ID: uc003egm.2_intron_1_0_chr3_123337615_r.5p
GENE: (1)
chr3:123338854-123339103-


(1)
AGO2.ip
(1)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(3)
LIVER
(5)
OTHER
(9)
SKIN
(1)
TESTES

Sense strand
AACAGGGTCACCAACCAGCCCGCTCAATGCAGAAAAACTAGAATCTGAAGGTAAGGAGGAGTTTCTCCAGCCAGCTGGTGAGAAAGAAAGGGCTGGGGAACAAAGGGGCATTTTGAGGTTTTGGTTGGTTTTGTTCTTTTTTTTTTTATTTTAATATTCCCTGCAAGGATAAATTCAGAAGTAATTTTGGGTTGCCCTGACAATTACTAAGTCTAATAATTATTCTTAATCGTTTAACTTTAAGCTTAAC
.........................................................(((((((((((((((..((........))....)))))))))).(((((..((..((((........))))...))..)))))...............)))))..........................................................................................
........................................................57.........................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
.............................................................TTTCTCCAGCCAGCTTTTG..........................................................................................................................................................................1910.000.00-5.00----4.00-------------------1.00--------
...............CAGCCCGCTCAATGCAGAAAAACTAG.................................................................................................................................................................................................................2612.002.00------------2.00----------------------
............................................................................................................................................TTTTTTTATTTTAATATATC..........................................................................................202.000.00----2.00------------------------------
...............................GAAAAACTAGAATCTGAAGAAG.....................................................................................................................................................................................................2212.001.00--------2.00--------------------------
................................................................................................................................TTTTGTTCTTTTTTTTTTGTTC....................................................................................................222.000.00-----------1.00---------------1.00-------
.....................................................................................................................................TTCTTTTTTTTTTTATTTTCTTG..............................................................................................232.000.00---1.00---1.00---------------------------
...............................................................................................................................GTTTTGTTCTTTTTTTTTTCC......................................................................................................212.000.002.00----------------------------------
..........................ATGCAGAAAAACTAGAATC.............................................................................................................................................................................................................1912.002.00----------2.00------------------------
...............................GAAAAACTAGAATCTGAAGAA......................................................................................................................................................................................................2112.001.00-----1.00--1.00--------------------------
..................................AAACTAGAATCTGAAGAAG.....................................................................................................................................................................................................192.000.00-----1.00--------1.00--------------------
................................................................................................................................TTTTGTTCTTTTTTTTTATCT.....................................................................................................211.000.00----1.00------------------------------
.........................................................................................................................................TTTTTTTTTTATTTTAATCTAT...........................................................................................221.000.00---------1.00-------------------------
...............................GAAAAACTAGAATCTGAAG........................................................................................................................................................................................................1911.001.00-----------------1.00-----------------
..................................................................................................................................TTGTTCTTTTTTTTTTTATTGA..................................................................................................221.000.00----1.00------------------------------
......................................................................................................................TTTTGGTTGGTTTTGTTTTCG...............................................................................................................211.000.001.00----------------------------------
............AACCAGCCCGCTCAATGCAGAAAAACT...................................................................................................................................................................................................................2711.001.00-----1.00-----------------------------
.......................................................................................................................TTTGGTTGGTTTTGTTCTTTTGGTT..........................................................................................................251.000.001.00----------------------------------
...............................GAAAAACTAGAATCTGAAGATG.....................................................................................................................................................................................................2211.001.00-----1.00-----------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTCCCC................................................................................................211.000.001.00----------------------------------
............................GCAGAAAAACTAGAATCTGAAGA.......................................................................................................................................................................................................231.000.00-----1.00-----------------------------
......................................................................................................................................TCTTTTTTTTTTTATTTTCCTT..............................................................................................221.000.00--1.00--------------------------------
...................................................................................................................................TGTTCTTTTTTTTTTTAAAAG..................................................................................................211.000.00---1.00-------------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTGGGT...............................................................................................221.000.001.00----------------------------------
..........................................................................................................................................TTTTTTTTTATTTTAATATTTTAT........................................................................................241.000.00----1.00------------------------------
..............................AGAAAAACTAGAATCTGAAGAT......................................................................................................................................................................................................221.000.00----------------------------1.00------
......................................................................................................................................TCTTTTTTTTTTTATTTTATCTG.............................................................................................231.000.00---------1.00-------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTCATC...............................................................................................221.000.00-------1.00---------------------------
..................................................................................................................................TTGTTCTTTTTTTTTTTATTTTTTTT..............................................................................................261.000.001.00----------------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTTCGTG..............................................................................................231.000.00---1.00-------------------------------
.........................................................................................................................TGGTTGGTTTTGTTCTTGGT.............................................................................................................201.000.00--1.00--------------------------------
............................................................................................................................TTGGTTTTGTTCTTTTTTTTTTTTC.....................................................................................................251.000.001.00----------------------------------
...................CCGCTCAATGCAGAAAAACTAGAATCTGAAG........................................................................................................................................................................................................3111.001.00------------------------------1.00----
..........................ATGCAGAAAAACTAGAATCTGA..........................................................................................................................................................................................................2211.001.00-------------------1.00---------------
.......................................................................CAGCTGGTGAGAAAGAATG................................................................................................................................................................191.000.00-----------1.00-----------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTGGCT...............................................................................................221.000.00--1.00--------------------------------
......................................................................................................................................TCTTTTTTTTTTTATTTTATATG.............................................................................................231.000.00-------------------------------1.00---
......................................................................................................................................TCTTTTTTTTTTTATTTTGAGC..............................................................................................221.000.001.00----------------------------------
.......................................................................................................................................CTTTTTTTTTTTATTTTATTAG.............................................................................................221.000.00---1.00-------------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTTCTCG..............................................................................................231.000.00-------1.00---------------------------
.........................................................................................................................................TTTTTTTTTTATTTTAATCTG............................................................................................211.000.00---1.00-------------------------------
.........................................................................................................................................TTTTTTTTTTATTTTAATATAG...........................................................................................221.000.00---1.00-------------------------------
..............................................................................................................................GGTTTTGTTCTTTTTAATC.........................................................................................................191.000.001.00----------------------------------
..................................................................................................................................................................................AAGTAATTTTGGGTTGGGAA....................................................201.000.00--------------------1.00--------------
......................................................................................................................TTTTGGTTGGTTTTGTTGGG................................................................................................................201.000.00--1.00--------------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTGGCC...............................................................................................221.000.00--1.00--------------------------------
......................................................................................................................................TCTTTTTTTTTTTATTTTGGCA..............................................................................................221.000.00--1.00--------------------------------
.............................CAGAAAAACTAGAATCTGAAGAAGA....................................................................................................................................................................................................251.000.00----------------1.00------------------
...............................GAAAAACTAGAATCTGAAGAAGA....................................................................................................................................................................................................2311.001.00------------------------1.00----------
........................................................................................................................TTGGTTGGTTTTGTTCTTGG..............................................................................................................201.000.001.00----------------------------------
..........................................................................................................................................TTTTTTTTTATTTTAATAACTG..........................................................................................221.000.00-1.00---------------------------------
......................................................................................................................TTTTGGTTGGTTTTGTTCTTTTGTTC..........................................................................................................261.000.00--1.00--------------------------------
...............................................................................................................................GTTTTGTTCTTTTTTTTTTTGGCT...................................................................................................241.000.001.00----------------------------------
.....................................................................................................................................TTCTTTTTTTTTTTATTTGGG................................................................................................211.000.00---1.00-------------------------------
.............................................................................................................................TGGTTTTGTTCTTTTTCTTT.........................................................................................................201.000.001.00----------------------------------
.............................................................................................................................TGGTTTTGTTCTTTTTTTTTTTTGGC...................................................................................................261.000.001.00----------------------------------
................AGCCCGCTCAATGCAGAAAAA.....................................................................................................................................................................................................................2111.001.00-----1.00-----------------------------
...............................GAAAAACTAGAATCTGAAGGTAAGGAGGAGT............................................................................................................................................................................................3111.001.00----------------------1.00------------
................................................................................AGAAAGAAAGGGCTGGGGA.......................................................................................................................................................1920.500.50--------------------------------0.50--
.................................................................................................................................TTTGTTCTTTTTTTTTTTATTT...................................................................................................2230.330.33----0.33------------------------------
.................................AAAACTAGAATCTGAAG........................................................................................................................................................................................................1740.250.25----------------------------------0.25
.................................AAAACTAGAATCTGAAGAAGA....................................................................................................................................................................................................2140.250.25---------------------------------0.25-
.................................................................................................................TGAGGTTTTGGTTGG..........................................................................................................................1590.110.110.11----------------------------------

