ID: uc003inw.2_intron_5_0_chr4_155180909_r.3p
GENE: DCHS2(19)
chr4:155180859-155181108-


(1)
AGO1.ip
(1)
AGO2.ip
(1)
B-CELL
(14)
CELL-LINE
(1)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(1)
SKIN
(1)
TESTES

Sense strand
CAACTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGTAGGTTGCAGTGAGCCGAGATTTCACCACTGCACTCCAGCCTGGGCGACAGTGCGAGACTCTGTCTCAAAACTAAATAAATAAATAAAATAAAAAATAAAAGAATAACTACAACATCATTTTCTTTTTTTTCTCCTTGGAAATAAAAATAGGACAACTCACTGTGAAAGAACCCAAGTTTCTTGATTTTGAAGTCAGAAAT
..........................................................................(((..(((((...((....))...)))))(((((...)))))..........................(((.(((((((................))))))).))).....)))..............................................................
..................................................................67.......................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR189786SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................................................................................................................CATCATTTTCTTTTTTTTTTTG..................................................................229.000.00--3.003.001.002.00---------------------
.....................CAGGAGAATCGCTTGAACCCGGGTAAT..........................................................................................................................................................................................................276.000.00------6.00--------------------
.....................CAGGAGAATCGCTTGAACCCGGTAAT...........................................................................................................................................................................................................264.000.00------4.00--------------------
.AACTACTCAGGAGGCTGAGGCAGGAGAAAG...........................................................................................................................................................................................................................303.000.00-2.00-----1.00-------------------
....................................................................ATTTCACCACTGCACTCCAGCCGGGC............................................................................................................................................................263.000.003.00--------------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTTTG...................................................................212.000.00--1.001.00-----------------------
.......................................................................TCACCACTGCACTCCAGCCGGGC............................................................................................................................................................232.000.00-2.00-------------------------
.....................CAGGAGAATCGCTTGAACCCGGTC.............................................................................................................................................................................................................242.000.00-------------2.00-------------
..................................................................................................................................................AAAAGAATAACTACACTAT.....................................................................................192.000.00---------------2.00-----------
..................................................................................................................................................................CATCATTTTCTTTTTTTAAG....................................................................202.000.00--2.00------------------------
...............................................................................................................................................................CAACATCATTTTCTTTTTTTTG.....................................................................222.000.00----2.00----------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTTG....................................................................201.000.00---1.00-----------------------
...CTACTCAGGAGGCTGAGGCAGGAGAATCGCTA.......................................................................................................................................................................................................................321.000.00----------1.00----------------
.................................................................................................................................................................ACATCATTTTCTTTTTTTTTTTG..................................................................231.000.00-----1.00---------------------
...........................................................TGAGCCGAGATTTCAC...............................................................................................................................................................................1601.001.00----------1.00----------------
.......................................................................................................................................................................TTTTCTTTTTTTTCTCCTCTAG.............................................................221.000.00----1.00----------------------
............................................................................................................................................................................TTTTTTTTCTCCTTGGACGGA.........................................................211.000.00-1.00-------------------------
.......................................................................TCACCACTGCACTCCAGCCGTGC............................................................................................................................................................231.000.001.00--------------------------
...............................................................................................................................................................CAACATCATTTTCTTTTTTTG......................................................................211.000.00---1.00-----------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTTTTA..................................................................221.000.00---1.00-----------------------
........CAGGAGGCTGAGGCAGGAGAATCGCTTGG.....................................................................................................................................................................................................................291.000.00-----------1.00---------------
................TGAGGCAGGAGAATCGCTTGAACCCGTTT.............................................................................................................................................................................................................291.000.00----------------------1.00----
...................................................................................................................................................................ATCATTTTCTTTTTTTTCTGTTG................................................................231.000.001.00--------------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTAAG...................................................................211.000.00-----1.00---------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTTCTG..................................................................221.000.00--1.00------------------------
...................................GAACCCGGGAGGCGTAGGTTGCAGTGA............................................................................................................................................................................................2701.001.00----------1.00----------------
.......................................................................TCACCACTGCACTCCAGCCGAGC............................................................................................................................................................231.000.001.00--------------------------
........................................................................................................................................................................TTTCTTTTTTTTCTCCTTTTAG............................................................221.000.00-----1.00---------------------
....................................................................................................................................................................TCATTTTCTTTTTTTTCCCTG.................................................................211.000.00----1.00----------------------
