ID: uc003bro.3_intron_0_0_chr3_9404812_f.5p
GENE: (1)
chr3:9404762-9405011+


(1)
AGO2.ip 		(10)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(35)
CELL-LINE 		(10)
CERVIX 		(4)
HEART 		(3)
HELA 		(4)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCAAGAGGCCAATGGAGTGTGGGAGCTGAAAGGGTCTTCGCTGGCGGCCGGTAACTGGCGGCGGTTGGGAACGGCCGAGTGTGGCTCTTCTGGTGTTTCAGCTTGGGGAGAGAGGGGTGGCCTTCCTCTTGCAGTTGAGGCCGGCGCCGAGCCGGACTTCAGGCGGATCTCGTGGCGGAGCCCATCTTGCTCCCTCTCCCAGGCCTTTACCCGCTCCCTAGGATTCCCGGGCCCTGTAGGTGGGAGTTGG
.......................................................(((((.((((..((((.(((((....))))).))))......((((((..(((((.(((((....))))))))))..)))))).)))).))))).....................................................................................................
..................................................51....................................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
..............GAGTGTGGGAGCTGAAAGGG........................................................................................................................................................................................................................20116.0016.0012.00--4.00-----------------------------------------------------------------------------------------------
.......GCCAATGGAGTGTGGGAGC................................................................................................................................................................................................................................1919.009.002.00---2.00---1.00---------2.00-----1.00-------------------------------------1.00------------------------------------
.....AGGCCAATGGAGTGTGGGAGC................................................................................................................................................................................................................................2118.008.006.00------------------1.00-------------------------------1.00-----------------------------------------------
...........................GAAAGGGTCTTCGCTGGCGG...........................................................................................................................................................................................................2017.007.006.00----1.00---------------------------------------------------------------------------------------------
..........................................................CGGCGGTTGGGAACGGC...............................................................................................................................................................................1717.007.00--5.00--1.00-----------------------------------------------------------------------------1.00---------------
............................................CGGCCGGTAACTGGCGGC............................................................................................................................................................................................1816.006.00--1.00--2.00---2.00-----------------1.00-----------------------------------------------------------------------
................GTGTGGGAGCTGAAAGGG........................................................................................................................................................................................................................1815.005.00----1.00-------------------1.00---------------1.00--------------------------------1.00----------1.00--------------
...............AGTGTGGGAGCTGAAAGGG........................................................................................................................................................................................................................1915.005.004.00-----------------------------------------------------------------1.00--------------------------------
.......................................GCTGGCGGCCGGTAACTGG................................................................................................................................................................................................1915.005.00------------1.00--1.00----------------------1.00-------------------1.001.00---------------------------------------
.....................................................................................................................................GTTGAGGCCGGCGCCGAGCCGGAC.............................................................................................2415.005.00------5.00--------------------------------------------------------------------------------------------
.................................................................................................................................................GCCGAGCCGGACTTCAGG.......................................................................................1815.005.00-4.00----------1.00--------------------------------------------------------------------------------------
.....AGGCCAATGGAGTGTGGG...................................................................................................................................................................................................................................1814.004.00--3.00--------------------------------------------------------------1.00---------------------------------
..............GAGTGTGGGAGCTGAAAGGGT.......................................................................................................................................................................................................................2114.004.00--------------------------2.00-2.00----------------------------------------------------------------------
..........................................................CGGCGGTTGGGAACGGCCGAGTGTGGCTCTTC................................................................................................................................................................3214.004.00--4.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................CGGATCTCGTGGCGGAGCC....................................................................1914.004.00-4.00-------------------------------------------------------------------------------------------------
...AGAGGCCAATGGAGTGTGGG...................................................................................................................................................................................................................................2013.003.003.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................ATCTTGCTCCCTCTCCCAGGCCTTTACCCGCT...................................3212.002.00--------------------------------------------1.00-------------------------------------------1.00----------
..AAGAGGCCAATGGAGTGTGGGA..................................................................................................................................................................................................................................2212.002.00---2.00-----------------------------------------------------------------------------------------------
.....AGGCCAATGGAGTGTGGGAGCTGAAA...........................................................................................................................................................................................................................2612.002.00--------2.00------------------------------------------------------------------------------------------
.....AGGCCAATGGAGTGTGGGA..................................................................................................................................................................................................................................1912.002.00-----------------------1.00----------------------------------------1.00----------------------------------
..........AATGGAGTGTGGGAGCTGAAAGG.........................................................................................................................................................................................................................2312.002.00---1.00-------------------------------------------------------------------------1.00---------------------
......................................CGCTGGCGGCCGGTAACTGGCGGCGGT.........................................................................................................................................................................................2712.002.00-----------------------------------2.00---------------------------------------------------------------
...........ATGGAGTGTGGGAGCTGAAAGGGTCT.....................................................................................................................................................................................................................2612.002.002.00--------------------------------------------------------------------------------------------------
.............................................................CGGTTGGGAACGGCCGAGTGT........................................................................................................................................................................2112.002.00----------------------------------2.00----------------------------------------------------------------
...............AGTGTGGGAGCTGAAAGGGT.......................................................................................................................................................................................................................2012.002.00------------1.00---------------------------------------------------------1.00----------------------------
............................AAAGGGTCTTCGCTGGCGGC..........................................................................................................................................................................................................2012.002.002.00--------------------------------------------------------------------------------------------------
