ID: uc003gni.1_intron_5_0_chr4_15054209_f.3p
GENE: (6)
chr4:15055552-15055801+


(1)
AGO2.ip 		(3)
BRAIN 		(3)
BREAST 		(5)
CELL-LINE 		(2)
LIVER 		(2)
OTHER 		(11)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGAATTTATTTTGACAAAAATTGTTAATCTTGACATATTATTTTAATAAGTATATTAGACATATTCCCAGTGTTTATATTCTAATTTATCTTAAGGTATTTGGCACTTTTAAATGTTAAATCTTCATAGTAACAGTACAGAATTTCTTAGAACGAATCACTGAAACTAATTTCTAATGTGTATTATTGTACTTTCTTAAGATGAAATAACTGCTAGCTTCAGAAGATTTGGGCCTTTGGTAGTAGATTGG
.............................................................................................(((.((((((((........)))))))))))..((((..((((...((..(((.......)))))))))..))))..................................................................................
..........................................................................75.............................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR343335SRR343334SRR343336SRR189785SRR343337SRR037937(GSM510475)
293cand2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
...............................................................................TCTAATTTATCTTAAGCTAG.......................................................................................................................................................2061.000.0035.00-11.0010.001.001.003.00---------------------------
..............................................................................TTCTAATTTATCTTAAGCTAG.......................................................................................................................................................2131.000.0021.00-1.00-4.004.001.00---------------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTATA198.000.00-6.00--------1.00----------1.00------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTAT187.000.00-1.00-----2.00--1.00-----1.00------1.00------1.00---
................................................................................CTAATTTATCTTAAGCTAG.......................................................................................................................................................193.000.002.00-1.00-------------------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTATT192.000.00-2.00--------------------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTTTG192.000.00-2.00--------------------------------
...............................................................................................................................................................................................................................AGATTTGGGCCTTTGGTAGTAGAT...2412.002.00------------2.00---------------------
.........................................................................................................................................................................................................TGAAATAACTGCTAGCTTCAGAAGA........................2512.002.00--------------2.00-------------------
....................................................................................................................................................................................................................CTAGCTTCAGAAGATTTGGGCCTTTGG...........2712.002.00---------2.00------------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTAAA191.000.00-----------------1.00----------------
...................................................................................................................................................................................................................................TTGGGCCTTTGGTAGTAGA....1911.001.00--------1.00-------------------------
.........................................................................................................................................CAGAATTTCTTAGAACGAATCACTTC.......................................................................................261.000.00-----------1.00----------------------
...............................................................................................................................................TTCTTAGAACGAATCACTGAAAC....................................................................................2311.001.00-------------------------1.00--------
.........................................................................................................................CTTCATAGTAACAGTACAGAATTTCTT......................................................................................................2711.001.00------------------1.00---------------
.................................................................................................................................TAACAGTACAGAATTATTG......................................................................................................191.000.00--------------------1.00-------------
........................................................................................................................................................................................................ATGAAATAACTGCTAGCTTCAGAAG.........................2511.001.00-----------------------------1.00----
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGGCA181.000.00--------1.00-------------------------
...............................................................................................................................AGTAACAGTACAGAATTTCTTAGAACGAAT.............................................................................................3011.001.00------------------------1.00---------
............................................................................................................................................................................................................................AGAAGATTTGGGCCTTTGGTAGTAGATTG.2911.001.00-------------1.00--------------------
...........................................................................................................................................................................................................................CAGAAGATTTGGGCCTTTGGTAG........2311.001.00----------------------1.00-----------
..............................................................................................................................................................................................................................AAGATTTGGGCCTTTGGTAGTAGATTG.2711.001.00--------------------------1.00-------
................................................................................................................................................................................................................ACTGCTAGCTTCAGAAGA........................1811.001.00--------1.00-------------------------
............................................................................................................................................................................................................................AGAAGATTTGGGCCTTTGGTAGT.......2311.001.00-------------1.00--------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTATG191.000.00-1.00--------------------------------
..............................................................................................................................................................................................................................AAGATTTGGGCCTTTGGTAGTAGA....2411.001.00---------------1.00------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGCAT181.000.00-------1.00--------------------------
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTA171.000.00----------------------------1.00-----
..........................................................................................................................................................................................................................................TTTGGTAGTAGATTGTATC191.000.00---------------------------1.00------
..................................................................................................................................................................................................................TGCTAGCTTCAGAAGATTTGGGCCTTTGGTAG........3211.001.00-------------------1.00--------------
........................................................................................................................................................................................................................................CCTTTGGTAGTAGATT..1620.500.50---------0.50------------------------
..............................................................................................................................................................................................................................AAGATTTGGGCCTTTGGTAG........2020.500.50--------------------------------0.50-
............................................................................................................................................................................................................................AGAAGATTTGGGCCTTTG............1820.500.50-------------------------------0.50--
.......................................................................................................................................................................................................................................GCCTTTGGTAGTAGA....1550.200.20---------------0.20------------------
.......................................................................................................................................................................................................................................GCCTTTGGTAGTAGACGA.1850.200.20---------------------------------0.20

Antisense strand
TGAATTTATTTTGACAAAAATTGTTAATCTTGACATATTATTTTAATAAGTATATTAGACATATTCCCAGTGTTTATATTCTAATTTATCTTAAGGTATTTGGCACTTTTAAATGTTAAATCTTCATAGTAACAGTACAGAATTTCTTAGAACGAATCACTGAAACTAATTTCTAATGTGTATTATTGTACTTTCTTAAGATGAAATAACTGCTAGCTTCAGAAGATTTGGGCCTTTGGTAGTAGATTGG
.............................................................................................(((.((((((((........)))))))))))..((((..((((...((..(((.......)))))))))..))))..................................................................................
..........................................................................75.............................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR343335SRR343334SRR343336SRR189785SRR343337SRR037937(GSM510475)
293cand2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
...........................................TAATAAGTATATTAGACC............................................................................................................................................................................................. 181.000.00-1.00--------------------------------
.................................................................................................................................TAACAGTACAGAATTTGAT...................................................................................................... 191.000.00-----------1.00----------------------