ID: uc003cpb.3_intron_13_0_chr3_46016838_r.5p
GENE: (4)
chr3:46020997-46021246-


(1)
AGO2.ip
(4)
B-CELL
(1)
BREAST
(4)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
LIVER
(2)
OTHER
(4)
SKIN

Sense strand
AGGTGAAAGGAGCCAATGATGGGATCCGCTTTGTCAAGTCTATCTCAGAGGTAAGCTGAGCAAGCAGCCAACAACTTCATGTCGTCCTTTTGCCTGCTTAAAGCAGCTCTTGCAGAGACCTTTGCTGCAGACAGCTAAATAAGGAAGTGGGAGTTTATGGGTGGTAAAGAAATCTAGTCCAGGTATACGCAATGCCCATTGTTGCAGTGGCTCAAGGTTGGGGAAACCACTTCAGTGAGTGTTTATCAAG
..................................................((((((((...((((((.((((.((.....)).)).....)).))))))....)))))..))).........................................................................................................................................
..................................................51................................................................117...................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189782SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR343335SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................TGCTTAAAGCAGCTCTGGA.........................................................................................................................................1934.000.0025.009.00-----------------
..............................................................................................TGCTTAAAGCAGCTCTGG..........................................................................................................................................1829.000.0025.004.00-----------------
...............................................................................................GCTTAAAGCAGCTCTGGAC........................................................................................................................................198.000.007.001.00-----------------
..............................................................................................TGCTTAAAGCAGCTCTGGAC........................................................................................................................................205.000.002.003.00-----------------
..................................................GTAAGCTGAGCAAGCAG.......................................................................................................................................................................................1713.003.00--3.00----------------
.......................................................................................................................................................................................................................................TCAGTGAGTGTTTATTAG.183.000.00---3.00---------------
...............................................................................................GCTTAAAGCAGCTCTGGA.........................................................................................................................................183.000.003.00------------------
..............................................................................................TGCTTAAAGCAGCTCTGA..........................................................................................................................................183.000.002.001.00-----------------
..............................................................................................TGCTTAAAGCAGCTCTGGAT........................................................................................................................................202.000.002.00------------------
...............................................................................................GCTTAAAGCAGCTCTGA..........................................................................................................................................171.000.001.00------------------
...TGAAAGGAGCCAATGATGGGATCCG..............................................................................................................................................................................................................................2511.001.00----1.00--------------
........................................................................AACTTCATGTCGTCCAGCT...............................................................................................................................................................191.000.00---------------1.00---
........................................................................................................................TTTGCTGCAGACAGCACG................................................................................................................181.000.00-----------1.00-------
...........................................................................................................................................TAAGGAAGTGGGAGTGCGA............................................................................................191.000.00--------1.00----------
.....................................................AGCTGAGCAAGCAGCTG....................................................................................................................................................................................171.000.00------------1.00------
............CCAATGATGGGATCCG..............................................................................................................................................................................................................................1611.001.00----1.00--------------
.....AAAGGAGCCAATGATGGGATA................................................................................................................................................................................................................................211.000.00-----------------1.00-
..............................................................................................TGCTTAAAGCAGCTCTGGAA........................................................................................................................................201.000.001.00------------------
..............................................................................................TGCTTAAAGCAGCTCTGAG.........................................................................................................................................191.000.001.00------------------
...............................................................................................GCTTAAAGCAGCTCTG...........................................................................................................................................161.000.001.00------------------
................................................................................................................................................AAGTGGGAGTTTATGGGTGG......................................................................................2011.001.00----------------1.00--
......................................................................................................................CCTTTGCTGCAGACAGGGTG................................................................................................................201.000.00----------1.00--------
..............................................................................................TGCTTAAAGCAGCTCTG...........................................................................................................................................171.000.001.00------------------
...............................................................................................................................CAGACAGCTAAATAACCTA........................................................................................................191.000.00-----1.00-------------
.....AAAGGAGCCAATGATG.....................................................................................................................................................................................................................................1680.250.25------------------0.25

Antisense strand
AGGTGAAAGGAGCCAATGATGGGATCCGCTTTGTCAAGTCTATCTCAGAGGTAAGCTGAGCAAGCAGCCAACAACTTCATGTCGTCCTTTTGCCTGCTTAAAGCAGCTCTTGCAGAGACCTTTGCTGCAGACAGCTAAATAAGGAAGTGGGAGTTTATGGGTGGTAAAGAAATCTAGTCCAGGTATACGCAATGCCCATTGTTGCAGTGGCTCAAGGTTGGGGAAACCACTTCAGTGAGTGTTTATCAAG
..................................................((((((((...((((((.((((.((.....)).)).....)).))))))....)))))..))).........................................................................................................................................
..................................................51................................................................117...................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189782SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR343335SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................ACTTCATGTCGTCCTTTTA.............................................................................................................................................................. 191.000.00-------------1.00-----
............................................................................AGGCAAAAGGACGACATGA........................................................................................................................................................... 1911.001.00------1.00------------
..........................................................................................................................................................................................ACGCAATGCCCATTGTTT.............................................. 181.000.00---------1.00---------
.................................................................................................................................................................................................................GCTCAAGGTTGGGGAACC....................... 181.000.00--------------1.00----
.....................................................................................................................................ACCACCCATAAACTCCCACTTCCTTATTTAGC..................................................................................... 3211.001.00-------1.00-----------