ID: uc003bwc.2_intron_0_0_chr3_11314117_f.5p
GENE: (1)
chr3:11314067-11314316+


(17)
B-CELL 		(3)
BRAIN 		(12)
BREAST 		(29)
CELL-LINE 		(13)
CERVIX 		(6)
HEART 		(2)
HELA 		(1)
KIDNEY 		(8)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(27)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCGGGGCGCGCGCCTCAGAGAGAGCTGTGGTTGCCGGAAGTTGAGCGGCGGTAAGTGAGCCGCGGCGGGCGAGGGTGTAGTGGGGTCTTGCTGGGCCGGTTTTGGAGGCCTGGAGTCAAGGGGCGAGCTCGCCAGGGAGGGCGAGGGTCACAGCAAGTCTCAGGATCCTCCTCTGCCAGTTTCTGGGTGGTCCTTCCTCCTCCAGGGACTCACTGATTCCGGCTGGCGCCCTTCGTCTGTAGCCGCGTCC
...........................................................((((.(((........))).)))).(((((.(((((((.........)))))))......)))))..............................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040012(GSM532897)
G648N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR343335SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040017(GSM532902)
G645T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................GAGGCCTGGAGTCAAGGGG...............................................................................................................................19113.0013.0013.00--------------------------------------------------------------------------------------------------------------------------------
..............................TTGCCGGAAGTTGAGCGG..........................................................................................................................................................................................................18111.0011.00--1.00-------1.001.00-----1.00--------------1.00--------------------1.00-1.00------1.00-----------1.00-----------------------------------------1.00--------1.00---
...................GAGAGCTGTGGTTGCCGGAAG..................................................................................................................................................................................................................21111.0011.00---11.00-----------------------------------------------------------------------------------------------------------------------------
.............................GTTGCCGGAAGTTGAGCGGC.........................................................................................................................................................................................................2018.008.002.00----------1.00-1.00---1.00---------------------2.00-----------------------------1.00-----------------------------------------------------------
................................................................GCGGGCGAGGGTGTAGTG........................................................................................................................................................................1817.007.00-2.00-----1.00--------------------------------------2.00-------------1.00---------------------------------1.00----------------------------------
................AGAGAGAGCTGTGGTTGC........................................................................................................................................................................................................................1815.005.00----------------------2.00--------2.00----------------------------------------------------------------------------------1.00--------------
.............................................CGGCGGTAAGTGAGCCGC...........................................................................................................................................................................................1815.005.00--2.00---------------1.00------------------------------------------------------------------------1.00-----------------1.00-------------------
................................................................GCGGGCGAGGGTGTAGTGG.......................................................................................................................................................................1914.004.00-4.00-------------------------------------------------------------------------------------------------------------------------------
....................AGAGCTGTGGTTGCCGGA....................................................................................................................................................................................................................1814.004.00----------2.00----------------------------------------------------------------------------------------------------------1.001.00----------
.......................................................................................................................................................................................................................ATTCCGGCTGGCGCCACCA................194.000.00-------------------------2.00---------------------2.00---------------------------------------------------------------------------------
....................................................................................................................CAAGGGGCGAGCTCGCCAGGGAGGG.............................................................................................................2514.004.00------4.00--------------------------------------------------------------------------------------------------------------------------
.............................................CGGCGGTAAGTGAGCCG............................................................................................................................................................................................1714.004.00--3.00-------------------------1.00----------------------------------------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGTCTTGCTGG............................................................................................................................................................2414.004.00--------2.001.00---------------------------------------------------1.00-------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGTCT..................................................................................................................................................................1813.003.00-2.00-------1.00-----------------------------------------------------------------------------------------------------------------------
.......................................GTTGAGCGGCGGTAAGGG.................................................................................................................................................................................................1813.001.00------------------------------------------------1.00------1.00----------------------------------------1.00--------------------------------
..................AGAGAGCTGTGGTTGCCGGAAG..................................................................................................................................................................................................................2213.003.00------------1.00---------------------------1.00----------------------------------------------------1.00-----------------------------------
.......................................GTTGAGCGGCGGTAAGTG.................................................................................................................................................................................................1813.003.00--1.00-----------------------------1.00-----------------------------------------------------------------------------1.00------------------
...............................................................................................................................CTCGCCAGGGAGGGCGAGGGTCACAGCAAG.............................................................................................3013.003.00----2.00------------------------1.00---------------------------------------------------------------------------------------------------
..................................................................................................................GTCAAGGGGCGAGCTCGC......................................................................................................................1813.003.00--------------2.00-------------------------1.00----------------------------------------------------------------------------------------
................AGAGAGAGCTGTGGTTGCC.......................................................................................................................................................................................................................1913.003.00--------------------------------------------------1.00--------------------------------1.00---1.00-----------------------------------------
....................AGAGCTGTGGTTGCCGGAAGTTGAGCGGCG........................................................................................................................................................................................................3013.003.00--------------------------------------------------------2.001.00-----------------------------------------------------------------------
.........................................................................................GCTGGGCCGGTTTTGGAGGC.............................................................................................................................................2013.003.002.00---1.00----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................AGGCCTGGAGTCAAGGGGC..............................................................................................................................1913.003.00---------------------------2.00------1.00----------------------------------------------------------------------------------------------
