00---1.00------------------------------------------
.........................................................................................................................................................................CTGTCTCGCTCACTCTGACTCTG.....................................................................................................................................................................................233.000.00--------------3.00------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGGTT............................................................................................................................................223.000.001.00---1.00---------------------------------------------------1.00------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGTTT............................................................................................................................................223.000.00---1.001.00--------1.00-------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGCT............................................................................................................................................222.000.00--1.00-----1.00------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATCGGT............................................................................................................................................222.000.00----1.00--1.00-------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATATGT............................................................................................................................................222.000.001.00------------------------------------------------------------1.00-
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGTA............................................................................................................................................222.000.00----1.00--------1.00-------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGGT............................................................................................................................................222.000.00-----------1.00-----------1.00---------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGTGT............................................................................................................................................222.000.001.00------------1.00-------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATTGTT............................................................................................................................................222.000.00----1.00----------------1.00-----------------------------------------
................................................................................................................................................................TCCTGCTCTCTGTCTCGCTCACTCT............................................................................................................................................................................................2511.001.00----------------------------------------1.00----------------------
..............................................................................................................................................................................................................................................................AGGGGCCTCTGCCTCTACC....................................................................................................191.000.00-------------------------------1.00-------------------------------
.................................................................................................................................................................................................................................................................................................................................................CTGATGTACCAGCTACAGTGCCAG............2411.001.00------------------------------------------------1.00--------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTAGTGG.............................................................................................................................................211.000.00----------------------------------------------------------1.00----
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATA...............................................................................................................................................191.000.00------------------1.00--------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTCT................................................................................................................................................181.000.00------------------1.00--------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTACATT.............................................................................................................................................211.000.00--------------------------------------------------1.00------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGTTG............................................................................................................................................221.000.00---1.00-----------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATCGCT............................................................................................................................................221.000.00---1.00-----------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGCC............................................................................................................................................221.000.001.00--------------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGG..............................................................................................................................................201.000.00--1.00------------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGGT.............................................................................................................................................211.000.001.00--------------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATATGG............................................................................................................................................221.000.00--1.00------------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGCTT............................................................................................................................................221.000.001.00--------------------------------------------------------------
........................................GAGATCCGGGGTGAGGAAAAGC.......................................................................................................................................................................................................................................................................................................................2211.001.00---------------1.00-----------------------------------------------
...............................CTGCACTGCGAGATCCGGG...................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00-----------
....................................................................................................................................................................................................................GAGGTCTCAGATTGTATAGTT............................................................................................................................................211.000.00------------1.00--------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATTGT.............................................................................................................................................211.000.00---1.00-----------------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGGACG...............................................................................................................................................191.000.00------1.00--------------------------------------------------------
.................................GCACTGCGAGATCCGGGGTGAGGAAAAGC.......................................................................................................................................................................................................................................................................................................................2911.001.00-----------------1.00---------------------------------------------
.............................................................................................................GGAAGGAGGGGAGTGTC.......................................................................................................................................................................................................................................................171.000.00---------1.00-----------------------------------------------------
.......................TGGGGGACCTGCACTGCGAGATCCGGG...................................................................................................................................................................................................................................................................................................................................2711.001.00-----------------------------------1.00---------------------------
...CAAGGAGCTGGATGCATTGCTGGGGGACC.....................................................................................................................................................................................................................................................................................................................................................2911.001.00-----------------------------1.00---------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATCT..............................................................................................................................................2011.001.00-----1.00---------------------------------------------------------
....AAGGAGCTGGATGCATTGCTGGGGGACCT....................................................................................................................................................................................................................................................................................................................................................2911.001.00-----------------1.00---------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATAGAT............................................................................................................................................221.000.00-----------1.00---------------------------------------------------
...................................................................................................................................................................................................................TGAGGTCTCAGATTGTATGGG.............................................................................................................................................211.000.00--------1.00------------------------------------------------------

Antisense strand
AACCAAGGAGCTGGATGCATTGCTGGGGGACCTGCACTGCGAGATCCGGGGTGAGGAAAAGCCAGAGGTTATATGCATTGTAAGATGTTTAAAAAAAGCAGCAGCCAGGGGAAGGAGGGGAGTGGGCAACTTGGGGATGCTTCCAACAGGCCCCTCCTCTTCCTGCTCTCTGTCTCGCTCACTCTGACTCTATCTTTTCCTCTGAATGTCTTGAGGTCTCAGATTGTATCTGCAACCTGTTTCCAGATCCCCCTAGGGGCCTCTGCCTCTCCTTCACTTTCCCCTGGAACTGACCTCCAGCTCCCTTCCTCACCCACTCCCAGACCAGGAGACGCTGCTGATGTACCAGCTACAGTGCCAGGTGCTGGCACGA
................................................................................................................................................................................((.((.(((((...........((((..........))))..))))).)).....))............................................................................................................................................
