ID: uc003dfv.2_intron_15_0_chr3_52839857_f
GENE: ITIH3(16)
chr3:52839807-52840168+


(1)
B-CELL
(1)
BRAIN
(2)
BREAST
(9)
CELL-LINE
(3)
CERVIX
(3)
HEART
(5)
HELA
(6)
LIVER
(1)
OTHER
(9)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCCCTTCGGCTTTTCAGCCACACCGGTGAGCCCCGCCATGTCCTACCTGAGTGAGTACATGCTGGCAGCTGCCACTCCTCCCACTGCTTAGAGCCTGCCCCTGCCACATGTCCCTCCACCGTGGCTACTCACTCAGCTCTCCGGGATGGGCAGATGGACAATGTGCCCTGAGGAGATTGCGGGGTGGGAGGGCAATGGCATTAGCGAGCGGGAAGGGGAGGGGAGGGGCATAAGCTGAACTCCTATGGGGGTCGTCGGGCGCCTCCCAGGGCCACTTGCTTAGCTCAGCCCTCTCTCCCTTTGTATCTGCAGCCAGCTACCAGCCTCCTCAAAACCCCTACTACTATGGTGAGTCCCTGGCT
..........................................................................................(((..((.....(((((.((......))..)))))....)))))....................................................................................................................................................................................................................................
......................................................................71..............................................................135.................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189782SRR029124(GSM416753)
HeLa. (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040039(GSM532924)
G531T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
..................................................................................................................TCCACCGTGGCTACTGC.......................................................................................................................................................................................................................................1772.000.0049.0020.00--------------------1.00--------1.00--1.00---------
..................................................................................................................TCCACCGTGGCTACTGCGC.....................................................................................................................................................................................................................................1910.000.00-1.00----3.00-----2.00--1.00--1.00-1.00------1.00----------------
..................................................................................................................TCCACCGTGGCTACTG........................................................................................................................................................................................................................................167.000.005.001.00--------------1.00---------------------------
..................................................................................................................TCCACCGTGGCTACTGCG......................................................................................................................................................................................................................................186.000.001.00----3.00---1.00-------------------------1.00--------
..........................................................................................................................................................................................................................................................................................................................AGCTACCAGCCTCCTCAAAACCC.........................2313.003.00--3.00-----------------------------------------
......................................................................................................GCCACATGTCCCTCCACCGT................................................................................................................................................................................................................................................2012.002.00----------2.00---------------------------------
...........................................................................TCCTCCCACTGCTTAGAGCGAGA........................................................................................................................................................................................................................................................................232.000.00--2.00-----------------------------------------
..............................................................................................................................................................................................................................................................................................................................ACCAGCCTCCTCAAAACCCCTA......................2212.002.00--2.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AAAACCCCTACTACTATA..............181.000.00--1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGCCTCCTCAAAACCCCTACTACT.................2411.001.00--1.00-----------------------------------------
........................GGTGAGCCCCGCCATGTCCTAC............................................................................................................................................................................................................................................................................................................................2211.001.00---1.00----------------------------------------
.....................ACCGGTGAGCCCCGCCATGTCCT..............................................................................................................................................................................................................................................................................................................................2311.001.00-----------1.00--------------------------------
.............................................................................................................................................CGGGATGGGCAGATGGACAATG.......................................................................................................................................................................................................2211.001.00--1.00-----------------------------------------
.............................................................................................................................................CGGGATGGGCAGATGGATA..........................................................................................................................................................................................................191.000.00--1.00-----------------------------------------
......................................................................................................................................................................................................................................................GGGGGTCGTCGGGCGGGG..................................................................................................181.000.00-------------------1.00------------------------
..........................................................................................................................................................................................................................................................................................................................AGCTACCAGCCTCCTCAAAAC...........................2111.001.00---1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................CTCAGCCCTCTCTCCACTG............................................................191.000.00--------1.00-----------------------------------
.....................ACCGGTGAGCCCCGCCATGTCTT..............................................................................................................................................................................................................................................................................................................................231.000.00-----------1.00--------------------------------
.......................CGGTGAGCCCCGCCATGTCCTAC............................................................................................................................................................................................................................................................................................................................2311.001.00---1.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................CAGCTACCAGCCTCCTCAAAACCCCT.......................2611.001.00---1.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................CAGCTACCAGCCTCCTCAAAACCCCTAC.....................2811.001.00---1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................GCTACCAGCCTCCTCAAAATA..........................211.000.00--1.00-----------------------------------------
...................................................................................................................................................................................CGGGGTGGGAGGGCATA......................................................................................................................................................................171.000.00-----------------------------1.00--------------