....................................................................................................................................................................TCATTTTCTTTTTTTTCTAGC.................................................................211.000.00-1.00-------------------------
......................................................................................................................................................................ATTTTCTTTTTTTTCTCTTCC...............................................................211.000.001.00--------------------------
......................................................................................................................................................................ATTTTCTTTTTTTTCTCCTAG...............................................................211.000.00--1.00------------------------
.....................CAGGAGAATCGCTTGAACCCGTTT.............................................................................................................................................................................................................241.000.00---------------------1.00-----
......................................................................................................................................................................ATTTTCTTTTTTTTCGGC..................................................................181.000.00-1.00-------------------------
......................AGGAGAATCGCTTGAACCCGGT..............................................................................................................................................................................................................221.000.00-------------------1.00-------
...........................................................TGAGCCGAGATTTCACCCTTG..........................................................................................................................................................................211.000.00------------------1.00--------
..............................................................................................................................................................ACAACATCATTTTCTTTTTTTCTG....................................................................241.000.00---1.00-----------------------
...............................................................................................................................................................CAACATCATTTTCTTTTTCTTG.....................................................................221.000.00----1.00----------------------
.......................................................................................................................................................................TTTTCTTTTTTTTCTCCTTCTTG............................................................231.000.001.00--------------------------
......................................................................................................................................................................ATTTTCTTTTTTTTCTCG..................................................................181.000.00----1.00----------------------
.......................................................................TCACCACTGCACTCCAGCCTGGGGACC........................................................................................................................................................271.000.00---------1.00-----------------
......................AGGAGAATCGCTTGAACCCGGGTAA...........................................................................................................................................................................................................251.000.00------------------------1.00--
.....................................................................................................................................................................CATTTTCTTTTTTTTCTCTTTG...............................................................221.000.00-----1.00---------------------
............................................................................................................................................................................TTTTTTTTCTCCTTGGCGGG..........................................................201.000.001.00--------------------------
....................................................................................................................................................................TCATTTTCTTTTTTTTCCG...................................................................191.000.00-----1.00---------------------
..........................................................................................................................................................................TCTTTTTTTTCTCCTTGAATT...........................................................211.000.00--------1.00------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTTAAG..................................................................221.000.00----1.00----------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTTTA...................................................................211.000.00---1.00-----------------------
..........................................................................................................................AAATAAATAAATAAAATAAAAAAAATC.....................................................................................................271.000.00-------1.00-------------------
........................................................................................................................................................................TTTCTTTTTTTTCTCCATCG..............................................................201.000.00------------1.00--------------
............................................................................................................................................AAAAATAAAAGAATAACTC...........................................................................................191.000.00--------1.00------------------
...............................................................................................................................................................CAACATCATTTTCTTTTTTTTTG....................................................................231.000.00---1.00-----------------------
.........AGGAGGCTGAGGCAGGAGAATCGGGC.......................................................................................................................................................................................................................261.000.00-1.00-------------------------
...................................................................................................................................................................ATCATTTTCTTTTTTTTCTCCTTTG..............................................................251.000.00-----1.00---------------------
..................................................................................................................................................................CATCATTTTCTTTTTTTTCTG...................................................................211.000.00----1.00----------------------
.................................................................................................................................................................ACATCATTTTCTTTTTTTTTG....................................................................211.000.00--1.00------------------------
........................................................................................................................................................................TTTCTTTTTTTTCTCCTCCC..............................................................201.000.001.00--------------------------

Antisense strand
CAACTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGTAGGTTGCAGTGAGCCGAGATTTCACCACTGCACTCCAGCCTGGGCGACAGTGCGAGACTCTGTCTCAAAACTAAATAAATAAATAAAATAAAAAATAAAAGAATAACTACAACATCATTTTCTTTTTTTTCTCCTTGGAAATAAAAATAGGACAACTCACTGTGAAAGAACCCAAGTTTCTTGATTTTGAAGTCAGAAAT
..........................................................................(((..(((((...((....))...)))))(((((...)))))..........................(((.(((((((................))))))).))).....)))..............................................................