....................................................................................................................................................................165.....................................................................237......................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577580(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189782GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787TAX577579(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532877(GSM532877)
G691N. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
.....................................................................................................................................................GAGCAGGAAGAGGAGGGGC............................................................................................................................................................................................................. 1923.003.00--------------------------0.501.50----1.00------------------------------
...........................................................................................................................................................CCTCTTCCTGCTCTCTTGG....................................................................................................................................................................................................... 191.000.00-------------------------------------------1.00-------------------
...........................................................................................................................................................................................................................................................................................................GCTCCCTTCCTCACCCACC....................................................... 191.000.00-----------------------------------------------------1.00---------
............................................................................................................................................................................................................................................................................................................CTCCCTTCCTCACCCACTT...................................................... 191.000.00----------------------------------1.00----------------------------
..............................................................................................................................................................................................................................................................AGGGGCCTCTGCCTCTCCCG................................................................................................... 201.000.00-----1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................AGCTACAGTGCCAGGCATG....... 191.000.00------------------------------------------1.00--------------------
...........................................................................................................................................................................................................GAATGTCTTGAGGTCTCATG...................................................................................................................................................... 201.000.00---------1.00-----------------------------------------------------
............................................................................................................................................................................................................................................................................................................CTCCCTTCCTCACCCA......................................................... 161.000.00-------------------------------------1.00-------------------------
......................................................................................................................................................................................................................................TGCAACCTGTTTCCAGATAA........................................................................................................................... 201.000.00-----1.00---------------------------------------------------------
.................................................................................................TCCCCTGGCTGCTGC..................................................................................................................................................................................................................................................................... 1501.001.00--------------------------------------------1.00------------------
............................................................................ATTGTAAGATGTTTAAACTCA.................................................................................................................................................................................................................................................................................... 211.000.00-----1.00---------------------------------------------------------
..................................................................................................CAGCAGCCAGGGGAAAA.................................................................................................................................................................................................................................................................. 171.000.00---------------------------------------1.00-----------------------
............................................................................................................................................................................................................................................................................................................GTGGGTGAGGAAGGGAG........................................................ 1751.001.00--------------------------------------1.00------------------------
.........................................................................................................................................................................................................................................................................GGGAAAGTGAAGGAGAGG.......................................................................................... 1821.001.00------------------------------1.00--------------------------------
.....................................................................................................................................................CAGAGAGCAGGAAGAGGAGGGGC......................................................................................................................................................................................................... 2311.001.00--------------------------1.00------------------------------------
.......................................................................................................................................................CCCTCCTCTTCCTGCTCTCAC......................................................................................................................................................................................................... 211.000.00------------------------------------1.00--------------------------
..................................................................................................................................................CAGGCCCCTCCTCTTCCTG................................................................................................................................................................................................................ 191.000.00---1.00-----------------------------------------------------------
..........................................................................................AAAAAAAGCAGCAGCCATAAC...................................................................................................................................................................................................................................................................... 211.000.00-------------------------------------------------1.00-------------
.....................................................................................................................................................................................................................................................................................................................................CAGGAGACGCTGCTGTTG.............................. 181.000.00-----1.00---------------------------------------------------------
......................................................................................................................................................CCCCTCCTCTTCCTGCTCTCG.......................................................................................................................................................................................................... 211.000.00-----------------------------------------------------------1.00---
........................................................................................................................................................................................................................................................................TCCAGGGGAAAGTGAAGGAGAGGC..................................................................................... 2411.001.00---------------------------------------------------------1.00-----
.....................................................................................................................................................AGCAGGAAGAGGAGGGGC.............................................................................................................................................................................................................. 1830.670.67--------------------------0.33-----------------------------------0.33