ID: uc003fvz.3_intron_10_0_chr3_195794529_r
GENE: (8)
chr3:195794479-195794952-


(1)
AGO1.ip 		(1)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(9)
BREAST 		(11)
CELL-LINE 		(4)
HEART 		(6)
HELA 		(2)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ACCAGACTAAATTTCCCATTGTTAACGCAGAACTTTCATTCTTTGGACATGTGAGTTATTTCTTGAGTAAATCACCGTTTTGAGTTCCTTGAGTTGTTCTTGGATTCCTGTATTAGCAGAAATAGCACTGTGTCTTCCTTAACTGCTCTTTTTTCTGGGAGGGCGTTAGCAGTAAGCAAGAAGATAGATTACATTGACTTTGAGGCTTTATTATTTGTTGCTAAAAGTACTTTGTCAATAGTGCCTTGAATTTGAGAATTTCCATATGCCATGAAAACAGGAGTCACATTGTAGAGCCACTCAGATTTTTGAGGCTTCAAGTTGGTAAACTAAGGTTGGGCTGCAGCCTTATACCAAACCTGAATCTTACAGAGAAGTTTTGAGGAAGTATGTGATGGAGTGAATTGCTCTTTTGTTTTCCTAGGCTCATCTGGGGACAGGTGACCCTTACACACCTGGATTCCCTTCCTTCAA
................................................................................................................................................................................................................................................................................((((((((..(((((((....(((...)))...((((..(((((((...((((((...((((((((.....))))))))))))))..(((.......))).)))))))..))))...))))))).((((.....))))..))))))))......................................................
...............................................................................................................................................................................................................................................................................272.....................................................................................................................................................424................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................................................................................................................................................................................................CCTGAATCTTACAGAGAAGTTTTGAGGAAGTATGTGATGGAGTGAATTGCTCTTTTGTTTTCCTAG..................................................6617.007.00-7.00-----------------------------------------------------
....................................................................................................................................................................................................................................................................................ACAGGAGTCACATTGGTT....................................................................................................................................................................................186.000.00----------------------1.001.00-------1.001.00-----1.00------1.00---------
....................................................................................................................................................................................................................................................................................ACAGGAGTCACATTGGTTA...................................................................................................................................................................................196.000.00------------1.00---1.00-1.00---------------------1.00---1.00-----1.00----
......................................................................................................................................................................................................................................................................................................................................AAACTAAGGTTGGGCTGC..................................................................................................................................1814.004.004.00------------------------------------------------------
..........ATTTCCCATTGTTAACGCAGAACTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003.003.00------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACCTGGATTCCCTTCCTT...2313.003.00----3.00--------------------------------------------------
...........................CAGAACTTTCATTCTTTGGACATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................262.000.002.00------------------------------------------------------
.....................................................................................................................................................................................................................................................................................CAGGAGTCACATTGTAGAG..................................................................................................................................................................................1912.002.002.00------------------------------------------------------
...................................................................................................................................................................................................................................................................................AACAGGAGTCACATTGTAGA...................................................................................................................................................................................2012.002.002.00------------------------------------------------------
................................CTTTCATTCTTTGGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00----------2.00--------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................TACCAAACCTGAATCTTACAGAGAAGTTTTGAGGAAGTATGTGATGGAGTGAATTGCTCTTTTGTTTTCCTAG..................................................7312.002.00-2.00-----------------------------------------------------
..........................GCAGAACTTTCATTCTTTGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.001.00------------------------------------------------------
................CATTGTTAACGCAGAACTTTCATTCTTTGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00---------------------1.00---------------------------------
....................................................................................................................................................................................................................................................................................ACAGGAGTCACATTGGTGA...................................................................................................................................................................................191.000.00------------1.00------------------------------------------
..........................................................................................GAGTTGTTCTTGGATT................................................................................................................................................................................................................................................................................................................................................................................1611.001.00----------------------------------------------------1.00--
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACCTGGATTCCCTTCCTTCA.2311.001.00-----------1.00-------------------------------------------
.....................TTAACGCAGAACTTTCATTCTTTGGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00-----1.00-------------------------------------------------
.............................GAACTTTCATTCTTTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00----------------------------------------------------
...................................TCATTCTTTGGACATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------1.00----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................GGAAGTATGTGATGGAGTGAATTT...................................................................241.000.00------------------------------------------------1.00------
..........................................................................................................................................................................................................................................................................................................................CTTCAAGTTGGTAAACTAA.............................................................................................................................................1911.001.001.00------------------------------------------------------
....................GTTAACGCAGAACTTTCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------1.00----------------------------------------------
...............................................................................................................................................................AGGGCGTTAGCAGTAATGCG.......................................................................................................................................................................................................................................................................................................201.000.00--------------------1.00----------------------------------
.......................AACGCAGAACTTTCATTCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00------------------------------------------------
.........................CGCAGAACTTTCATTCTTTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------1.00----------------------------
..........................GCAGAACTTTCATTCTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00------------------
.................................................................................................................................................................................................................................................................................................................................................................CCAAACCTGAATCTTACAGAGAAGTTTTGAGGAAGTATGTGATGGAGTGAATTGCTCTTTTGTTTTCCTAG..................................................7111.001.00--------------1.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTATGTGATGGAGTGAAT.....................................................................2411.001.00-------1.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TGATGGAGTGAATTGCATAG..............................................................201.000.00-------------------------------------1.00-----------------
.........................................TTTGGACATGTGAGTTATTTCTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------------------------------1.00------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................TTTTGAGGAAGTATGTGATGGA...........................................................................2211.001.00-------------------1.00-----------------------------------
