ID: uc003jiu.2_intron_8_0_chr5_34880414_f.3p
GENE: (9)
chr5:34896675-34896924+


(1)
BRAIN
(5)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(1)
HELA
(1)
LIVER
(2)
OTHER
(2)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
TGCAGGTGGTAATAAAGATAAATAAAACATGGTCATTAATCTTAAGGGGACAACATTCTAGTGTAAGAGAAAACATGAAGAAATAATAACATGAAATTTAAGTTCTGGAATAGCATTCTCAGTGCAATGAAAGGAGAGACAATCTATGAGAATTGGAAAACACTTCATAGAGAGGGTGACATTTGAGCCATTTCTTAAAGGACAAGTAGCAGTTCATCCAGATGGAGAAGAGAAGCCATTCCTGGAAGAA
.............................................................(((.........((((............)))).........((((...((.((((.....)))).))...))))...))).............................................................................................................
...........................................................60................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577740(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR038854(GSM458537)
MM653. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................CAGTGCAATGAAAGGGCAT................................................................................................................19381.000.00327.0022.0012.005.003.00----1.001.001.001.001.00--1.001.001.001.00-1.001.001.00------
.......................................................................................................................CAGTGCAATGAAAGGGCA.................................................................................................................1824.000.0017.003.001.001.00-----------1.00-----------1.00--
.......................................................................................................................CAGTGCAATGAAAGGGCAC................................................................................................................197.000.006.00-1.00---------------------------
.......................................................................................................................CAGTGCAATGAAAGGGCAA................................................................................................................195.000.004.00------------------------1.00----
.......................................................................................................................CAGTGCAATGAAAGGGTAT................................................................................................................194.000.002.002.00----------------------------
.......................................................................................................................CAGTGCAATGAAAGGGC..................................................................................................................172.000.002.00-----------------------------
.......................................................................................................................CAGTGCAATGAAAGGGCCT................................................................................................................192.000.002.00-----------------------------
.....................................................................................................................................................................................................AAGGACAAGTAGCAGTTCTT.................................201.000.00-------1.00----------------------
................................................................AAGAGAAAACATGAAGTAT.......................................................................................................................................................................191.000.00------------------------1.00-----
.......................................................................................................................CAGTGCAATGAAAGGGGAC................................................................................................................191.000.001.00-----------------------------
.......................................................................................................................CAGTGCAATGAAAGGACA.................................................................................................................181.000.001.00-----------------------------
.......................................................................................................................CAGTGCAATGAAAGGGAAT................................................................................................................191.000.001.00-----------------------------
...........................................................................................................................................................................................................AAGTAGCAGTTCATCATA.............................181.000.00--------------1.00---------------
...................................................................................................................................................................................................TAAAGGACAAGTAGCAGTTCATCCAGA............................2711.001.00-------1.00----------------------
.......................................................................................................................CAGTGCAATGAAAGGGGAT................................................................................................................191.000.001.00-----------------------------
...........................................................................................................................................................................................................................AGATGGAGAAGAGAAGCC.............1840.250.25----------------------------0.25-
..............................................................................................................................................................................................TTTCTTAAAGGACAAG............................................1680.120.12-----------------------------0.12

Antisense strand
TGCAGGTGGTAATAAAGATAAATAAAACATGGTCATTAATCTTAAGGGGACAACATTCTAGTGTAAGAGAAAACATGAAGAAATAATAACATGAAATTTAAGTTCTGGAATAGCATTCTCAGTGCAATGAAAGGAGAGACAATCTATGAGAATTGGAAAACACTTCATAGAGAGGGTGACATTTGAGCCATTTCTTAAAGGACAAGTAGCAGTTCATCCAGATGGAGAAGAGAAGCCATTCCTGGAAGAA
.............................................................(((.........((((............)))).........((((...((.((((.....)))).))...))))...))).............................................................................................................
...........................................................60................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577740(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR038854(GSM458537)
MM653. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........TAATAAAGATAAATAAAATAG............................................................................................................................................................................................................................ 213.000.00------2.00-1.00---------------------
.........................................................................................................................................GACAATCTATGAGAATTAA.............................................................................................. 193.000.00-----3.00------------------------
.....................................................................AAAACATGAAGAAATAAGG.................................................................................................................................................................. 191.000.00--------------------------1.00---
..........AATAAAGATAAATAAAACATT........................................................................................................................................................................................................................... 211.000.00------1.00-----------------------
.........TAATAAAGATAAATAAAATAT............................................................................................................................................................................................................................ 211.000.00--------1.00---------------------
.................................................................................................................TTCATTGCACTGAGAATG....................................................................................................................... 1811.001.00--------------------1.00---------