..................................CGGAAGTTGAGCGGCGGTAAG...................................................................................................................................................................................................2113.003.00-----------------------------------2.00----------------1.00----------------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGTCTT.................................................................................................................................................................1913.003.00---------2.00----------------------------------1.00------------------------------------------------------------------------------------
.................................................................CGGGCGAGGGTGTAGTGG.......................................................................................................................................................................1812.002.00-2.00-------------------------------------------------------------------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGTCTTG................................................................................................................................................................2012.002.00-2.00-------------------------------------------------------------------------------------------------------------------------------
.......................GCTGTGGTTGCCGGAAGTTGAGCGG..........................................................................................................................................................................................................2512.002.00--1.00-----------------------------------------------------------------------------------------1.00------------------------------------
....................................................................GCGAGGGTGTAGTGGGGTC...................................................................................................................................................................1912.002.00-------------------------------------2.00-------------------------------------------------------------------------------------------
...........................................................CCGCGGCGGGCGAGGGTA.............................................................................................................................................................................182.000.00-----1.00----1.00----------------------------------------------------------------------------------------------------------------------
................................GCCGGAAGTTGAGCGGCGG.......................................................................................................................................................................................................1912.002.001.00------------1.00-------------------------------------------------------------------------------------------------------------------
...............................TGCCGGAAGTTGAGCGGCG........................................................................................................................................................................................................1912.002.00-----------------------------------------------------------------------1.00-------------------------------1.00-------------------------
......................................................GTGAGCCGCGGCGGGCGA..................................................................................................................................................................................1812.002.00-----2.00---------------------------------------------------------------------------------------------------------------------------
..............................TTGCCGGAAGTTGAGCGGC.........................................................................................................................................................................................................1912.002.00-----------1.00------------------------------------1.00--------------------------------------------------------------------------------
.......................................GTTGAGCGGCGGTAAGTGAGC..............................................................................................................................................................................................2112.002.00------------------------------------------------------2.00--------------------------------------------------------------------------
.......................GCTGTGGTTGCCGGAAGTT................................................................................................................................................................................................................1912.002.00------------1.00----------------------------------------1.00---------------------------------------------------------------------------
.......................GCTGTGGTTGCCGGAAGT.................................................................................................................................................................................................................1812.002.00-1.001.00------------------------------------------------------------------------------------------------------------------------------
..................................CGGAAGTTGAGCGGCGGCA.....................................................................................................................................................................................................192.000.00-----------------------------------------------------------------------------1.00---------------------------------1.00-----------------
.......................................................................AGGGTGTAGTGGGGTCTTG................................................................................................................................................................1912.002.00------------------------------------------2.00--------------------------------------------------------------------------------------
......................AGCTGTGGTTGCCGGAATTTT...............................................................................................................................................................................................................212.000.00------------------------------2.00--------------------------------------------------------------------------------------------------
.............................GTTGCCGGAAGTTGAGCGG..........................................................................................................................................................................................................1912.002.00----2.00----------------------------------------------------------------------------------------------------------------------------
..................AGAGAGCTGTGGTTGCCGGA....................................................................................................................................................................................................................2012.002.00----------------2.00----------------------------------------------------------------------------------------------------------------
................AGAGAGAGCTGTGGTTGCCG......................................................................................................................................................................................................................2012.002.00------------------------------------1.00--------------------------------------------------------------1.00-----------------------------
..............................TTGCCGGAAGTTGAGCGGCGGT......................................................................................................................................................................................................2212.002.00-------------------------------------------------2.00-------------------------------------------------------------------------------
............................GGTTGCCGGAAGTTGAGCG...........................................................................................................................................................................................................1912.002.00--------------------------2.00------------------------------------------------------------------------------------------------------
................................................................GCGGGCGAGGGTGTAGTGGGGT....................................................................................................................................................................2212.002.00--------2.00------------------------------------------------------------------------------------------------------------------------
..............................................................CGGCGGGCGAGGGTGTAG..........................................................................................................................................................................1812.002.00-------2.00-------------------------------------------------------------------------------------------------------------------------
