ID: uc003ihu.1_intron_3_0_chr4_140262224_f.3p
GENE: NAA15(4)
chr4:140263780-140264029+


(2)
AGO2.ip
(1)
B-CELL
(3)
BREAST
(16)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
LIVER
(2)
OTHER
(7)
SKIN
(1)
UTERUS

Sense strand
TTTTGATAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCTAATATGGAGATCTTTTAAAGGAGCACTTGCTGTTACTAAAAGCCTAAGAAAAAGTGTTTATTTTTTTCCTTTTAAAGGAAACGAGGTATCAGTTACTTCAGCTTCGACCTGCGCAGAGAGCATCATG
............................................................((((...(((..((((..(((((......)))))...(((((((........)))))))..))))..))).))))....((((((((((((.(((((......)))...))...)))))).........)))))).......................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR037938(GSM510476)
293Red. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
....................................................................................................................................................................................TTATTTTTTTCCTTTTACTTA.................................................21150.000.00144.00--6.00-----------------------------------
................GTTTCACCATGTTGGCCAGGAAAAC.................................................................................................................................................................................................................257.000.00----7.00----------------------------------
................................................................CACCCGCCTTAGCCTCC.........................................................................................................................................................................1704.004.00------4.00--------------------------------
....................................................................................................................................................................................TTATTTTTTTCCTTTTACTGA.................................................213.000.003.00--------------------------------------
..........................GTTGGCCAGGATGGTCTCGATCTCTTGAAAA.................................................................................................................................................................................................313.000.00---------3.00-----------------------------
............................TGGCCAGGATGGTCTCGATCTCTCGAG...................................................................................................................................................................................................272.000.00--2.00------------------------------------
...................................GATGGTCTCGATCTCTTGACA..................................................................................................................................................................................................212.000.00----------2.00----------------------------
.....................................................ACCTCGTGATCCACCCGCGAG................................................................................................................................................................................212.000.00-----------1.00----------1.00----------------
.....................................................................................................................................................................................TATTTTTTTCCTTTTACTTA.................................................202.000.002.00--------------------------------------
............................TGGCCAGGATGGTCTCGACCCG........................................................................................................................................................................................................222.000.00-2.00-------------------------------------
....................................ATGGTCTCGATCTCTTGACCCGGG..............................................................................................................................................................................................241.000.00-1.00-------------------------------------
...........................TTGGCCAGGATGGTCTCGATCTCAAG.....................................................................................................................................................................................................261.000.00--------------1.00------------------------
..............................................................................................................................................................................................................................AGCTTCGACCTGCGCAGAGAGCA.....2311.001.00-----------------------------------1.00---
...............................CCAGGATGGTCTCGATCTCTTGACCGCC...............................................................................................................................................................................................281.000.00--1.00------------------------------------
.....................ACCATGTTGGCCAGGAGCGG.................................................................................................................................................................................................................201.000.00-----------1.00---------------------------
.........................................................................................................................................................................................................................ACTTCAGCTTCGACCTGCGCAGAGAGCACC...301.000.00--1.00------------------------------------
....................................................................................................................................................................................TTATTTTTTTCCTTTTACTTC.................................................211.000.001.00--------------------------------------
.........................................................CGTGATCCACCCGCCTAAGA.............................................................................................................................................................................201.000.00--------------------------------1.00------
...........ACGGGGTTTCACCATGTTGGCCAGGATGGCCC...............................................................................................................................................................................................................321.000.00--1.00------------------------------------
.........................TGTTGGCCAGGATGGTCTCGACGTC........................................................................................................................................................................................................251.000.00--1.00------------------------------------
.......................CATGTTGGCCAGGATGGTGCCG.............................................................................................................................................................................................................221.000.00--1.00------------------------------------
....................................................GACCTCGTGATCCACCCGCAAT................................................................................................................................................................................221.000.00---------------------------1.00-----------
........................ATGTTGGCCAGGATGGTCTCGCTAC.........................................................................................................................................................................................................251.000.00-1.00-------------------------------------
.TTTGATAGAGACGGGGATTC.....................................................................................................................................................................................................................................201.000.00-1.00-------------------------------------
..................................................................................................................................................................................................................................TCGACCTGCGCAGAGAGCA.....1911.001.00-----1.00---------------------------------
....................................................................................................................................................................................TTATTTTTTTCCTTTTATTTA.................................................211.000.001.00--------------------------------------
........................ATGTTGGCCAGGATGGTCCGAG............................................................................................................................................................................................................221.000.00-1.00-------------------------------------
.........................TGTTGGCCAGGATGGTCTCGAGCG.........................................................................................................................................................................................................241.000.00-1.00-------------------------------------
..........................GTTGGCCAGGATGGTCTCGATCTCTTAAG...................................................................................................................................................................................................291.000.00------------------------------------1.00--
...........................TTGGCCAGGATGGTCTCGATCGC........................................................................................................................................................................................................231.000.00------------------1.00--------------------
...........................TTGGCCAGGATGGTCTCGATCGCG.......................................................................................................................................................................................................241.000.00-1.00-------------------------------------
...........................TTGGCCAGGATGGTCTCGACCCT........................................................................................................................................................................................................231.000.00--1.00------------------------------------
