ID: uc003fjw.2_intron_2_0_chr3_179288030_f.5p
GENE: (3)
chr3:179287980-179288229+


(3)
B-CELL
(1)
BRAIN
(1)
BREAST
(4)
CELL-LINE
(1)
CERVIX
(2)
OTHER
(1)
SKIN
(1)
TESTES

Sense strand
TGTTCCGAGGGAGAATATGGAGGCCATTTCACCTCTAAAAAATGGGATGGGTATGATGTTTTCCCCATGGAATTGATTATGGAGTGTACATGTTATATTTTAGATACAAAGTAGTAGCTTCCTATAAGTTGAACATCAACCATGGTTTTTTGTTTTGTTTTGTTTTTTATTCCACAAACTGATTTCCAGACACTGAGAATACAAAGATGCATAAGAAATGTTCCTTTTCATTAAAAGCTTACAGTTAGTT
.....................................................................................................(((.(((((((((.(((...((((..((((.....)))).))))......)))))))))))).)))...................................................................................
.....................................................................................................102..................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577738(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTACTCC.............................................................................3140.000.0028.0012.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCTTC.................................................................................2719.000.0010.009.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTATCCC.............................................................................3114.000.009.005.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCACC.................................................................................2710.000.007.002.00--1.00---------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTTTACTCC.............................................................................3210.000.007.003.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCTC.................................................................................279.000.004.005.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCTCT................................................................................287.000.003.004.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTTT..................................................................................266.000.002.004.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTCGTT.................................................................................284.000.002.002.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCCC..................................................................................263.000.003.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTATTCC.............................................................................3113.003.001.002.00------------
...............................................................................................................................................GGTTTTTTGTTTTGTTTTGTTTTCTGC................................................................................273.000.003.00-------------
.................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTTTATTCC.............................................................................2813.003.00-3.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTT...................................................................................253.000.00-3.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCGCT................................................................................283.000.001.002.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTCTG...................................................................................263.000.00-3.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTGTC.................................................................................282.000.002.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTGTTC................................................................................292.000.001.001.00------------
..........................................................................................................................................ACCATGGTTTTTTGTTTTGTTTTGTTTCT...................................................................................292.000.002.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTCT...................................................................................262.000.002.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTTTATTCC.............................................................................3212.002.00-2.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTCTT...................................................................................262.000.00-2.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTCGGG...............................................................................292.000.002.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCCC.................................................................................272.000.002.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTCCG..................................................................................272.000.002.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTTTATCCC.............................................................................322.000.00-2.00------------
.......................................................................................................................................TCAACCATGGTTTTTTGTTTTGTTTTGTC......................................................................................292.000.002.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTCTC......................................................................................222.000.002.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTATCCA.............................................................................312.000.002.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCAC..................................................................................262.000.00-2.00------------
....CCGAGGGAGAATATGGAGGCCA................................................................................................................................................................................................................................2212.002.00---2.00----------
..............................................................................................................................................TGGTTTTTTGTTTTGTTCTT........................................................................................202.000.00-2.00------------
...........................................................................................................................................CCATGGTTTTTTGTTTTGTTTTGTTTTC...................................................................................282.000.00-2.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTCT..................................................................................271.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCTTA................................................................................281.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTCTC......................................................................................231.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTCTGC................................................................................291.000.00-1.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTCCTT..................................................................................271.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTCGTC......................................................................................221.000.001.00-------------
..........................................................................................................CAAAGTAGTAGCTTCAGT..............................................................................................................................181.000.00--1.00-----------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCTTG.................................................................................271.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTCTG.........................................................................................191.000.001.00-------------
.................................................................................................................................................TTTTTTGTTTTGTTTTGTTGCTG..................................................................................231.000.00-1.00------------
...............................................................................................................................................GGTTTTTTGTTTTGTTTTGTCCTG...................................................................................241.000.00----1.00---------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCTGC.................................................................................271.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTC...................................................................................251.000.00-1.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTCC.....................................................................................241.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTGGCC..............................................................................301.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTCT..................................................................................261.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTCTT..................................................................................271.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTCTC..................................................................................271.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTGCCT................................................................................291.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCTC..................................................................................261.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTCTGC......................................................................................221.000.001.00-------------
..........................................................................GATTATGGAGTGTACTGG..............................................................................................................................................................181.000.00-----------1.00--
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTCTG................................................................................281.000.00-----1.00--------
..........................................................................................................................................ACCATGGTTTTTTGTTTTGTTTTGTT......................................................................................2621.001.000.500.50------------
................................................................................................................................................GTTTTTTGTTTTGTTTTGTTTTTTAATCC.............................................................................291.000.001.00-------------
