ID: uc003hse.1_intron_17_0_chr4_89772335_r.5p
GENE: FAM13A(6)
chr4:89827330-89827579-


(10)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
LIVER 		(2)
OTHER 		(1)
SKIN 		(1)
TESTES

Sense strand
TAACAAGAGGCTTAGAAAGAGACATGCCAAAACCACCTCCAAAAACCAAGGTAAACTATGTTTTCTCTGTAGGCGACCATGTGAAATCTTTAGCATGGTTCTTTGTTTTTTGTTGTTTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTTGCTTTATCGTCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGCAGTTCTCCTGCATCAGCCTCTGGG
........................................................................................((((((.(((..(((((((((................................)))))))))..............))).))))))((((....))))................................................................
........................................................................................89.................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532930(GSM532930)
G702T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925PAZD5SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................ATCGTCCAGGCTGGAGTGCAGCGGC..................................................................255.000.005.00----------------
.............................................................................................CATGGTTCTTTGTTTTTGGAA........................................................................................................................................214.000.00---4.00-------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCTC............................................................................................................263.000.002.001.00---------------
..........................................................................................................TTTTTGTTGTTTTTGTTCTGC...........................................................................................................................212.000.002.00----------------
.....................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTCG............................................................................................................252.000.00-2.00---------------
.......................................................................................................TGTTTTTTGTTGTTTTTGTTTCTTG..........................................................................................................................252.000.00-2.00---------------
.....................................................................................................TTTGTTTTTTGTTGTTTTTGTTTCTTG..........................................................................................................................272.000.002.00----------------
......................................................................................................TTGTTTTTTGTTGTTTTTGTTTCTTG..........................................................................................................................262.000.001.001.00---------------
.....................................................................................................................TTTGTTTGTTTGTTTGTTTGTCCTT............................................................................................................252.000.002.00----------------
...................................................................................................TCTTTGTTTTTTGTTGTTTTAATG...............................................................................................................................242.000.002.00----------------
...............................................................................................................................................................ATCGTCCAGGCTGGAGTGAGCG.....................................................................222.000.002.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTCCC...............................................................................................................262.000.002.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTCACT..............................................................................................................272.000.002.00----------------
..............................................................................................................................................................TATCGTCCAGGCTGGAGTGCAGTGGCCCC...............................................................292.000.002.00----------------
.........................................................................................................TTTTTTGTTGTTTTTGTTTCACT..........................................................................................................................232.000.002.00----------------
......................................................................................................................TTGTTTGTTTGTTTGTTTGTCTCG............................................................................................................242.000.001.001.00---------------
..................................................................................................TTCTTTGTTTTTTGTTGTTTTGTT................................................................................................................................242.000.002.00----------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCTT............................................................................................................262.000.00-2.00---------------
........................................................................................................GTTTTTTGTTGTTTTTGTTTCACC..........................................................................................................................242.000.002.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTCTGC............................................................................................................272.000.002.00----------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTCTTG...............................................................................................................272.000.002.00----------------
.........................................................................................................TTTTTTGTTGTTTTTGTTCTGC...........................................................................................................................222.000.00-2.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTGCTC..............................................................................................................271.000.001.00----------------
.....................................................................................................................TTTGTTTGTTTGTTTGTTTGTTTTGAGAGGAG.....................................................................................................321.000.00----------1.00------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTCCCC............................................................................................................271.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTCCTC...............................................................................................................261.000.00-1.00---------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTTGTCTCT............................................................................................................301.000.00-1.00---------------
.............................................................................................................TTGTTGTTTTTGTTTGTTTGTTTTCTC..................................................................................................................271.000.00-1.00---------------
..............................................................TTCTCTGTAGGCGACCATGTGAA.....................................................................................................................................................................2311.001.00---------1.00-------
..............................................................................................................................TTGTTTGTTTGTTTTGAGACAGA.....................................................................................................2301.001.00----1.00------------
..............................................................................................................................................................TATCGTCCAGGCTGGAGTGCAGCGGG..................................................................261.000.001.00----------------
.........................................................................................................TTTTTTGTTGTTTTTGTTTGTTTGTCTGC....................................................................................................................291.000.00-1.00---------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTTGTTCC.............................................................................................................291.000.001.00----------------
...................................................................................................................................................................TCCAGGCTGGAGTGCAGTGGCGCAGGG............................................................271.000.00-1.00---------------