............................AGCCCCGCCATGTCCTACCT..........................................................................................................................................................................................................................................................................................................................2011.001.00--1.00-----------------------------------------
................................CCGCCATGTCCTACCTGAC.......................................................................................................................................................................................................................................................................................................................191.000.00--1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................................AGCTACCAGCCTCCTCAAAACC..........................2211.001.00---1.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................AGCTACCAGCCTCCTCAAAACCCCTACT....................2811.001.00---1.00----------------------------------------
..................................................................................................................TCCACCGTGGCTACTCTCTG....................................................................................................................................................................................................................................201.000.00----1.00---------------------------------------
...................ACACCGGTGAGCCCCGCCATG..................................................................................................................................................................................................................................................................................................................................2111.001.00--1.00-----------------------------------------
.........................................................................................................................TGGCTACTCACTCAGCTCT..............................................................................................................................................................................................................................1911.001.00--1.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................AAACCCCTACTACTATGACG...........201.000.00--1.00-----------------------------------------
............................AGCCCCGCCATGTCCTACCTGA........................................................................................................................................................................................................................................................................................................................2211.001.00---1.00----------------------------------------
.............................................................CTGGCAGCTGCCACTCCTCAT........................................................................................................................................................................................................................................................................................211.000.00--------1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................AGCTACCAGCCTCCTCAAAACCCC........................2411.001.00--1.00-----------------------------------------
...............AGCCACACCGGTGAGCCCCGCC.....................................................................................................................................................................................................................................................................................................................................2211.001.00---1.00----------------------------------------
..................CACACCGGTGAGCCCCGCC.....................................................................................................................................................................................................................................................................................................................................1911.001.00---1.00----------------------------------------
............................................................................................................................................CCGGGATGGGCAGATGGA............................................................................................................................................................................................................1811.001.00--------------1.00-----------------------------
...................ACACCGGTGAGCCCCGCCATGTCCTAC............................................................................................................................................................................................................................................................................................................................2711.001.00---1.00----------------------------------------
............................AGCCCCGCCATGTCCTAC............................................................................................................................................................................................................................................................................................................................1811.001.00--1.00-----------------------------------------
...................................................................................................................................................................................CGGGGTGGGAGGGCATT......................................................................................................................................................................171.000.00--------------------------1.00-----------------
..........................................................................................................................................................................................................................................................................................................................AGCTACCAGCCTCCTCAAAATA..........................221.000.00---1.00----------------------------------------
...............................................................................................................................................................................ATTGCGGGGTGGGAGCCG.........................................................................................................................................................................181.000.00---------------------1.00----------------------
................................................................................................................................................................................TTGCGGGGTGGGAGGGC.........................................................................................................................................................................1730.330.33-------------------------------------0.33------
...................................................................................................................................................................................CGGGGTGGGAGGGCAA.......................................................................................................................................................................1650.200.20---------------------------------------0.20----
..................................................................................................................................................................................GCGGGGTGGGAGGGCA........................................................................................................................................................................1650.200.20----------------------------------------0.20---
....................................................................................................................................................................................GGGGTGGGAGGGCAAT......................................................................................................................................................................1680.120.12--------------------------------------0.12-----

Antisense strand
GCCCTTCGGCTTTTCAGCCACACCGGTGAGCCCCGCCATGTCCTACCTGAGTGAGTACATGCTGGCAGCTGCCACTCCTCCCACTGCTTAGAGCCTGCCCCTGCCACATGTCCCTCCACCGTGGCTACTCACTCAGCTCTCCGGGATGGGCAGATGGACAATGTGCCCTGAGGAGATTGCGGGGTGGGAGGGCAATGGCATTAGCGAGCGGGAAGGGGAGGGGAGGGGCATAAGCTGAACTCCTATGGGGGTCGTCGGGCGCCTCCCAGGGCCACTTGCTTAGCTCAGCCCTCTCTCCCTTTGTATCTGCAGCCAGCTACCAGCCTCCTCAAAACCCCTACTACTATGGTGAGTCCCTGGCT
..........................................................................................(((..((.....(((((.((......))..)))))....)))))....................................................................................................................................................................................................................................
