ID: uc003icu.3_intron_8_0_chr4_120187489_f.5p
GENE: (9)
chr4:120187439-120187688+


(1)
AGO2.ip
(1)
BRAIN
(9)
BREAST
(7)
CELL-LINE
(8)
CERVIX
(4)
HEART
(1)
HELA
(1)
LIVER
(6)
OTHER
(4)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TTTCCGTTGCTGTTAGATAATACCTTGAAGTGGGATTTCTGGGTTGTGTGGTAAGTGTCTGTTTAACTTTACAAGAAACTGTCAAATTGATTTCCAAAGTGGTTATACCAATTTGCATTTTATGAGAGCAATGTATGAGAGTTCCTGTTGTTCCACATTCTCAGCAGCACTTCGTGTTGGTATTCTTTTTAATGTTAGCCCTTCTCGTGTATGTATAATATTATCTCACTGTGGTTTTCATTTGCATTTC
....................................................(((((.(((((........((.((((.((.(((((((((..((.....))..))..))))))))))))).)).(((((((..((....))....))))))).........))))))))))..............................................................................
..................................................51....................................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040011(GSM532896)
G529T. (cervix)
SRR343334SRR189783SRR040012(GSM532897)
G648N. (cervix)
SRR189787TAX577740(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189786SRR040024(GSM532909)
G613N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040016(GSM532901)
G645N. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTG.....................................................................2034.000.0028.001.00-1.00--1.00-----------1.00--------1.00--1.00-----------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTGA....................................................................2134.000.0011.003.00-3.003.001.00-2.002.00-1.00-1.001.00--1.00--1.00---1.00-----1.00-----1.001.00-----
.....................................................AGTGTCTGTTTAACTCTG...................................................................................................................................................................................186.000.00--------------2.001.00---------------1.00-1.001.00-------
.................................................................................................................................................................CAGCAGCACTTCGTGTGTTG.....................................................................204.000.004.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTTA....................................................................214.000.002.00------1.00-----------------1.00----------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTT.....................................................................204.000.004.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTCGA....................................................................213.000.002.00-------1.00---------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTGG.....................................................................203.000.003.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTT......................................................................192.000.002.00-----------------------------------------
............................AGTGGGATTTCTGGGTTGTGTGAT......................................................................................................................................................................................................242.000.00-----------2.00------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTCTTG.....................................................................202.000.002.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTGG....................................................................212.000.00-1.00--------1.00-------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTCTG.....................................................................202.000.002.00-----------------------------------------
..................................................................................................................................................................AGCAGCACTTCGTGTTTTG.....................................................................191.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTTT....................................................................211.000.00------1.00-----------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTTG....................................................................211.000.00------1.00-----------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTCTGA....................................................................211.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTCA....................................................................211.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTCCAG.....................................................................201.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTTC....................................................................211.000.00-------------1.00----------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTGTGG.....................................................................201.000.001.00-----------------------------------------
.........................................................................................................................................AGAGTTCCTGTTGTTGGG...............................................................................................181.000.00------------1.00-----------------------------
...................................................TAAGTGTCTGTTTAACTCTG...................................................................................................................................................................................201.000.00----------------------1.00-------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTAA....................................................................211.000.00-1.00----------------------------------------
.............................................................................................................................................................................................................................TATCTCACTGTGGTTTTCATCTGC.....241.000.00---------1.00--------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTATTG.....................................................................201.000.00------------------------1.00-----------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTCTTA....................................................................211.000.00-----1.00------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTCTAG.....................................................................201.000.001.00-----------------------------------------
..........................GAAGTGGGATTTCTGGGTTGTGTGTAA.....................................................................................................................................................................................................271.000.00--------------------1.00---------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTGTC.....................................................................2011.001.001.00-----------------------------------------
............................AGTGGGATTTCTGGGTTGTG..........................................................................................................................................................................................................2011.001.00---------------------1.00--------------------
..............................................................................................................................................................................................................................ATCTCACTGTGGTTTTTTGC........201.000.00----------------------------1.00-------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTGTG....................................................................211.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTGC....................................................................211.000.00----1.00-------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTGGGG....................................................................211.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTGTG.....................................................................2011.001.001.00-----------------------------------------
............................AGTGGGATTTCTGGGATT............................................................................................................................................................................................................181.000.00---------1.00--------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTTA.....................................................................201.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTTGGA....................................................................211.000.001.00-----------------------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTATAA....................................................................211.000.00--------------------------------1.00---------
.................................................................................................................................................................CAGCAGCACTTCGTGATTG......................................................................191.000.001.00-----------------------------------------
.........................................................................................................................................................................................................................................GTTTTCATTTGCATTTTCGT201.000.00-------------------------------------1.00----
....................................................................................................................................................................................................................................CTGTGGTTTTCATTTGCCACT.211.000.00--------------------------1.00---------------
.............................................................................................................................................................TTCTCAGCAGCACTTCACTG.........................................................................201.000.00-----------------1.00------------------------
.................................................................................................................................................................CAGCAGCACTTCGTGTTG.......................................................................1811.001.001.00-----------------------------------------
........................................................................................................................................................................................CTTTTTAATGTTAGCCC.................................................1730.330.33---------------0.33--------------------------
..................................................................................................................................ATGTATGAGAGTTCCTGTTGT...................................................................................................2140.250.25----------------------------------------0.25-
...................................TTTCTGGGTTGTGTGGTAA....................................................................................................................................................................................................1940.250.25---------------------------------------0.25--
............................................................................................................................................................................................................................TTATCTCACTGTGGTTTTCATTTGCA....2650.200.20-----------------------------------------0.20

Antisense strand
TTTCCGTTGCTGTTAGATAATACCTTGAAGTGGGATTTCTGGGTTGTGTGGTAAGTGTCTGTTTAACTTTACAAGAAACTGTCAAATTGATTTCCAAAGTGGTTATACCAATTTGCATTTTATGAGAGCAATGTATGAGAGTTCCTGTTGTTCCACATTCTCAGCAGCACTTCGTGTTGGTATTCTTTTTAATGTTAGCCCTTCTCGTGTATGTATAATATTATCTCACTGTGGTTTTCATTTGCATTTC
....................................................(((((.(((((........((.((((.((.(((((((((..((.....))..))..))))))))))))).)).(((((((..((....))....))))))).........))))))))))..............................................................................
..................................................51....................................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040011(GSM532896)
G529T. (cervix)
SRR343334SRR189783SRR040012(GSM532897)
G648N. (cervix)
SRR189787TAX577740(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189786SRR040024(GSM532909)
G613N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040016(GSM532901)
G645N. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
..............................................................................................................................................................................................................GTGTATGTATAATATTCTG......................... 194.000.00--4.00---------------------------------------
............................................................................................................................................GTTCCTGTTGTTCCAAG............................................................................................. 171.000.00-----1.00------------------------------------
.........................................................................................................................................................................................AGGGCTAACATTAAAAA................................................ 1730.330.33--------------------------------------0.33---