ID: uc003jmo.2_intron_1_0_chr5_41907945_f.3p
GENE: (2)
chr5:41909648-41909897+


(2)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
AATACCTATGAAGTTTTCTTTAAAATCTTTCTCAAATTATATTTACATCTAGACATTTTGCCTACTTCTCAAATTTACATACTGAGCTAGAAGATTTAAATGTGTAATAAAGCACCTATGTGTGCAAGGTTAGACTGTAAGAATTGTTTTTTTTCAATTTTAAGTCATTGATAGATATCTTTCTTTTTTTTTTTTTTTAGGCTATTTTGGACATGACATATTTTGAGGAGAACAAGCTAGTAGATGAAGA
......................................................................................((((((((.......((.((((...((((......))))...)))).))...(((((.(((((....(((((........))))).)))))...))))).......))))))))..................................................
...................................................................................84..................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR343337SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
............................................................................................GATTTAAATGTGTAATAAAGCACCTATGTG................................................................................................................................3013.003.00-------3.00------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTAAG..................................................242.000.00----1.001.00--------------------------
...........................................................................................................................................................................................................ATTTTGGACATGACATATTTTGAGGT.....................262.000.00--2.00-----------------------------
.................................................................................................................................................................................................................................AGGAGAACAAGCTAGTAGATGA...2212.002.00------------1.00-------1.00-----------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTTTCG..................................................252.000.001.001.00------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTAAAG..................................................251.000.00-----------1.00--------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTGTAG................................................261.000.00-1.00------------------------------
..............................................................................................................................................................................................................................TTGAGGAGAACAAGCTAGTAGATG....2411.001.00--1.00-----------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTACT........................................................181.000.00---1.00----------------------------
.......................................................................................................................................................................................................GGCTATTTTGGACATGACA................................1911.001.00-------------1.00------------------
......................................................................................................................................................................................................AGGCTATTTTGGACATGACATA..............................2211.001.00---------------------------1.00----
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTGAGG................................................261.000.001.00-------------------------------
..............................................................................................................................................................................................................TTGGACATGACATATTTTGA........................2011.001.00----------1.00---------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTTCGA..................................................251.000.00------1.00-------------------------
..............................................................................................................................................................................ATATCTTTCTTTTTTTTTTTTTAG....................................................241.000.00-----1.00--------------------------
......................................................................................................................................................................................................AGGCTATTTTGGACATGACATATTTTGAGG......................3011.001.00--------------1.00-----------------
......................................................................................................................................................................................................AGGCTATTTTGGACATGAC.................................1911.001.00--------1.00-----------------------
........................................................................................AGAAGATTTAAATGTGCCT...............................................................................................................................................191.000.00------------------1.00-------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTACC..................................................241.000.00-1.00------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTACG.......................................................201.000.00----1.00---------------------------
................................................................................................................................................................................................................................GAGGAGAACAAGCTAGTAGA......2011.001.00--1.00-----------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTGGAG................................................261.000.001.00-------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTATAG......................................................201.000.00-----1.00--------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTAAAG..................................................241.000.00-----------1.00--------------------
..............................................................................................................................................................................ATATCTTTCTTTTTTCCG..........................................................181.000.00---1.00----------------------------
.....................................................................................................................................................................................................................TGACATATTTTGAGGAGT...................181.000.00---------1.00----------------------
..............................................................................................................................................................................ATATCTTTCTTTTTTTTTTTTTTGTC..................................................261.000.001.00-------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTTCC...................................................241.000.001.00-------------------------------
...................................................................................................................................................................................................................................GAGAACAAGCTAGTAGATGAAG.2221.001.00----------------1.00---------------
...................................................................................................................................................TTTTTTTCAATTTTAATTG....................................................................................191.000.00---1.00----------------------------
.......................................................................................................................GTGTGCAAGGTTAGACTGTA...............................................................................................................2011.001.00---------------1.00----------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTCGAG................................................261.000.001.00-------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTTTCGG.................................................261.000.001.00-------------------------------
..............................................................................................................................................................................ATATCTTTCTTTTTTTTTTTTTTGGC..................................................261.000.001.00-------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTCGGG................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................GACATGACATATTTTGAGGAGAAC.................2411.001.00--1.00-----------------------------
...................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTAGGGTTT.............................................261.000.00-1.00------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTGGTC...................................................231.000.001.00-------------------------------
..............................................................................................................................................................................ATATCTTTCTTTTTTTCAT.........................................................191.000.00------1.00-------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTAAC...................................................231.000.00-1.00------------------------------
...............................................................................................................................GGTTAGACTGTAAGAATTGTTTTTTTTCAATTT..........................................................................................3311.001.00---------1.00----------------------
.............................................................................................................................................................................................................TTTGGACATGACATATTTTGAGGAG....................2511.001.00---------------------1.00----------