.....ATAGAGACGGGGTTTCACCATGTTGGCCAGGGC....................................................................................................................................................................................................................331.000.00-1.00-------------------------------------
..................................................................CCCGCCTTAGCCTCCCTCA.....................................................................................................................................................................191.000.00-----------------------------1.00---------
.........................TGTTGGCCAGGATGGTCTCGACCCT........................................................................................................................................................................................................251.000.00--1.00------------------------------------
.....................ACCATGTTGGCCAGGATGGATA...............................................................................................................................................................................................................221.000.00----------------------------------1.00----
........................................................................................................................................................................................................................TACTTCAGCTTCGACCTGCGCAGAG.........2511.001.00-------1.00-------------------------------
.....ATAGAGACGGGGTTTCACCATGTAGCA..........................................................................................................................................................................................................................271.000.00-1.00-------------------------------------
.....................ACCATGTTGGCCAGGATGGTCTCGACCTG........................................................................................................................................................................................................291.000.00-1.00-------------------------------------
.................................................CTTGACCTCGTGATCCACCCGCACCG...............................................................................................................................................................................261.000.00-1.00-------------------------------------
.........................TGTTGGCCAGGATGGTCTCGAGAG.........................................................................................................................................................................................................241.000.00------------1.00--------------------------
.............................GGCCAGGATGGTCTCGATCTCTTGAAATA................................................................................................................................................................................................291.000.00--------------------------------------1.00
...........ACGGGGTTTCACCATGTTGGCCAGGATGGCCCG..............................................................................................................................................................................................................331.000.00--1.00------------------------------------
.....ATAGAGACGGGGTTTCATTT.................................................................................................................................................................................................................................201.000.00---------------------------------1.00-----
.........................TGTTGGCCAGGATGGTAGAG.............................................................................................................................................................................................................201.000.00-----1.00---------------------------------
....................................................................................................................................................................................................................CAGTTACTTCAGCTTCGACCTGCGCAGAGAG.......3111.001.00--------------------1.00------------------
.......................................................................................................................................................................................................................TTACTTCAGCTTCGACCTGCGCAGAGAGCATC...3211.001.00-1.00-------------------------------------
...........................TTGGCCAGGATGGTCTCGATCCCAG......................................................................................................................................................................................................251.000.00--1.00------------------------------------
..............................................................................................................................................................................................................................AGCTTCGACCTGCGCAGAGAGCATC...2511.001.00-1.00-------------------------------------
.TTTGATAGAGACGGGGGTTC.....................................................................................................................................................................................................................................201.000.00--1.00------------------------------------

Antisense strand
TTTTGATAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCTAATATGGAGATCTTTTAAAGGAGCACTTGCTGTTACTAAAAGCCTAAGAAAAAGTGTTTATTTTTTTCCTTTTAAAGGAAACGAGGTATCAGTTACTTCAGCTTCGACCTGCGCAGAGAGCATCATG
............................................................((((...(((..((((..(((((......)))))...(((((((........)))))))..))))..))).))))....((((((((((((.(((((......)))...))...)))))).........)))))).......................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR037938(GSM510476)
293Red. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................TGTTGGCCAGGATGGTCTCGATGTG........................................................................................................................................................................................................ 253.000.00--3.00------------------------------------
.TTTGATAGAGACGGGGTTTCACCATGTTGG........................................................................................................................................................................................................................... 302.000.00-2.00-------------------------------------
.........................TGTTGGCCAGGATGGTCTCGATCTGTG...................................................................................................................................................................................................... 272.000.00-2.00-------------------------------------
...........................TTGGCCAGGATGGTCTCGGCTG......................................................................................................................................................................................................... 222.000.00-2.00-------------------------------------
..........................GTTGGCCAGGATGGTCTCGATTGTG....................................................................................................................................................................................................... 252.000.00--2.00------------------------------------
............CGGGGTTTCACCATGTTGGCCAAAG..................................................................................................................................................................................................................... 251.000.00-----1.00---------------------------------
........................ATGTTGGCCAGGATGGTCTCGATAC......................................................................................................................................................................................................... 251.000.00--------1.00------------------------------
...............................................................CCACCCGCCTTAGCCTCCCAAAGTTGGA............................................................................................................................................................... 281.000.00-1.00-------------------------------------
.....CATGGTGAAACCCCGTCTCTAT............................................................................................................................................................................................................................... 2201.001.00-------------------------1.00-------------
.....CAACATGGTGAAACCCCGTCTCTAT............................................................................................................................................................................................................................ 2501.001.00-----------------------1.00---------------
..........................GTTGGCCAGGATGGTCTTGCG........................................................................................................................................................................................................... 211.000.00--1.00------------------------------------
................................CAGGATGGTCTCGATCTCCCC..................................................................................................................................................................................................... 211.000.00-1.00-------------------------------------
......................CCATGTTGGCCAGGATGGTCTCGATCGT........................................................................................................................................................................................................ 281.000.00--1.00------------------------------------
...................................................TGACCTCGTGATCCACCG..................................................................................................................................................................................... 181.000.00---------------1.00-----------------------
..............GGGTTTCACCATGTTGGCCAGGAGC................................................................................................................................................................................................................... 251.000.00--1.00------------------------------------