.......GCCAATGGAGTGTGGGAG.................................................................................................................................................................................................................................1822.002.00----0.50---------------------------------------------------------------------------------------0.500.500.50----
.....AGGCCAATGGAGTGTGGGAGCTGA.............................................................................................................................................................................................................................2412.002.00-----------------2.00---------------------------------------------------------------------------------
........................................CTGGCGGCCGGTAACTGG................................................................................................................................................................................................1812.002.00---1.00---------------------------1.00-------------------------------------------------------------------
.........................................................GCGGCGGTTGGGAACGGC...............................................................................................................................................................................1812.002.00--2.00------------------------------------------------------------------------------------------------
.......GCCAATGGAGTGTGGGAGCTGAAAGGGT.......................................................................................................................................................................................................................2812.002.002.00--------------------------------------------------------------------------------------------------
.......................................GCTGGCGGCCGGTAACTG.................................................................................................................................................................................................1812.002.00---------------1.00---------------1.00-------------------------------------------------------------------
................GTGTGGGAGCTGAAAGGGT.......................................................................................................................................................................................................................1912.002.00------------------------------------------------1.00---------------------------------1.00----------------
................GTGTGGGAGCTGAAAGG.........................................................................................................................................................................................................................1721.501.50--------0.50-------------------------------------------1.00----------------------------------------------
..........AATGGAGTGTGGGAGCTGAAA...........................................................................................................................................................................................................................2111.001.00---------------------------------------------------------1.00-----------------------------------------
.................................GTCTTCGCTGGCGGCCGG.......................................................................................................................................................................................................1811.001.00---------1.00-----------------------------------------------------------------------------------------
...........................................................................CGAGTGTGGCTCTTCTGGTG...........................................................................................................................................................2011.001.001.00--------------------------------------------------------------------------------------------------
...............................................CCGGTAACTGGCGGCGGTTGG......................................................................................................................................................................................2111.001.00---1.00-----------------------------------------------------------------------------------------------
..............................AGGGTCTTCGCTGGCGG...........................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------------------------1.00------------
......GGCCAATGGAGTGTGGGAGC................................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------1.00-------------------
.......................................GCTGGCGGCCGGTAACTGGAA..............................................................................................................................................................................................2111.005.00----------------------------------------------1.00----------------------------------------------------
..........AATGGAGTGTGGGAGCTG..............................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------1.00-----------------------------------
..........................................................................................................................................................GACTTCAGGCGGATCTCGTGG...........................................................................2111.001.00---1.00-----------------------------------------------------------------------------------------------
..........................TGAAAGGGTCTTCGCTGGCGG...........................................................................................................................................................................................................2111.001.00----------1.00----------------------------------------------------------------------------------------
....GAGGCCAATGGAGTGTGGGAGC................................................................................................................................................................................................................................2211.001.00---------------------------1.00-----------------------------------------------------------------------
.........................................TGGCGGCCGGTAACTGG................................................................................................................................................................................................1711.001.00-1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................GTTGAGGCCGGCGCCG.....................................................................................................1611.001.00--------------------------------1.00------------------------------------------------------------------
....................................................................................................................................................GAGCCGGACTTCAGGG......................................................................................161.000.00------------------------------------------------------------1.00--------------------------------------
........................................................................................................................................................CGGACTTCAGGCGGATCTCG..............................................................................2011.001.00----------------------------------------------------------------------------1.00----------------------
...........................................................................................................................................................................................................................AGGATTCCCGGGCCCTGTAGGCGGG......251.000.00--------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................GATTCCCGGGCCCTGTAGGCGGG......231.000.00--------------1.00------------------------------------------------------------------------------------
..........AATGGAGTGTGGGAGCTGAAAGGGT.......................................................................................................................................................................................................................2511.001.00----------------1.00----------------------------------------------------------------------------------
......................................................................ACGGCCGAGTGTGGCTCTTCTGGTGTT.........................................................................................................................................................2711.001.00-------------1.00-------------------------------------------------------------------------------------
...AGAGGCCAATGGAGTGTGG....................................................................................................................................................................................................................................1911.001.00--1.00------------------------------------------------------------------------------------------------
...............AGTGTGGGAGCTGAAAGGGAT......................................................................................................................................................................................................................2111.005.00--------------------------------1.00------------------------------------------------------------------
.........................................TGGCGGCCGGTAACTGGC...............................................................................................................................................................................................1811.001.00-----------------1.00---------------------------------------------------------------------------------