......................................................................71..............................................................135.................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189782SRR029124(GSM416753)
HeLa. (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040039(GSM532924)
G531T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
.......................................................................................................................................................................................................ATTAGCGAGCGGGAAATTG................................................................................................................................................ 192.000.00----2.00---------------------------------------
..................................................................................................................................................................................................................GGAAGGGGAGGGGAGGGGGGT................................................................................................................................... 211.000.00---------1.00----------------------------------
..............................CCCCGCCATGTCCTACCTGT........................................................................................................................................................................................................................................................................................................................ 201.000.00-------------1.00------------------------------
..........................................................................CTCCTCCCACTGCTTAATA............................................................................................................................................................................................................................................................................. 191.000.00-----------------------1.00--------------------
......................................................................TAAGCAGTGGGAGGAGTGGC................................................................................................................................................................................................................................................................................ 2011.001.00-----------------1.00--------------------------
..................................................................................................................................................................................................................GGAAGGGGAGGGGAGGGCCA.................................................................................................................................... 201.000.00------------------------------1.00-------------
..................................................................................................CCCTGCCACATGTCCCTGCA.................................................................................................................................................................................................................................................... 201.000.00-------------1.00------------------------------
...................................................................................................................................................................................................................................................................................................................TGCAGCCAGCTACCAGCCTCAC................................. 221.000.00-------1.00------------------------------------
............................................................................................................................CCCGGAGAGCTGAGTGAGTAG......................................................................................................................................................................................................................... 2111.001.00----------------------------1.00---------------
.......................................................................................................................................................................................................ATTAGCGAGCGGGAAATCT................................................................................................................................................ 191.000.00----1.00---------------------------------------
..................................................................................................................................................................................................................................................................................................................TTTTGAGGAGGCTGGTAGCTGGCTGCAG............................ 2811.001.00-------1.00------------------------------------
.......................................................................................................................................GCTCTCCGGGATGGGGCA................................................................................................................................................................................................................. 181.000.00-------------------------1.00------------------
............................AGCCCCGCCATGTCCTTCC........................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------------1.00----------
...............................................................................................................................................................................................................................................................................................TACAAAGGGAGAGAGGGC......................................................... 1811.001.00--------------------------------1.00-----------
..........................................................................................................CATGTCCCTCCACCGAGA.............................................................................................................................................................................................................................................. 181.000.00------------------------1.00-------------------
...................................................................................................................................TCCCGGAGAGCTGAG........................................................................................................................................................................................................................ 1550.600.600.20-------------------------------------0.20--0.20--
...............................................................................................................................................................................................................................................................................................CAAAGGGAGAGAGGGC........................................................... 1620.500.50------------------------------------0.50-------
...........................................................................................................................................................................................................................................................................................AGGGAGAGAGGGCTGAG.............................................................. 1760.170.17-------0.17------------------------------------
.............................GCCCCGCCATGTCCTGCT........................................................................................................................................................................................................................................................................................................................... 180.120.00------------------------------------------0.12-
.............................AGGACATGGCGGGGC.............................................................................................................................................................................................................................................................................................................................. 1580.120.12-------------------------------------------0.12