.............................................................................................................................................................................................................................TTTGAGGAGAACAAGCTAGTAGAT.....2411.001.00--1.00-----------------------------
.......................................................................................................................................................................................................GGCTATTTTGGACATGACATA..............................2111.001.00--------1.00-----------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTATTG....................................................221.000.00----1.00---------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTGGAG.......................................................191.000.00-1.00------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTCTGC..................................................251.000.001.00-------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTGCGG................................................261.000.001.00-------------------------------
.....................................................................................................................................................................................TCTTTTTTTTTTTTTTTAGGCGGG.............................................241.000.001.00-------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTATT.................................................251.000.001.00-------------------------------
.......................................................................................................................................................................................................................................ACAAGCTAGTAGATGAAG.1821.001.00--1.00-----------------------------
..................................................................................................................................................................................................................ACATGACATATTTTGAGGAGAACAAGC.............2711.001.00-------------------------1.00------
...................................ATTATATTTACATCTAGACATTT................................................................................................................................................................................................2311.001.00------------1.00-------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTCTAG...................................................241.000.00---1.00----------------------------
..................................................................................TGAGCTAGAAGATTTGA.......................................................................................................................................................171.000.00------------------------1.00-------
.........................................................................................................................................................................................................................ATATTTTGAGGAGAACAAGCTAGTAGA......2711.001.00----------------------1.00---------
.................................................................................................................................................................................................................................AGGAGAACAAGCTAGTAGATG....2111.001.00-----------------------1.00--------
................TCTTTAAAATCTTTCTCACG......................................................................................................................................................................................................................201.000.00------1.00-------------------------
..............................................................................................................................................................................ATATCTTTCTTTTTTTTTTTTTTTCGAG................................................281.000.001.00-------------------------------
......................................................................................................................................................................................................................................AACAAGCTAGTAGATGAAGA2011.001.00----------1.00---------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTGGA........................................................181.000.001.00-------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTTCTAT.................................................261.000.00---1.00----------------------------
...............................................................................................................................GGTTAGACTGTAAGAATTGTG......................................................................................................211.000.00----------------------------1.00---
.................................................................................................................................................GTTTTTTTTCAATTTCAAT......................................................................................191.000.00----1.00---------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTGGTC................................................261.000.001.00-------------------------------
...............................................................................................................................................................................TATCTTTCTTTTTTTTTTTTTTTACG.................................................261.000.001.00-------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTCTGT................................................261.000.00-1.00------------------------------
...............................................................................................................................................................................................................TGGACATGACATATTTTGAGGAGAACA................2711.001.00-----------------1.00--------------
...................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTAGGCAGAT............................................271.000.00-1.00------------------------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTTTCAG.................................................251.000.00-----1.00--------------------------
..................................................................................TGAGCTAGAAGATTTATAG.....................................................................................................................................................191.000.00-------------------1.00------------
................................................................................................................................................................................ATCTTTCTTTTTTTTTTTTTAAGG..................................................241.000.00------1.00-------------------------
....................................................................................................................................................................................TTCTTTTTTTTTTTTTTTAGGCTAGGCG..........................................281.000.001.00-------------------------------
.........................................................................................................................................................................................................................ATATTTTGAGGAGAACA................1720.500.50-------------0.50------------------
...........................................................................................................................................................................................................ATTTTGGACATGACATAT.............................1820.500.50-----------------------------0.50--
.................................................................................................................................................................................TCTTTCTTTTTTTTTTTTTTTAGGC................................................2530.330.330.33-------------------------------
...............................................................................................................................................................................................................TGGACATGACATATTTTG.........................1830.330.33--0.33-----------------------------
.................................................................................CTGAGCTAGAAGATTT.........................................................................................................................................................1680.120.12-------------------------------0.12

Antisense strand
AATACCTATGAAGTTTTCTTTAAAATCTTTCTCAAATTATATTTACATCTAGACATTTTGCCTACTTCTCAAATTTACATACTGAGCTAGAAGATTTAAATGTGTAATAAAGCACCTATGTGTGCAAGGTTAGACTGTAAGAATTGTTTTTTTTCAATTTTAAGTCATTGATAGATATCTTTCTTTTTTTTTTTTTTTAGGCTATTTTGGACATGACATATTTTGAGGAGAACAAGCTAGTAGATGAAGA
......................................................................................((((((((.......((.((((...((((......))))...)))).))...(((((.(((((....(((((........))))).)))))...))))).......))))))))..................................................
...................................................................................84..................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR343337SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................................GCCTAAAAAAAAAAAAAAA................................................ 1901.001.00--------------------------1.00-----
................................................................................................................................................................................................................................TAGCTTGTTCTCCTC........... 1560.330.33------------------------------0.33-