............TGGAGTGTGGGAGCTGAAAGG.........................................................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------------------------------
..................GTGGGAGCTGAAAGGGTCTTCGC.................................................................................................................................................................................................................2311.001.00---------------------------------------------------------------------------1.00-----------------------
.........................CTGAAAGGGTCTTCGCTGG..............................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00-----------------------------
............TGGAGTGTGGGAGCTGAAAGGGTCT.....................................................................................................................................................................................................................2511.001.00----------------1.00----------------------------------------------------------------------------------
...................................................TAACTGGCGGCGGTTGGGA....................................................................................................................................................................................1911.001.00---1.00-----------------------------------------------------------------------------------------------
..............................AGGGTCTTCGCTGGCGGC..........................................................................................................................................................................................................1811.001.00--------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CCCGGGCCCTGTAGGTGGGAGTT..2311.001.00-----------------------------------------------------1.00---------------------------------------------
........................................CTGGCGGCCGGTAACTGGC...............................................................................................................................................................................................1911.001.00-------------------------1.00-------------------------------------------------------------------------
.CAAGAGGCCAATGGAGTGTGGGAGC................................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------------------1.00---------
.................................................................................................................................................................................................................CCCGCTCCCTAGGATTCC.......................1811.001.00-----1.00---------------------------------------------------------------------------------------------
....................................................AACTGGCGGCGGTTGGGAACGGCCGAGT..........................................................................................................................................................................2811.001.00-------------------------------------1.00-------------------------------------------------------------
...........................GAAAGGGTCTTCGCTGGCGGCCGGTAACTGGCG..............................................................................................................................................................................................3311.001.00---------------------------------------------1.00-----------------------------------------------------
..............................................................................................................................................GGCGCCGAGCCGGACTTCAGCCGG....................................................................................241.000.00----------1.00----------------------------------------------------------------------------------------
..........AATGGAGTGTGGGAGCTGAAAGGGTC......................................................................................................................................................................................................................2611.001.00----1.00----------------------------------------------------------------------------------------------
...............................................................GTTGGGAACGGCCGAGT..........................................................................................................................................................................1711.001.00------------------------------------------1.00--------------------------------------------------------
...........ATGGAGTGTGGGAGCTGAAAGGGTCTTCG..................................................................................................................................................................................................................2911.001.00-------------------------------------------------------------------1.00-------------------------------
......GGCCAATGGAGTGTGGGAGCTGAAAGGGTC......................................................................................................................................................................................................................3011.001.00------------------------------------------------------------------------------------------1.00--------
........CCAATGGAGTGTGGGAGC................................................................................................................................................................................................................................1811.001.00---1.00-----------------------------------------------------------------------------------------------
.......GCCAATGGAGTGTGGGAGCTGA.............................................................................................................................................................................................................................2211.001.00----------------------1.00----------------------------------------------------------------------------
.......GCCAATGGAGTGTGGGAGCT...............................................................................................................................................................................................................................2011.001.00---------1.00-----------------------------------------------------------------------------------------
..........AATGGAGTGTGGGAGCTGAA............................................................................................................................................................................................................................2011.001.00-------------------------------------------------------1.00-------------------------------------------
..........................................GGCGGCCGGTAACTGGCGG.............................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------1.00--------------------
.......................................GCTGGCGGCCGGTAAATG.................................................................................................................................................................................................181.000.00------------------------------------------------------------------------1.00--------------------------
....GAGGCCAATGGAGTGTGGG...................................................................................................................................................................................................................................1911.001.001.00--------------------------------------------------------------------------------------------------
............................................................................................................................................CCGGCGCCGAGCCGGACTTCAGCCGG....................................................................................261.000.00-------------------------------------------------------------------------------------1.00-------------
.............................AAGGGTCTTCGCTGGCGGCC.........................................................................................................................................................................................................2011.001.00-------------------------------------------1.00-------------------------------------------------------
.......................................................................................................................................................CCGGACTTCAGGCGGATCTCG..............................................................................2111.001.00-----------1.00---------------------------------------------------------------------------------------
.......................AGCTGAAAGGGTCTTCGCTGGCG............................................................................................................................................................................................................2311.001.00-----------------------------------------------1.00---------------------------------------------------
.CAAGAGGCCAATGGAGTGTGG....................................................................................................................................................................................................................................2111.001.00---1.00-----------------------------------------------------------------------------------------------
..AAGAGGCCAATGGAGTGT......................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------1.00---------------------------
.............................AAGGGTCTTCGCTGGCGGC..........................................................................................................................................................................................................1911.001.00-----------1.00---------------------------------------------------------------------------------------