..........................GTGGTTGCCGGAAGTTGAGCGGC.........................................................................................................................................................................................................2311.001.00-------------------------------------------------------------------1.00-------------------------------------------------------------
.........................................................AGCCGCGGCGGGCGAGGGTGTAGCGGG......................................................................................................................................................................271.000.00---------------------------------------------1.00-----------------------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGTCTTGCT..............................................................................................................................................................2211.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------
...........................TGGTTGCCGGAAGTTGAGCGGCGGC......................................................................................................................................................................................................251.000.00---------------1.00-----------------------------------------------------------------------------------------------------------------
..........................GTGGTTGCCGGAAGTTGA..............................................................................................................................................................................................................1811.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------
..............................................................................................GCCGGTTTTGGAGGCCTTGAG.......................................................................................................................................211.000.00----1.00----------------------------------------------------------------------------------------------------------------------------
..................................CGGAAGTTGAGCGGCGGCTAG...................................................................................................................................................................................................211.000.00----------1.00----------------------------------------------------------------------------------------------------------------------
...........................................................CCGCGGCGGGCGAGGGTGTAGTGGG......................................................................................................................................................................2511.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------
...................GAGAGCTGTGGTTGCCGGAAGTT................................................................................................................................................................................................................2311.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------
.................................CCGGAAGTTGAGCGGCGGTGA....................................................................................................................................................................................................211.000.00----------------------------------------------------------------------------------------------------------------------------1.00----
................................GCCGGAAGTTGAGCGG..........................................................................................................................................................................................................1611.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................GGGCGAGCTCGCCAGGGAGGG.............................................................................................................2111.001.00------------------------------------------------------------------1.00--------------------------------------------------------------
................AGAGAGAGCTGTGGTTGCA.......................................................................................................................................................................................................................1911.005.00-----------------1.00---------------------------------------------------------------------------------------------------------------
.............................................CGGCGGTAAGTGAGC..............................................................................................................................................................................................1511.001.00------------------------------------------------------------------------------------------------------------------------1.00--------
.................................................................CGGGCGAGGGTGTAGTG........................................................................................................................................................................1711.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------
..................AGAGAGCTGTGGTTGCCGG.....................................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------1.00--------------------------------------------------------
....................AGAGCTGTGGTTGCCGGAAGTT................................................................................................................................................................................................................2211.001.00--------------------------------------------------------------------1.00------------------------------------------------------------
.............................GTTGCCGGAAGTTGAGCCG..........................................................................................................................................................................................................191.000.00--------------------------------------1.00------------------------------------------------------------------------------------------
.......................GCTGTGGTTGCCGGAAGTTG...............................................................................................................................................................................................................2011.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------
................AGAGAGAGCTGTGGTTGCCGGA....................................................................................................................................................................................................................2211.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
..............TCAGAGAGAGCTGTGGTTGCCGG.....................................................................................................................................................................................................................2311.001.00----------------------------1.00----------------------------------------------------------------------------------------------------
.....................................AAGTTGAGCGGCGGTAAG...................................................................................................................................................................................................1811.001.00------------1.00--------------------------------------------------------------------------------------------------------------------
.................GAGAGAGCTGTGGTTGCCGGAAG..................................................................................................................................................................................................................2311.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------
...........................................AGCGGCGGTAAGTGAGCCG............................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------------------------------------------1.00-------------
................AGAGAGAGCTGTGGTTGCCGGAA...................................................................................................................................................................................................................2311.001.00------------------1.00--------------------------------------------------------------------------------------------------------------
................................................................................TGGGGTCTTGCTGGGCCGG.......................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------------1.00---------------------------------
..............................................................................AGTGGGGTCTTGCTGGGCCGGTTTGG..................................................................................................................................................261.000.00---------------------------------------------1.00-----------------------------------------------------------------------------------
.......................................GTTGAGCGGCGGTAAGTGAG...............................................................................................................................................................................................2011.001.00----------------------------------------------------------------1.00----------------------------------------------------------------
