ID: uc003feg.2_intron_2_0_chr3_162632023_f.3p
GENE: (3)
chr3:162743984-162744233+


(4)
AGO2.ip
(1)
BRAIN
(12)
BREAST
(14)
CELL-LINE
(2)
CERVIX
(2)
LIVER
(5)
OTHER
(32)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGAATGTCCTATACATACATATTATAAAATTTTCAGAAGATTATTCAACCAAATCATTGTTATAAGGAGGTAGTTTTAAAAATGTATTGAGCTATACTACTTCACTCATAATTTCTTAGTATGCTTTAGGATATTAGTTTAAACTCTCAACTTATATGACAGCCTCTCTCTCTCTCTCTCCCCATCCTTCTTTCTCTTAGAGGAGTTAGAAGTTACTTCTTTGTGCTGATGTGGTGATGCATGGGATGTT
.................................................................((((((.((((((((...(((((((((.((((((.................))))))))))...)))))...)))))...............))).))))))...................................................................................
............................................................61................................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR189782SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189785
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCCCGCT...............................................................25057.006.00---4.003.00--4.00-2.003.00--2.002.002.002.00-1.00---1.001.00-1.00-1.001.001.00-1.00-1.001.00-1.001.00-1.001.001.001.001.00-1.001.001.00--1.001.001.001.001.00-1.001.001.001.001.001.00-1.001.00----
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCCC..................................................................22010.006.003.002.002.00--------1.00-----1.00--------------------1.00------------------------------
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCC...................................................................2106.006.001.002.001.00--------1.00--------------------------------1.00------------------------
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCC....................................................................2004.004.001.001.002.00------------------------------------------------------------------
...................................................................................................................................................................CTCTCTCTCTCTCTCTCCCG...................................................................203.000.002.00-----------------------------------------------1.00--------------------
..........................................................................................................................................................................TCTCTCTCTCCCCATAAAG.............................................................192.000.00-------------------2.00-------------------------------------------------
.................................................................................................................................................................GCCTCTCTCTCTCTCTCTCCCCCG.................................................................242.000.00------------------------------1.00----1.00---------------------------------
.................................................................................................................................................................GCCTCTCTCTCTCTCTCTCCCCCGC................................................................252.000.00------------2.00--------------------------------------------------------
.....................................................................................................................................................................CTCTCTCTCTCTCTCCCCG..................................................................192.000.00-1.00---------1.00---------------------------------------------------------
.....................................................................................................................................................................CTCTCTCTCTCTCTCCCG...................................................................181.000.00-1.00-------------------------------------------------------------------
............................................................................................................................................AAACTCTCAACTTATGATG...........................................................................................191.000.00--------------------------1.00------------------------------------------
...................................................................................................................................................................CTCTCTCTCTCTCTCTCCCCACGC...............................................................2401.001.00------1.00--------------------------------------------------------------
...............................................................................................................................................................CAGCCTCTCTCTCTCTCTTGCC.....................................................................221.000.00--------1.00------------------------------------------------------------
...................................................................................................................................................................CTCTCTCTCTCTCTCTCCCCA..................................................................2101.001.00-1.00-------------------------------------------------------------------
.................................................................GGAGGTAGTTTTAAATAT.......................................................................................................................................................................181.000.00---------------------1.00-----------------------------------------------
.....................................................................................................................................................................CTCTCTCTCTCTCTCCCCGG.................................................................201.000.001.00--------------------------------------------------------------------
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCC.....................................................................1901.001.00-----------------1.00---------------------------------------------------
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCGCG.................................................................2301.004.00--------------------------------1.00------------------------------------
...................................................................................................................................................................CTCTCTCTCTCTCTCTCCCCG..................................................................211.000.001.00--------------------------------------------------------------------
......................................................................................................................................................................TCTCTCTCTCTCTCCCCGG.................................................................191.000.00------------------1.00--------------------------------------------------
...........................................................................................................................................................ATGACAGCCTCTCTCGTT.............................................................................181.000.00-----------------------------------------------------------------1.00---
...................................................................................................................................................................CTCTCTCTCTCTCTCTCCCCGG.................................................................221.000.001.00--------------------------------------------------------------------
................................................................................................CTACTTCACTCATAATT.........................................................................................................................................1720.500.50------------------------------------------------------------------0.50--
.......................................................................................................................................................................CTCTCTCTCTCTCCCCATCCT..............................................................2130.330.33-------------------------------------------------------------------0.33-
.......................................................................................................ACTCATAATTTCTTAG...................................................................................................................................1640.250.25--------------------------------------------------------------------0.25
..........................................................................................................................................................................TCTCTCTCTCCCCATCCT..............................................................1880.120.12----------------------0.12----------------------------------------------

Antisense strand
TGAATGTCCTATACATACATATTATAAAATTTTCAGAAGATTATTCAACCAAATCATTGTTATAAGGAGGTAGTTTTAAAAATGTATTGAGCTATACTACTTCACTCATAATTTCTTAGTATGCTTTAGGATATTAGTTTAAACTCTCAACTTATATGACAGCCTCTCTCTCTCTCTCTCCCCATCCTTCTTTCTCTTAGAGGAGTTAGAAGTTACTTCTTTGTGCTGATGTGGTGATGCATGGGATGTT
.................................................................((((((.((((((((...(((((((((.((((((.................))))))))))...)))))...)))))...............))).))))))...................................................................................
............................................................61................................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR189782SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189785
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCCGC................................................................. 2304.000.00------2.00--1.00--------------1.00--------------------------------------------
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCCGCG................................................................ 2403.000.00-----3.00---------------------------------------------------------------
.....................................................................................................................................................................CTCTCTCTCTCTCTCCCCATCGTA............................................................. 242.000.00--------2.00------------------------------------------------------------
.........................................................................................TGAAGTAGTATAGCT.................................................................................................................................................. 1541.251.25--------------------1.25------------------------------------------------
.......................................................................................................ACTCATAATTTCTTAAAAA................................................................................................................................ 191.000.00-------------------------------------------------1.00-------------------
.......................................................................................................................................................................CTCTCTCTCTCTCCCCATCC............................................................... 201.000.00--------------------------------------------------------------1.00------
.....................................................................................................................................................................CTCTCTCTCTCTCTCCCCATTGA.............................................................. 231.000.00-----1.00---------------------------------------------------------------
.............................................................................................................................................................GACAGCCTCTCTCTCTCTC.......................................................................... 191.000.00----1.00----------------------------------------------------------------
.......................................................................................................ACTCATAATTTCTTAAAA................................................................................................................................. 181.000.00-------------------------------------------------------1.00-------------
..................................................................................................................................................................CCTCTCTCTCTCTCTCTCCCGCGC................................................................ 2401.000.00------1.00--------------------------------------------------------------
......................................................................................................................................TGAGAGTTTAAACTA..................................................................................................... 1570.140.14---------------------0.14-----------------------------------------------