................................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCTGGCTCG............................301.000.00-1.00---------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCATG............................................................................................................261.000.00-1.00---------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTTTGAGAGGA......................................................................................................321.000.00-1.00---------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTTGTCTTT............................................................................................................301.000.001.00----------------
.........................................................................................................TTTTTTGTTGTTTTTGTTTGTTTCCGG......................................................................................................................271.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCGTC...........................................................................................................281.000.00-1.00---------------
...................................................................................................................................................................................................TCACTGCAACCTCTGCCTCCTGGGTTCACGAG.......................321.000.001.00----------------
.......................................................................................................................................................................................................TGCAACCTCTGCCTCCTGGGAAGT...........................241.000.00--------------1.00--
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTCCT.................................................................................................................251.000.001.00----------------
................................................................................................................................................................TCGTCCAGGCTGGAGTGCAGTGGAGA................................................................261.000.001.00----------------
.....................................................................................................................................................................................................ACTGCAACCTCTGCCTCCTGGGACCG...........................261.000.001.00----------------
................................................................................................................................................................TCGTCCAGGCTGGAGTGAGCG.....................................................................211.000.00-1.00---------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTCGC................................................................................................................261.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTCGC...............................................................................................................261.000.001.00----------------
..............................................................................................................TGTTGTTTTTGTTTGTTTACTG......................................................................................................................221.000.00-1.00---------------
...............................................................................................................................................................ATCGTCCAGGCTGGAGTGC........................................................................1901.001.00----1.00------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCTCC...........................................................................................................271.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGCGG..................................................................................................................231.000.00-1.00---------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTTGTCTT.............................................................................................................291.000.00-1.00---------------
................................................................................................GGTTCTTTGTTTTTTGGGT.......................................................................................................................................191.000.00---------------1.00-
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTCGTT................................................................................................................251.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTGTTTTCTC..........................................................................................................311.000.001.00----------------
....AAGAGGCTTAGAAAGAGACATGCC..............................................................................................................................................................................................................................2411.001.00------------1.00----
........................................................................................................................GTTTGTTTGTTTGTTTGTTTTGAGAC........................................................................................................2601.001.00--1.00--------------
................................................................................................................................................................TCGTCCAGGCTGGAGTGCATCGG...................................................................231.000.00-1.00---------------
................................................................................................................................................................TCGTCCAGGCTGGAGTGCAGCAC...................................................................231.000.001.00----------------
...........................................................................................................................................................................................................ACCTCTGCCTCCTGGGTTCAGCTG.......................241.000.001.00----------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTCTC................................................................................................................261.000.00-1.00---------------
.....................................................................................................................TTTGTTTGTTTGTTTGTTTGTCTAC............................................................................................................251.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCCTG...........................................................................................................281.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTGGCC...............................................................................................................261.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTCTCG................................................................................................................251.000.001.00----------------
......................................................................................................................TTGTTTGTTTGTTTGTTTGTTTTGAGGAC.......................................................................................................291.000.00-1.00---------------
................................................................................................................................................................TCGTCCAGGCTGGAGTGCAGTGGGTC................................................................261.000.00-1.00---------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTTTGACTTC.......................................................................................................321.000.00-1.00---------------
...................................................................................................................................................................TCCAGGCTGGAGTGCAGTGGCGACC..............................................................251.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTCTTG...............................................................................................................261.000.001.00----------------
...............................................................................................................................................................ATCGTCCAGGCTGGAGTGCAGCA....................................................................231.000.00-1.00---------------
.....................................................................................................................................................................................................ACTGCAACCTCTGCCTCCTGGGTTCT...........................261.000.00-------1.00---------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCCGT............................................................................................................261.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTCACT...............................................................................................................261.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTCCT.................................................................................................................241.000.001.00----------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCCTG...........................................................................................................271.000.001.00----------------