.....AGGCCAATGGAGTGTGGGAGCTGAAAGGGCC......................................................................................................................................................................................................................311.000.00-------------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................GCCGAGCCGGACTTCAGGCGG....................................................................................2111.001.00----------------1.00----------------------------------------------------------------------------------
.............GGAGTGTGGGAGCTGAAGAGC........................................................................................................................................................................................................................211.000.00--------------------------------------------------1.00------------------------------------------------
............................................................GCGGTTGGGAACGGCCGAGTGTGGCTC...................................................................................................................................................................2711.001.00-----------1.00---------------------------------------------------------------------------------------
..................................................................................................................................GCAGTTGAGGCCGGCGCCG.....................................................................................................1911.001.00---------------1.00-----------------------------------------------------------------------------------
................GTGTGGGAGCTGAAATG.........................................................................................................................................................................................................................171.000.00-1.00-------------------------------------------------------------------------------------------------
.....................................................................AACGGCCGAGTGTGGCTCTTCCGG.............................................................................................................................................................241.000.00--------------1.00------------------------------------------------------------------------------------
............................AAAGGGTCTTCGCTGGCGG...........................................................................................................................................................................................................1911.001.00---1.00-----------------------------------------------------------------------------------------------
.........................................TGGCGGCCGGTAACTGGCGG.............................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------1.00------------------------
............TGGAGTGTGGGAGCTGAAAGGGTC......................................................................................................................................................................................................................2411.001.00----1.00----------------------------------------------------------------------------------------------
......................................................................................................................................................GCCGGACTTCAGGCGGATCTC...............................................................................2111.001.00--------------------------------------------------------------------1.00------------------------------
....................................................AACTGGCGGCGGTTGGGAA...................................................................................................................................................................................1911.001.00------------------------------------------------------1.00--------------------------------------------
.....AGGCCAATGGAGTGTGGGAG.................................................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------------1.00-----------------
.......................................GCTGGCGGCCGGTAACTGGCG..............................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------1.00------------------
..................................................GTAACTGGCGGCGGTTGGG.....................................................................................................................................................................................1911.001.001.00--------------------------------------------------------------------------------------------------
............................................................................GAGTGTGGCTCTTCTGGTG...........................................................................................................................................................1911.001.00-------------------1.00-------------------------------------------------------------------------------
............TGGAGTGTGGGAGCTGAAAGGGTCTTCGCCGG..............................................................................................................................................................................................................321.000.00-------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................CGCCGAGCCGGACTTCAG........................................................................................1811.001.00------------------------------1.00--------------------------------------------------------------------
........................................................GGCGGCGGTTGGGAACGGCCG.............................................................................................................................................................................2111.001.00-------------------------------------------------1.00-------------------------------------------------
....................GGGAGCTGAAAGGGTCTT....................................................................................................................................................................................................................1811.001.00----------------------1.00----------------------------------------------------------------------------
...........ATGGAGTGTGGGAGCTG..............................................................................................................................................................................................................................1720.500.50------------------------------------------------------------------------------------------------0.50--
........................................................................................................................CCTTCCTCTTGCAGTTG.................................................................................................................1720.500.50-----------------------------------------------------------------------------------------------0.50---
.........CAATGGAGTGTGGGAG.................................................................................................................................................................................................................................1670.290.29--0.14-0.14----------------------------------------------------------------------------------------------
........CCAATGGAGTGTGGGAG.................................................................................................................................................................................................................................1740.250.25--------------------------------------------------------------------------------------------------0.25
...........ATGGAGTGTGGGAGC................................................................................................................................................................................................................................1580.250.25----0.120.12---------------------------------------------------------------------------------------------
................GTGTGGGAGCTGAAAG..........................................................................................................................................................................................................................1640.250.25--------0.25------------------------------------------------------------------------------------------
.................TGTGGGAGCTGAAAGGG........................................................................................................................................................................................................................1750.200.20-----0.20---------------------------------------------------------------------------------------------
.......GCCAATGGAGTGTGGG...................................................................................................................................................................................................................................1650.200.20-------------------0.20-------------------------------------------------------------------------------

Antisense strand
GCAAGAGGCCAATGGAGTGTGGGAGCTGAAAGGGTCTTCGCTGGCGGCCGGTAACTGGCGGCGGTTGGGAACGGCCGAGTGTGGCTCTTCTGGTGTTTCAGCTTGGGGAGAGAGGGGTGGCCTTCCTCTTGCAGTTGAGGCCGGCGCCGAGCCGGACTTCAGGCGGATCTCGTGGCGGAGCCCATCTTGCTCCCTCTCCCAGGCCTTTACCCGCTCCCTAGGATTCCCGGGCCCTGTAGGTGGGAGTTGG
.......................................................(((((.((((..((((.(((((....))))).))))......((((((..(((((.(((((....))))))))))..)))))).)))).))))).....................................................................................................