..........ATTTCCCATTGTTAACGCAGAACTTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00---1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................TGAAAACAGGAGTCACATTGTAGAG..................................................................................................................................................................................2511.001.00---------------------------------------1.00---------------
.............................................................................................................................................................................................................................................................................................................................................................TATACCAAACCTGAATCTTACAGAGAAGT................................................................................................2911.001.00---1.00---------------------------------------------------
..................TTGTTAACGCAGAACTTTCATTCTTTGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-------------------------------------------------1.00-----
........................ACGCAGAACTTTCATTCTTTGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00------1.00------------------------------------------------
...........................................TGGACATGTGAGTTATTTCTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................................................................................TACCAAACCTGAATCAAAA........................................................................................................191.000.00-----------------------------------1.00-------------------
..........................GCAGAACTTTCATTCTTTGGACATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-------------------------------------------1.00-----------
..............................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTATGTGATGGAGTGAATTGC..................................................................2611.001.00-------1.00-----------------------------------------------
..................................................................................................................................................................................................................................................................................AAACAGGAGTCACATTGTAG....................................................................................................................................................................................2011.001.00-----1.00-------------------------------------------------
...................................................................................................................................................................................................GACTTTGAGGCTTTATTATTTGTT...............................................................................................................................................................................................................................................................2411.001.00------------------------------------------1.00------------
........................ACGCAGAACTTTCATTCTTTGGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----------------------------------------------1.00-------
.....ACTAAATTTCCCATTGTTAACGCAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-----------------------------1.00-------------------------
..CAGACTAAATTTCCCATTGTTAACGCAGAACTTTCATTCTTTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................4511.001.00----------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................ATATGCCATGAAAACAGGAGTCACATTGTAG....................................................................................................................................................................................3111.001.00---1.00---------------------------------------------------
.....................TTAACGCAGAACTTTCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------1.00-----------------------------
......................................................GTTATTTCTTGAGTAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------1.00---------------------------------------------
...........................................................................................................................................................................................................................................................................................................................TTCAAGTTGGTAAACTAAGGC..........................................................................................................................................211.000.00-----1.00-------------------------------------------------
.......................................TCTTTGGACATGTGAGTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------------------------1.00---------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACACCTGGATTCCCTTCC.....2211.001.00-----------1.00-------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGCTCTTTTGTTTTGT.....................................................221.000.00------------------------------------------------------1.00
.....................TTAACGCAGAACTTTCATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--1.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................AAGTTTTGAGGAAGTATG..................................................................................1811.001.00---------------1.00---------------------------------------
..................................................................................................................................................................................................................................................................................................................................TGGTAAACTAAGGTTGGGCTGCAG................................................................................................................................2411.001.00-------------1.00-----------------------------------------
.................ATTGTTAACGCAGAACTTTCATTCTTTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00--1.00----------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAGTATGTGATATG...........................................................................191.000.00---------------------------1.00---------------------------
...............................ACTTTCATTCTTTGGACATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------1.00-------------------------------------
.......................................................................................................................................................................................................................................................................................................................................AACTAAGGTTGGGCTGC..................................................................................................................................1711.001.00---------1.00---------------------------------------------
...................................................................................................................................................................CGTTAGCAGTAAGCAAGAAGAT.................................................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------1.00---
...............................................................................................................................................................................................................................................................................................................................................TTGGGCTGCAGCCTTATACCAAACCTGAATCTTACAGAGAAGTTTTGAGGAAGTATGTGATGGAGTGAATTGCTCTTTTGTTTTCCTAG..................................................8911.001.00-----------------------------------------------------1.00-

Antisense strand
ACCAGACTAAATTTCCCATTGTTAACGCAGAACTTTCATTCTTTGGACATGTGAGTTATTTCTTGAGTAAATCACCGTTTTGAGTTCCTTGAGTTGTTCTTGGATTCCTGTATTAGCAGAAATAGCACTGTGTCTTCCTTAACTGCTCTTTTTTCTGGGAGGGCGTTAGCAGTAAGCAAGAAGATAGATTACATTGACTTTGAGGCTTTATTATTTGTTGCTAAAAGTACTTTGTCAATAGTGCCTTGAATTTGAGAATTTCCATATGCCATGAAAACAGGAGTCACATTGTAGAGCCACTCAGATTTTTGAGGCTTCAAGTTGGTAAACTAAGGTTGGGCTGCAGCCTTATACCAAACCTGAATCTTACAGAGAAGTTTTGAGGAAGTATGTGATGGAGTGAATTGCTCTTTTGTTTTCCTAGGCTCATCTGGGGACAGGTGACCCTTACACACCTGGATTCCCTTCCTTCAA
................................................................................................................................................................................................................................................................................((((((((..(((((((....(((...)))...((((..(((((((...((((((...((((((((.....))))))))))))))..(((.......))).)))))))..))))...))))))).((((.....))))..))))))))......................................................
...............................................................................................................................................................................................................................................................................272.....................................................................................................................................................424................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................................................................................ACTGCTCTTTTTTCTGGGAGGAA...................................................................................................................................................................................................................................................................................................................... 231.000.00-----------------------------------------1.00-------------
................................................................................................................................................................................................................TATTATTTGTTGCTACCGA....................................................................................................................................................................................................................................................... 191.000.00------------------------1.00------------------------------
............................................................................GTTTTGAGTTCCTTGTCTG........................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------1.00--------------------