Antisense strand
AACAGGGTCACCAACCAGCCCGCTCAATGCAGAAAAACTAGAATCTGAAGGTAAGGAGGAGTTTCTCCAGCCAGCTGGTGAGAAAGAAAGGGCTGGGGAACAAAGGGGCATTTTGAGGTTTTGGTTGGTTTTGTTCTTTTTTTTTTTATTTTAATATTCCCTGCAAGGATAAATTCAGAAGTAATTTTGGGTTGCCCTGACAATTACTAAGTCTAATAATTATTCTTAATCGTTTAACTTTAAGCTTAAC
.........................................................(((((((((((((((..((........))....)))))))))).(((((..((..((((........))))...))..)))))...............)))))..........................................................................................
........................................................57.........................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
..........................................................................................................................GGTTGGTTTTGTTCTCGGT............................................................................................................. 191.000.00-----------------------------1.00-----
............................TCCTCCTTACCTTCAGATTCTAGTTTTTCTGC.............................................................................................................................................................................................. 3211.001.00-----------------------1.00-----------
..............................................................................................................................................TTTTTATTTTAATATTCAAG........................................................................................ 201.000.00-1.00---------------------------------
................................AAAAACTAGAATCTGAATTC...................................................................................................................................................................................................... 201.000.00----1.00------------------------------
..........................................................................................................................GGTTGGTTTTGTTCTCG............................................................................................................... 171.000.00------------------1.00----------------
.........................................................CCAGCTGGCTGGAGAAACTCC............................................................................................................................................................................ 2111.001.00---------------1.00-------------------
...........CAACCAGCCCGCTCAAT.............................................................................................................................................................................................................................. 171.000.00-------------1.00---------------------
...............................................................TCTCCAGCCAGCTGGGC.......................................................................................................................................................................... 171.000.001.00----------------------------------
.......................CTTCAGATTCTAGTTTTTCTGCATTGA........................................................................................................................................................................................................ 2711.001.00---------------------1.00-------------
.................................................................................................................................................................................................TAATTATTAGACTTAGTAATTGTCAGGGC............................ 2911.001.00-------------------------1.00---------