......................................................................................................TTGTTTTTTGTTGTTTTTGTTTTCT...........................................................................................................................251.000.001.00----------------
...........................................................................................................................................................................................ATCTCAGCTCACTGCAACCTCTGCCTCCTCCG...............................321.000.001.00----------------
......................................................................................................TTGTTTTTTGTTGTTTCGA.................................................................................................................................191.000.001.00----------------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTTTCGAA..............................................................................................................281.000.001.00----------------
..............................................................................................................................................................................................TCAGCTCACTGCAACCTCTGCCTCCTGGTCC.............................311.000.00-1.00---------------
................................................................................................................................................................TCGTCCAGGCTGGAGTGCAGTGGAAC................................................................261.000.00-1.00---------------
......................................................................................................TTGTTTTTTGTTGTTTTTGTTTTTCG..........................................................................................................................261.000.001.00----------------
....................................................................................................................................................................................................................................TTCTCCTGCATCAGCCTCTAC.211.000.00--------1.00--------
................................................................................................................TTGTTTTTGTTTGTTTGTTTGTCTCG................................................................................................................261.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCTCT...........................................................................................................281.000.00-1.00---------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTCTCG............................................................................................................261.000.001.00----------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCGTC...........................................................................................................271.000.00-1.00---------------
.............................................................................................................TTGTTGTTTTTGTTTGTTTGTTTGGAG..................................................................................................................271.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTTTGATTTG.......................................................................................................321.000.00----------1.00------
...............................................................................................................................................................ATCGTCCAGGCTGGAGTGCAGTGGCGCCTTC............................................................311.000.001.00----------------
....................................................................................................................TTTTGTTTGTTTGTTTGTTTGTTCTCG...........................................................................................................271.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCGGC...........................................................................................................281.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTGTCGAG............................................................................................................291.000.001.00----------------
................................................................................................................TTGTTTTTGTTTGTTTGTTGCG....................................................................................................................221.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCCGG...........................................................................................................281.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTCTTC................................................................................................................251.000.00-1.00---------------
..................................................................................................................GTTTTTGTTTGTTTGTTTGTTTCGAC..............................................................................................................261.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGCTGG.................................................................................................................241.000.00-1.00---------------
.....................................................................................................TTTGTTTTTTGTTGTTTTTGCTC..............................................................................................................................231.000.001.00----------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCCG............................................................................................................271.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTCGGA...............................................................................................................261.000.00-1.00---------------
.....................ACATGCCAAAACCACCTCCAAAAAC............................................................................................................................................................................................................2511.001.00---------1.00-------
................................................................................................................................................................TCGTCCAGGCTGGAGTGACCG.....................................................................211.000.001.00----------------
.............................................................................................................TTGTTGTTTTTGTTTGTTTGTTTCCT...................................................................................................................261.000.001.00----------------
..............................................................................................................TGTTGTTTTTGTTTGTTTGTTTCCT...................................................................................................................251.000.001.00----------------
...............................................................................................TGGTTCTTTGTTTTTTGTTTTGG....................................................................................................................................231.000.00-1.00---------------
..............................................................................................................................................................TATCGTCCAGGCTGGAGTGCAGTGGCACAG..............................................................301.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTGTATCT............................................................................................................291.000.00-1.00---------------
..................................................................................................................GTTTTTGTTTGTTTGTTTGCTCG.................................................................................................................231.000.001.00----------------
...........................................................................................................TTTTGTTGTTTTTGTTTGTTTGTTCC.....................................................................................................................261.000.00-1.00---------------
...................................................................................................................TTTTTGTTTGTTTGTTTGTTTGTTCCC............................................................................................................271.000.00-1.00---------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTTGTTTTCACT.........................................................................................................321.000.001.00----------------
.................................................................................................................TGTTTTTGTTTGTTTGTTTGTTCTGC...............................................................................................................261.000.001.00----------------

Antisense strand
TAACAAGAGGCTTAGAAAGAGACATGCCAAAACCACCTCCAAAAACCAAGGTAAACTATGTTTTCTCTGTAGGCGACCATGTGAAATCTTTAGCATGGTTCTTTGTTTTTTGTTGTTTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTTGCTTTATCGTCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGCAGTTCTCCTGCATCAGCCTCTGGG
........................................................................................((((((.(((..(((((((((................................)))))))))..............))).))))))((((....))))................................................................