.............................................................................................................................................................................AAAGTGTTTATTTTTCAG........................................................... 181.000.00-------------1.00-------------------------
..........................GTTGGCCAGGATGGTCTCGATCTCTGTGT................................................................................................................................................................................................... 291.000.00--1.00------------------------------------
...................................................................CCGCCTTAGCCTCCCAAAGTGCTTATG............................................................................................................................................................ 271.000.00-1.00-------------------------------------
...................AGAGATCGAGACCATCCTGGCCAACATGGTGA....................................................................................................................................................................................................... 3201.001.00-------1.00-------------------------------
..................................GGATGGTCTCGATCTCTGTGC................................................................................................................................................................................................... 211.000.00------------1.00--------------------------
..........GACGGGGTTTCACCATGTTGGCCAGGACGT.................................................................................................................................................................................................................. 301.000.00-1.00-------------------------------------
.....................................................ACCTCGTGATCCACCCGCCTTAAT............................................................................................................................................................................. 241.000.00-----1.00---------------------------------
..........................GTTGGCCAGGATGGTCTCGATCTCTTGGCG.................................................................................................................................................................................................. 301.000.00-1.00-------------------------------------
....................................ATGGTCTCGATCTCTAA..................................................................................................................................................................................................... 171.000.00------------------------------1.00--------
..................................................................CCCGCCTTAGCCTCCCAAAGTGCTGGGTG........................................................................................................................................................... 291.000.00---1.00-----------------------------------
...................................GATGGTCTCGATCTCTGG..................................................................................................................................................................................................... 181.000.00-1.00-------------------------------------
......................CCATGTTGGCCAGGATGGTCTCGATCTCC....................................................................................................................................................................................................... 291.000.00-1.00-------------------------------------
.........................TGTTGGCCAGGATGGTCTGCAG........................................................................................................................................................................................................... 221.000.00-1.00-------------------------------------
...............................................CTCTTGACCTCGTGATCCACCGCCG.................................................................................................................................................................................. 251.000.00-1.00-------------------------------------
...............................................................................................................................................................................................................GGTATCAGTTACTTCACTGC....................... 201.000.00-----------------1.00---------------------
........................................................................................................GAGCCACTGCGCCTGGCCTGAG............................................................................................................................ 221.000.00-------------------------------1.00-------
..........................GTTGGCCAGGATGGTCTCGATTAC........................................................................................................................................................................................................ 241.000.00--------1.00------------------------------
.......................................GTCTCGATCTCTTGACCTACG.............................................................................................................................................................................................. 211.000.00------------------------1.00--------------
...........................TTGGCCAGGATGGTCTCGATGAC........................................................................................................................................................................................................ 231.000.00-1.00-------------------------------------
......................CCATGTTGGCCAGGATGGTCTCGATCTCCA...................................................................................................................................................................................................... 301.000.00-1.00-------------------------------------
..............................................TCTCTTGACCTCGTGATCCACCCGCCTGG............................................................................................................................................................................... 291.000.00--1.00------------------------------------
..................................GGATGGTCTCGATCTCGCC..................................................................................................................................................................................................... 191.000.00---------------------1.00-----------------
...................................................................................................GGCGTGAGCCACTGCGCCTGGCCTAATC........................................................................................................................... 281.000.00--1.00------------------------------------
..........................................................GTGATCCACCCGCCTTAGCCTCCCATCG.................................................................................................................................................................... 281.000.00--1.00------------------------------------
......................CCATGTTGGCCAGGATGGTGG............................................................................................................................................................................................................... 211.000.00-------1.00-------------------------------
..................................GGATGGTCTCGATCTCTGGCG................................................................................................................................................................................................... 211.000.00-1.00-------------------------------------
.........................TGTTGGCCAGGATGGTCTCGATCTCTCGCC................................................................................................................................................................................................... 301.000.00--1.00------------------------------------
...............................................CTCTTGACCTCGTGATCCACTGG.................................................................................................................................................................................... 231.000.00-1.00-------------------------------------
.........................................CTCGATCTCTTGACCTCCG.............................................................................................................................................................................................. 191.000.00----------------1.00----------------------
...........ACGGGGTTTCACCATGTTGGCCAGGATGAA................................................................................................................................................................................................................. 301.000.00-------------------------------------1.00-
....................................................................ACTTTGGGAGGCTAAGGCG................................................................................................................................................................... 1901.001.00----------------------------1.00----------
.................................AGGATGGTCTCGATCTCTTCCGA.................................................................................................................................................................................................. 231.000.00-------------------1.00-------------------
.....................................................ACCTCGTGATCCACCCGCCTTAT.............................................................................................................................................................................. 231.000.00--------1.00------------------------------
.......................................................CTCGTGATCCACCCGCCTTAA.............................................................................................................................................................................. 211.000.00--------------------------1.00------------
...............................................GCTAAGGCGGGTGGATCACGAGGTCAAGAG............................................................................................................................................................................. 3020.500.500.50--------------------------------------