........................................TTGAGCGGCGGTAAGT..................................................................................................................................................................................................1611.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
......................................AGTTGAGCGGCGGTAAGTGA................................................................................................................................................................................................2011.001.00--------------------------------------------------1.00------------------------------------------------------------------------------
...............CAGAGAGAGCTGTGGGCG.........................................................................................................................................................................................................................181.000.00-------------------------------------------1.00-------------------------------------------------------------------------------------
..........CGCCTCAGAGAGAGCACCA.............................................................................................................................................................................................................................191.000.00-------------------------------------------------------------------------------------1.00-------------------------------------------
................AGAGAGAGCTGTGGTTGCCGGGA...................................................................................................................................................................................................................231.000.00-------------------------------------------1.00-------------------------------------------------------------------------------------
..........................GTGGTTGCCGGAAGTTGAG.............................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------------------------1.00----------------
......................AGCTGTGGTTGCCGGAAG..................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------1.00------------------------------
...................GAGAGCTGTGGTTGCCGGAAGTTGAGCGGCG........................................................................................................................................................................................................3111.001.00----------------------------------------------------------------------------1.00----------------------------------------------------
.....................GAGCTGTGGTTGCCGGAAG..................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------
........................................................................GGGTGTAGTGGGGTCTTG................................................................................................................................................................1811.001.00--------------------------------------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................AGGGAGGGCGAGGGTCACAG.................................................................................................2011.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------
...............................................GCGGTAAGTGAGCCGCGGCGGGCGAG.................................................................................................................................................................................2611.001.00----------------------------------------------------------------------1.00----------------------------------------------------------
..........................................................GCCGCGGCGGGCGAGGGTA.............................................................................................................................................................................191.000.00-------------------1.00-------------------------------------------------------------------------------------------------------------
.............CTCAGAGAGAGCTGTGGTTGCC.......................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------------------------------------------1.00--------------------------
.............................................CGGCGGTAAGTGAGCCGCGGCGGGCGAGGGTA.............................................................................................................................................................................321.000.00--------------1.00------------------------------------------------------------------------------------------------------------------
.....................GAGCTGTGGTTGCCGGAAGTTGAG.............................................................................................................................................................................................................2411.001.00----1.00----------------------------------------------------------------------------------------------------------------------------
.........................TGTGGTTGCCGGAAGTTTAG.............................................................................................................................................................................................................201.000.00----1.00----------------------------------------------------------------------------------------------------------------------------
.................................................................CGGGCGAGGGTGTAGTGGGGTCTT.................................................................................................................................................................2411.001.00--------1.00------------------------------------------------------------------------------------------------------------------------
.................................CCGGAAGTTGAGCGG..........................................................................................................................................................................................................1511.001.00-----------------------------------------------------------1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................................GCGCCCTTCGTCTGTAGGG......191.000.00------------------------------------------------------------------------------------1.00--------------------------------------------
....................................GAAGTTGAGCGGCGGGGA....................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------------------------------------1.00---------------
................................GCCGGAAGTTGAGCGGCGGTAAGTGA................................................................................................................................................................................................2611.001.00-----------------------------------------1.00---------------------------------------------------------------------------------------
....................................................AAGTGAGCCGCGGCGGGCGA..................................................................................................................................................................................2011.001.00------------------1.00--------------------------------------------------------------------------------------------------------------
.............................................CGGCGGTAAGTGAGCCGCGG.........................................................................................................................................................................................2011.001.00---------------------------------------------------------------1.00-----------------------------------------------------------------
.................................CCGGAAGTTGAGCGGCGGCA.....................................................................................................................................................................................................201.000.00---------------------------------1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CTCACTGATTCCGGCTGG........................1811.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------
........................................................................................................GAGGCCTGGAGTCAAGGGGCG.............................................................................................................................2111.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------
..............................................GGCGGTAAGTGAGCCGCGGCGGGCGAGGGGAT............................................................................................................................................................................321.000.00-----------------------------------------1.00---------------------------------------------------------------------------------------
.....................GAGCTGTGGTTGCCGGAAGTTGA..............................................................................................................................................................................................................2311.001.00----------------1.00----------------------------------------------------------------------------------------------------------------