..................................................................67.......................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR189786SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................................CTCCAGCCTGGGCGACAGTGCGAGACTCGC.......................................................................................................................................... 306.000.004.002.00-------------------------
......................................................................................................................................AAAATAAAAAATAAAAGAATTTCG............................................................................................ 246.000.00--4.001.001.00----------------------
...........................................................................................................................AATAAATAAATAAAATAAAAAATAAAAGAATG............................................................................................... 324.000.00--1.003.00-----------------------
.......................................................................................GCCTGGGCGACAGTGCGAGACTCTGGAG....................................................................................................................................... 282.000.002.00--------------------------
......................................................................................................................................AAAATAAAAAATAAAAGAACATG............................................................................................. 232.000.00--1.001.00-----------------------
............AGGCTGAGGCAGGAGAATCGCTTGGCT................................................................................................................................................................................................................... 272.000.002.00--------------------------
..........................................................................................................................AAATAAATAAATAAAATAAAACAAT....................................................................................................... 252.000.00--2.00------------------------
.................................................TAGGTTGCAGTGAGCCGAGATAA.................................................................................................................................................................................. 232.000.00--------------2.00------------
...................................................GGTTGCAGTGAGCCGAGATTTCTCG.............................................................................................................................................................................. 252.000.00--------2.00------------------
...........................................................................................................................AATAAATAAATAAAATAAAACTTG....................................................................................................... 241.000.00----1.00----------------------
.....................................................................................................................AAACTAAATAAATAAATAAAAGAGG............................................................................................................ 251.000.00-1.00-------------------------
...................................................................................................................CAAAACTAAATAAATAAATGAG................................................................................................................. 221.000.00-1.00-------------------------
................................................................................................................................ATAAATAAAATAAAAAATAAGGC................................................................................................... 231.000.00-1.00-------------------------
..............................................................................................................................AAATAAATAAAATAAAAAATAATATG.................................................................................................. 261.000.00--1.00------------------------
..................................................................................................................................AAATAAAATAAAAAATAAAAGAG................................................................................................. 231.000.00----1.00----------------------
.....................CAGGAGAATCGCTTGAACCCGGGT............................................................................................................................................................................................................. 241.000.00---------1.00-----------------
........................................................................................CCTGGGCGACAGTGCGAGATCGG........................................................................................................................................... 231.000.001.00--------------------------
.....................................................................................................................................TAAAATAAAAAATAAAAGAAAT............................................................................................... 221.000.00---1.00-----------------------
............AGGCTGAGGCAGGAGAATCGCTTGCTT................................................................................................................................................................................................................... 271.000.00-----------------------1.00---
..........................................................................CCACTGCACTCCAGCCTGGGCGACAGTGCCA................................................................................................................................................. 311.000.00-1.00-------------------------
...............................................................................GCACTCCAGCCTGGGCGACAGTGGCA................................................................................................................................................. 261.000.00-1.00-------------------------
.....................................................................................................................................TAAAATAAAAAATAAAAGAATG............................................................................................... 221.000.00--1.00------------------------
...................................................GAAATCTCGGCTCACTGCAACC................................................................................................................................................................................. 2201.001.00--------------------1.00------
......................................................................TTCACCACTGCACTCCAGCCTGGCA........................................................................................................................................................... 251.000.00-1.00-------------------------
..........................................................................................................................AAATAAATAAATAAAATACCG........................................................................................................... 211.000.00-----1.00---------------------
......................................................................................................................................AAAATAAAAAATAAAAGAACTTG............................................................................................. 231.000.00--1.00------------------------
..................................................................................CTCCAGCCTGGGCGACAGTGCGAGC............................................................................................................................................... 251.000.001.00--------------------------
.................................................TAGGTTGCAGTGAGCCGAGATAAG................................................................................................................................................................................. 241.000.00-------------------------1.00-
......................................................................................................................AACTAAATAAATAAATAAAATAGAA........................................................................................................... 251.000.001.00--------------------------
.................................................................................................................................TAAATAAAATAAAAAATAAAAGAATT............................................................................................... 261.000.00-------1.00-------------------
....................................................................ATTTCACCACTGCACTCCAGCCTA.............................................................................................................................................................. 241.000.00--------------------------1.00
........................................................................................................................................................ATAACTACAACATCAACTG............................................................................... 191.000.00----------------1.00----------
............................................................................................................................ATAAATAAATAAAATAAAACTC........................................................................................................ 221.000.00-1.00-------------------------
......................................................................TTCACCACTGCACTCCAGCCTGGGGG.......................................................................................................................................................... 261.000.00---------1.00-----------------
......CTCAGGAGGCTGAGGCAGGAGAATCGCTTGCT.................................................................................................................................................................................................................... 321.000.00-1.00-------------------------
.................................................TAGGTTGCAGTGAGCCGAGAGCAC................................................................................................................................................................................. 241.000.001.00--------------------------