..................................................51....................................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
...........................................................................................................................................................................................AGGCCTGGGAGAGGGAGCA............................................ 1918.008.00-6.00---------------------1.00---------1.00-----------------------------------------------------------------
.........................................................................................................................................................................AGCAAGATGGGCTCCGCCACGA........................................................... 2217.007.00-------5.00---------------------2.00---------------------------------------------------------------------
....................................................................................CTGAAACACCAGAAGAG..................................................................................................................................................... 1713.003.00-3.00-------------------------------------------------------------------------------------------------
............................................................................................................................................................................................AAAGGCCTGGGAGAGGGAGC.......................................... 2012.002.002.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTCCCTAGGATTCCCGGGGGC................ 212.000.00---------------------2.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................AGCGGGTAAAGGCCTGGGAG................................... 2012.002.002.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GAGAGGGAGCAAGATGGGCT.................................................... 2012.002.002.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CCCGGGAATCCTAGGGAGCGG................... 2111.001.00------------------------------------1.00--------------------------------------------------------------
...........................................................................................................................................................................................AAAGGCCTGGGAGAGGGAGCA.......................................... 2111.001.00---1.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................................AGGCCTGGGAGAGGGAGC............................................ 1811.001.00-1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................AAGGCCTGGGAGAGGGAGCA........................................... 2011.001.001.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................AGATCCGCCTGAAGTC................................................................................ 1611.001.00--1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................CGGATCTCGTGGCGGAGC..................................................................... 181.000.00--1.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................AGGCCTTTACCCGCTTCC................................ 181.000.00-------------------------------------------------------------------------------------------1.00-------
....................................................................................................................................................................................GCCTGGGAGAGGGAGCAAGATGGG.............................................. 2411.001.00--------------------1.00------------------------------------------------------------------------------
.............................................................................................................................................CGGCGCCGAGCCGGAAAG........................................................................................... 181.000.00---------------------------------------1.00-----------------------------------------------------------
.......................................................................................................................................................GAGATCCGCCTGAAGTCCGG............................................................................... 2011.001.00-----------------------------------------1.00---------------------------------------------------------
...........................................................................................................................................................................................TGCTCCCTCTCCCAGGCCTTTACC....................................... 241.000.001.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................AAGGCCTGGGAGAGGGAGC........................................... 1911.001.00------------------1.00--------------------------------------------------------------------------------
........................................................................................................................................................................GGGAGAGGGAGCAAGATGGGCTCCGCCACGAG.................................................. 3211.001.00--------------------1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................GTAAAGGCCTGGGAGAGGGAGCAA........................................ 2411.001.001.00--------------------------------------------------------------------------------------------------
......................................................................................................................................................................................AGGCCTGGGAGAGGGAGCAAGATG............................................ 2411.001.00--------------------------------------------------------1.00------------------------------------------
.....................................................................................................................................................................................................CCCAGGCCTTTACCCGGGAC................................. 201.000.00-------------------------------------------------------------1.00-------------------------------------
....................................................................................GCTGAAACACCAGAAGAG.................................................................................................................................................... 1811.001.00---1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................AGGGAGCAAGATGGGCTCC....................................................... 1911.001.00---------------------------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................AAGGCCTGGGAGAGGGAG........................................... 1830.670.67------------------------------------0.33------------------------------------------------------------0.33-
...................................................................................................................................................................................................GGGTAAAGGCCTGGGAG...................................... 1720.500.50-------------------0.50-------------------------------------------------------------------------------
..................................................................................................................................................................................GAGGGAGCAAGATGGGCT...................................................... 1830.330.33--------------------------------------------------------------------------------------------0.33------