...............................................................................................................................................GGTTTTTTGTTTTGTTTCGGC......................................................................................211.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCGGG.................................................................................271.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTACCCC.............................................................................311.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTAC.................................................................................271.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCA..................................................................................261.000.001.00-------------
..................................................................................................................................................TTTTTGTTTTGTTTTGTTTTTTATTCC.............................................................................2711.001.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTCTA.................................................................................281.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTCC.........................................................................................191.000.001.00-------------
.........................................................................................................ACAAAGTAGTAGCTTCAG...............................................................................................................................181.000.00--1.00-----------
...............................................................................................................................................GGTTTTTTGTTTTGTTTTGTTTGGTC.................................................................................261.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTGTCT................................................................................291.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTATC...............................................................................291.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTCGGC.................................................................................271.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTTTTATC..............................................................................311.000.00-1.00------------
..................................CTAAAAAATGGGATGGTA......................................................................................................................................................................................................181.000.00--------1.00-----
..........................................................................................................CAAAGTAGTAGCTTCAGTT.............................................................................................................................191.000.00--1.00-----------
...............................................TGGGTATGATGTTTTTGAT........................................................................................................................................................................................191.000.00------1.00-------
...........................................................................................................AAAGTAGTAGCTTCCTAT.............................................................................................................................1811.001.00---------1.00----
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTTG..................................................................................261.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTCC..................................................................................261.000.001.00-------------
...............................................................................................................................................GGTTTTTTGTTTTGTTTTGTTTGGCT.................................................................................261.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTATCC..............................................................................301.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTACCCA.............................................................................311.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTGCTT.................................................................................271.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTCGAC.....................................................................................231.000.001.00-------------
....................................................................................................................................................TTTGTTTTGTTTTGTTTTTTATCTTC............................................................................261.000.001.00-------------
........................................................................TTGATTATGGAGTGTACATGT.............................................................................................................................................................2111.001.00----------1.00---
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCTCC................................................................................281.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTCGC.................................................................................271.000.00-1.00------------
...............................................................................................................................................GGTTTTTTGTTTTGTTTTGTTCGAG..................................................................................251.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTGT....................................................................................251.000.00-1.00------------
.......................CCATTTCACCTCTAAAAAATG..............................................................................................................................................................................................................2111.001.00-------1.00------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTGTCC................................................................................291.000.00-1.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTCTTG........................................................................................211.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTCTT.................................................................................281.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTCTA......................................................................................221.000.00-1.00------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTCTTT..................................................................................271.000.00-1.00------------
................................................................................................................................................GTTTTTTGTTTTGTTTTGTTGCTG..................................................................................241.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCTGG..................................................................................261.000.00-1.00------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTCACC..................................................................................261.000.00-1.00------------
............................................................................................................................................CATGGTTTTTTGTTTTGTTTTGTTTTTTATTA..............................................................................321.000.001.00-------------
..........................................................................................................................................ACCATGGTTTTTTGTTTTGTTTTGTTTTTTACT...............................................................................331.000.001.00-------------
.............................................................................................................................................ATGGTTTTTTGTTTTGTTTTGTTTTTTAC................................................................................291.000.00-1.00------------
.................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTTTATCCC.............................................................................281.000.00-1.00------------
................................................................................................................................................GTTTTTTGTTTTGTTTTGTTTTCCGC................................................................................261.000.001.00-------------
...............................................................................................................................................GGTTTTTTGTTTTGTTTTGTTCTA...................................................................................241.000.001.00-------------
..............................................................................................................................................TGGTTTTTTGTTTTGTTTTGTTTTTTATT...............................................................................2920.500.500.50-------------
..............................................................................................................................................................................................CACTGAGAATACAAAGATGC........................................2020.500.50------------0.50-
........GGGAGAATATGGAGGCC.................................................................................................................................................................................................................................1730.330.33-------------0.33

Antisense strand
TGTTCCGAGGGAGAATATGGAGGCCATTTCACCTCTAAAAAATGGGATGGGTATGATGTTTTCCCCATGGAATTGATTATGGAGTGTACATGTTATATTTTAGATACAAAGTAGTAGCTTCCTATAAGTTGAACATCAACCATGGTTTTTTGTTTTGTTTTGTTTTTTATTCCACAAACTGATTTCCAGACACTGAGAATACAAAGATGCATAAGAAATGTTCCTTTTCATTAAAAGCTTACAGTTAGTT
.....................................................................................................(((.(((((((((.(((...((((..((((.....)))).))))......)))))))))))).)))...................................................................................
.....................................................................................................102..................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577738(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
..........................................................................................................................................................................TCCACAAACTGATTTTTG.............................................................. 181.000.00-----1.00--------