...............CAGAGAGAGCTGTGGTTGC........................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------1.00---------------------------------------
................................GCCGGAAGTTGAGCGGCGGC......................................................................................................................................................................................................2011.002.00---------------------1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................TCTTGCTGGGCCGGTTTTG..................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------------------1.00---------------------------
.......................GCTGTGGTTGCCGGAAGTTGA..............................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------1.00---------------------------------------------------------------
....................................................AAGTGAGCCGCGGCGGGC....................................................................................................................................................................................1811.001.00---------1.00-----------------------------------------------------------------------------------------------------------------------
.....................................AAGTTGAGCGGCGGTAAGTG.................................................................................................................................................................................................2011.001.00------1.00--------------------------------------------------------------------------------------------------------------------------
..........................................................GCCGCGGCGGGCGAGGAA..............................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------1.00----------------------------
................................................CGGTAAGTGAGCCGCGGC........................................................................................................................................................................................1811.001.00--------------------------------------1.00------------------------------------------------------------------------------------------
.....................................................................CGAGGGTGTAGTGGGGTCTTG................................................................................................................................................................2111.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------
...................................GGAAGTTGAGCGGCGGTAAG...................................................................................................................................................................................................2011.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
.................................................................CGGGCGAGGGTGTAGTGAG......................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------1.00-----------------------------------------------
................................GCCGGAAGTTGAGCGGCGGTAAGTGAGC..............................................................................................................................................................................................2811.001.00------1.00--------------------------------------------------------------------------------------------------------------------------
....................AGAGCTGTGGTTGCCGGAAGTTGAGCGGCGG.......................................................................................................................................................................................................3111.001.00---------------------------------1.00-----------------------------------------------------------------------------------------------
...........................................................CCGCGGCGGGCGAGGGTATA...........................................................................................................................................................................201.000.00----------------------------------1.00----------------------------------------------------------------------------------------------
.....................GAGCTGTGGTTGCCGGAAGTTGAGGG...........................................................................................................................................................................................................2611.001.00------------1.00--------------------------------------------------------------------------------------------------------------------
.......................................GTTGAGCGGCGGTAAG...................................................................................................................................................................................................1611.001.00-------------------------------------------------------------------------------------------------------------------------1.00-------
................AGAGAGAGCTGTGGTTAC........................................................................................................................................................................................................................181.000.00------------------------------------------------------------------------------------------1.00--------------------------------------
.......................................GTTGAGCGGCGGTAAGT..................................................................................................................................................................................................1711.001.00----------------------------------------------------------1.00----------------------------------------------------------------------
............................GGTTGCCGGAAGTTGAGCGGC.........................................................................................................................................................................................................2111.001.00------------------------------------1.00--------------------------------------------------------------------------------------------
....................................GAAGTTGAGCGGCGGTA.....................................................................................................................................................................................................1711.001.00----------------------------------------------------------------------------------------------------------1.00----------------------
.......................................GTTGAGCGGCGGTAAGTGA................................................................................................................................................................................................1911.001.00---------------------------------------------------------1.00-----------------------------------------------------------------------
...............CAGAGAGAGCTGTGGTTGCCGG.....................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------------------1.00--------------------------------------------------
.............................................................................................................................................................TCTCAGGATCCTCCTCTGCCAG.......................................................................2211.001.00----------------------------------------------------------------------------------------1.00----------------------------------------
.................................CCGGAAGTTGAGCGGCGGTAA....................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------------------1.00--------------------
.....................GAGCTGTGGTTGCCGGAAGTTGCG.............................................................................................................................................................................................................241.000.00----1.00----------------------------------------------------------------------------------------------------------------------------
............................GGTTGCCGGAAGTTGAGCGG..........................................................................................................................................................................................................2011.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------
.............................................................................................GGCCGGTTTTGGAGGCCTGGAGT......................................................................................................................................2311.001.00-----------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................................................GGAGGCCTGGAGTCAAGG.................................................................................................................................1820.500.50------------------------------------------------------------------------------------------------------------------------------0.50--
...............CAGAGAGAGCTGTGGTTG.........................................................................................................................................................................................................................1820.500.50----------------------------------------------------------0.50----------------------------------------------------------------------