........................................................................................89.................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532930(GSM532930)
G702T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925PAZD5SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGAGC......................................................... 264.000.002.002.00---------------
.......................................................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGTGC......................................................... 262.000.002.00----------------
....................................................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCAT.......................... 282.000.00----1.00-1.00----------
............................................................................................................................................................................................................CCTCTGCCTCCTGGGTTCAAAT........................ 221.000.00--1.00--------------
....................................................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCT........................... 271.000.00--1.00--------------
..................................................................................................................................................................................................................CCTCCTGGGTTCAGGCAGTTGGGA................ 241.000.001.00----------------
....................................................................................................................................................................................................CACTGCAACCTCTGCCTCCTGGGTTCTC.......................... 281.000.00-1.00---------------
................................................................................................................................GTTTGTTTGTTTTGAGACAGAGTCTTGCCTG........................................................................................... 311.000.00----------------1.00
............................................................................................................................................................................................................CCTCTGCCTCCTGGGTTCAGGCAGTG.................... 261.000.001.00----------------
.....................................................................................................TTTGTTTTTTGTTGTTTTTGTTTAACA.......................................................................................................................... 271.000.00-----1.00-----------
..............................................................................................................................................................................GTGCAGTGGCGCAATCTCAGCTCGC................................................... 251.000.00-1.00---------------
.....................................................................................................................................................................................................CTGAACCCAGGAGGCAGAGGTTGCAGT.......................... 2701.001.00-------1.00---------
......................................................................................................................................................................AGGCTGGAGTGCAGTGGCGCAATCTCCGC....................................................... 291.000.00-1.00---------------
..................................................................................................................................................................GTCCAGGCTGGAGTGCAGTGGCGCAATCTCGG........................................................ 321.000.00-1.00---------------
.......................................................................................................................................................................................CGCAATCTCAGCTCACTGCAG.............................................. 211.000.00--1.00--------------
.......................................................................................................................................................................GGCTGGAGTGCAGTGGCGCAAGAGC.......................................................... 251.000.00-1.00---------------
.....................................................................................................................................................................................................ACTGCAACCTCTGCCTCCTGTTT.............................. 231.000.00--------1.00--------
....................................................................................................................................................................................................................TCCTGGGTTCAGGCAGTTCTCCTAG............. 251.000.00-1.00---------------
................................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCG.................................. 241.000.00-1.00---------------
............................................................................................................................................................................................................CCTCTGCCTCCTGGGTTCAGGCAGTTCTCCCTGC............ 341.000.00-1.00---------------
.......................................................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGAAC......................................................... 261.000.001.00----------------
.......................................................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGGTC......................................................... 261.000.001.00----------------
.......................................................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGGAC......................................................... 261.000.001.00----------------
................................................................................................................................................................................................................CCTGAACCCAGGAGGCA......................... 1701.001.00------1.00----------
............................................................................................................................................................................................................CCTCTGCCTCCTGGGTTCAGGCAGTTATGC................ 301.000.00-1.00---------------
......................................................................................................TTGTTTTTTGTTGTTTTTGTTTGTTGA......................................................................................................................... 271.000.00-----1.00-----------
...................................................................................................................................................................................................................CAGGAGAACTGCCTGAACCCAGGAG.............. 2501.001.00--1.00--------------
..........................................................................................................................................................................................................AACCTCTGCCTCCTGGGTTCAGGCAGTCC................... 291.000.00-1.00---------------
......................................................................................................................................................................................CAGAGGTTGCAGTGAGCTGAGATTGCGC........................................ 2801.001.00-----------1.00-----
....................................................................................................................................................................................................ACTGCCTGAACCCAGGAGGCAGAGGTTGCAGTG..................... 3380.250.250.25----------------