............AGGCTGAGGCAGGAGAATCGCTGGTG.................................................................................................................................................................................................................... 261.000.001.00--------------------------
....................................................................................CCAGCCTGGGCGACAGTGCGAGACTGGGG......................................................................................................................................... 291.000.001.00--------------------------
.....................CAGGAGAATCGCTTGAACCCGA............................................................................................................................................................................................................... 221.000.00-----------------1.00---------
.............................................................................................................................TAAATAAATAAAATAAAAAATAAACC................................................................................................... 261.000.001.00--------------------------
......................................CCCGGGAGGCGTAGGTTGCAGTGAGCCGAGTC.................................................................................................................................................................................... 321.000.00-1.00-------------------------
.......................................................................TCACCACTGCACTCCAGCCTGGGCGACC....................................................................................................................................................... 281.000.001.00--------------------------
......................................................................................................................................AAAATAAAAAATAAAAGAATAATTAG.......................................................................................... 261.000.00---1.00-----------------------
..........................................................................................................................................TAAAAAATAAAAGAATAGC............................................................................................. 191.000.001.00--------------------------
.................................................................................ACTCCAGCCTGGGCGACAGTGCGAGACC............................................................................................................................................. 281.000.001.00--------------------------
......................................CCCGGGAGGCGTAGGTTGCAGTGAGCCGACTC.................................................................................................................................................................................... 321.000.001.00--------------------------
..............................................................................................................................AAATAAATAAAATAAAAAATAAAATATC................................................................................................ 281.000.001.00--------------------------
.............................................................................................................................TAAATAAATAAAATAAAAAATAAACATT................................................................................................. 281.000.001.00--------------------------
.....................................................................................................................................TAAAATAAAAAATAAAAGAAATG.............................................................................................. 231.000.00---1.00-----------------------
..............................................................................................................................AAATAAATAAAATAAAAAATAAAAGTTTG............................................................................................... 291.000.00---1.00-----------------------
..................................................................................CTCCAGCCTGGGCGACAGTGCGAGACTCTGGC........................................................................................................................................ 321.000.00-1.00-------------------------
..........................................................................................................................AAATAAATAAATAAAATAAAAACGGG...................................................................................................... 261.000.001.00--------------------------
.....................................................................................................................................TAAAATAAAAAATAAAAGAATT............................................................................................... 221.000.00--1.00------------------------
......................................CCCGGGAGGCGTAGGTTGCAGTGAGCCGAGAG.................................................................................................................................................................................... 321.000.00-1.00-------------------------
..............................................................................................................................AAATAAATAAAATAAAAAATCTAG.................................................................................................... 241.000.00-----1.00---------------------
.....................................................................................................................................TAAAATAAAAAATAAAAGATTG............................................................................................... 221.000.00--1.00------------------------
......................................................................TTCACCACTGCACTCCAGCCTGGGGAA......................................................................................................................................................... 271.000.00---------1.00-----------------
.........................................................................................................................TAAATAAATAAATAAAATAAAAAATAAAAGATTTG.............................................................................................. 351.000.00-----1.00---------------------
......................................................................................................................AACTAAATAAATAAATAAAATG.............................................................................................................. 221.000.00-------1.00-------------------
......................................................................................................................................AAAATAAAAAATAAAAGAATAATTTG.......................................................................................... 261.000.00---1.00-----------------------
.............................................................................................................................TAAATAAATAAAATAAAAAATAAAACC.................................................................................................. 271.000.001.00--------------------------
...........................................................................................................................AATAAATAAATAAAATAACTAG......................................................................................................... 221.000.00-----1.00---------------------
..........................................................................................................................AAATAAATAAATAAAATAAAAAATAAAAGC.................................................................................................. 301.000.00----1.00----------------------
....................................................................................CCAGCCTGGGCGACAGTGCTC................................................................................................................................................. 211.000.00-1.00-------------------------
..............................................................................................................................AAATAAATAAAATAAAAAATAAAAGAAG................................................................................................ 281.000.00----1.00----------------------
.........................................GGGAGGCGTAGGTTGCAGTGAGCCGAGAAGGA................................................................................................................................................................................. 321.000.00-1.00-------------------------
...............................................................CCGAGATTTCACCACTAGC........................................................................................................................................................................ 191.000.00------------1.00--------------
............................................................................................................................ATAAATAAATAAAATAAAAAATCTTT.................................................................................................... 261.000.00-------1.00-------------------
.................GAGGCAGGAGAATCGCTTGAACCCGGGAGGGC......................................................................................................................................................................................................... 321.000.00-----------1.00---------------
........................................................................................................................TTTTTTATTTTATTTATTTATTTAG......................................................................................................... 2540.750.75----0.250.50---------------------
...................................................................................................................................AGTTATTCTTTTATTTTTTATTTTATT............................................................................................ 2720.500.500.50--------------------------
........................................................................................................................CTAAATAAATAAATAAAATAAAAAAC........................................................................................................ 260.250.000.25--------------------------
....................................................................................................................................ATTCTTTTATTTTTTATTTTAT................................................................................................ 2280.120.12----0.12----------------------