.................................................GGTAAGTGAGCCGCGG.........................................................................................................................................................................................1620.500.50-------------0.50-------------------------------------------------------------------------------------------------------------------
...................GAGAGCTGTGGTTGC........................................................................................................................................................................................................................1560.330.33------------------------------------------------------------0.17------------------------------------------------------------------0.17-
......................................................................................CTTGCTGGGCCGGTTTT...................................................................................................................................................1730.330.33-----------------------------------------------------------0.33---------------------------------------------------------------------
..................AGAGAGCTGTGGTTGC........................................................................................................................................................................................................................1630.330.33----------------------------------------------------------0.33----------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGT....................................................................................................................................................................1630.330.33-------0.33-------------------------------------------------------------------------------------------------------------------------
...........................................................CCGCGGCGGGCGAGGG...............................................................................................................................................................................1650.200.20---------------------0.20-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................GCCAGTTTCTGGGTG.............................................................1570.140.14--------------------------------------------------------------------------------------------------------------------------------0.14

Antisense strand
TCGGGGCGCGCGCCTCAGAGAGAGCTGTGGTTGCCGGAAGTTGAGCGGCGGTAAGTGAGCCGCGGCGGGCGAGGGTGTAGTGGGGTCTTGCTGGGCCGGTTTTGGAGGCCTGGAGTCAAGGGGCGAGCTCGCCAGGGAGGGCGAGGGTCACAGCAAGTCTCAGGATCCTCCTCTGCCAGTTTCTGGGTGGTCCTTCCTCCTCCAGGGACTCACTGATTCCGGCTGGCGCCCTTCGTCTGTAGCCGCGTCC
...........................................................((((.(((........))).)))).(((((.(((((((.........)))))))......)))))..............................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040012(GSM532897)
G648N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR343335SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040017(GSM532902)
G645T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................GAGGGTGTAGTGGGGTAA.................................................................................................................................................................. 1834.000.00--------------------2.00--2.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GCGGCTACAGACGAAGGG.... 1812.002.00------------------------2.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CTCCTCCAGGGACTCT...................................... 161.000.00--------------------------------------------------------------------------------------------------------1.00------------------------
..............................................................................................................................................................CTCAGGATCCTCCTCTGCAC........................................................................ 201.000.00---------------------------------------------------------------------------1.00-----------------------------------------------------
......................................................................................................................................................................................................................................CGCGGCTACAGACGAAG... 1711.001.00----------------------------------------------------------------------------------1.00----------------------------------------------
............................................................CGCGGCGGGCGAGGGACC............................................................................................................................................................................ 181.000.00-----------------------------------------------------------------------------------------------------------------------1.00---------
......................................................................................................................................................................................................................TACAGACGAAGGGCGCCAGCCGGAATC......... 2711.001.00---------------------------------------------------------------------------------------------------------1.00-----------------------
......................................................................GAGGGTGTAGTGGGGAATG................................................................................................................................................................. 191.000.00-------------------------------------------------------------------------------1.00-------------------------------------------------
...............................................................................................................................................................TGGCAGAGGAGGATCCTGA........................................................................ 1911.001.00--------------------------------------------------------------------------------1.00------------------------------------------------
................................................................................................................................................................................TGGAGGAGGAAGGACCACCCAGAAACTG.............................................. 2811.001.00-------------1.00-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................ACTGGCAGAGGAGGATCCTGAGA...................................................................... 2311.001.00---------------------------------------------------------------------------------------------------------------------------1.00-----
.........................TGTGGTTGCCGGAAGTTGT.............................................................................................................................................................................................................. 191.000.00--------------------------------------------------------------------------------------------------------------------------1.00------
..........................................................GCCGCGGCGGGCGAGGGGG............................................................................................................................................................................. 191.000.00---------------------1.00-----------------------------------------------------------------------------------------------------------
......................................................................GAGGGTGTAGTGGGGTAAT................................................................................................................................................................. 1931.000.00--------------------1.00------------------------------------------------------------------------------------------------------------
.......................................GTTGAGCGGCGGTAACAG................................................................................................................................................................................................. 181.000.00--------------------------------------------------------------------------------------1.00------------------------------------------
.......................................................................................................................................................................................................................................ACGCGGCTACAGACGAA.. 1711.001.00-------------------------------------------------------------------------------------------------1.00-------------------------------
..................................................................................................................................................................................................................................CGGCTACAGACGAAGGGCG..... 1911.001.00-----------------------------------------------------------------------------------------------------------1.00---------------------
..............................................................................................................................................................CTCAGGATCCTCCTCTGCACA....................................................................... 211.000.00-------------------------------------------------------------------------1.00-------------------------------------------------------