ID: uc003bqi.2_intron_10_0_chr3_5255208_f.3p
GENE: (11)
chr3:5257314-5257563+


(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(59)
BREAST
(3)
CELL-LINE
(1)
HEART
(1)
HELA
(1)
LIVER
(5)
OTHER
(6)
SKIN
(1)
TESTES

Sense strand
GTAGGAGTTGCCACTGGCACCTAGTGGGAGAGGCAAGGGGTGCTGCTGACCGTCCTGCAGTGTACAGGCAGCTTCCACAACAGTTACTTCCAAACGTCAGTAGTTCACAGGCTGAGAAACCCTGGATTAAGTCATCCAGTCACATTTCCTGAGAGAGCAACATATGAGTTTTTAATTTTCCCTCGTTTTTGTCTTTCTAGTGCAATCGTGTACCTGATGAGAGGAGGTACTCCCTGCCCTTAAAGAGCAT
...........................................................((....(((.((((........)))).)))....))....((.((((.((((.((.((....((((((......)))))))).))...))))...)))).)).........................................................................................
...........................................................60..........................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343335SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR343334SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
................................................................CAGGCAGCTTCCACAGCA........................................................................................................................................................................18119.000.0015.0011.0012.00-13.006.005.005.004.001.001.00-1.001.002.004.002.002.001.00--2.002.001.00-1.001.002.00-2.00--1.002.001.00--1.002.002.001.00----1.001.002.00------1.00-1.00-1.001.00--1.00-1.00-----1.00-----1.00---
...............................................................ACAGGCAGCTTCCACAGC.........................................................................................................................................................................1810.000.004.006.00------------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACAGCCA.......................................................................................................................................................................198.000.00--1.00--2.00----1.00---1.00--1.00---------1.00------------------1.00---------------------------------
................................................................CAGGCAGCTTCCACAGCAA.......................................................................................................................................................................193.000.00--------------------1.00----1.00----------------------------------------------------1.00-
................................................................CAGGCAGCTTCCACATC.........................................................................................................................................................................172.000.00--1.00--------------------------------------------------1.00--------------------------
........................................................................................................................................................................................................TGCAATCGTGTACCTGATGAGAGGA.........................2512.002.00-------------------------------------------2.00------------------------------------
..................................................................................................................................................................................................................TACCTGATGAGAGGAGGTA.....................1912.002.00-----------------------------------------2.00--------------------------------------
................................................................CAGGCAGCTTCCACAGCG........................................................................................................................................................................182.000.00----------------------------1.00----------------------------------------------1.00----
................................................................CAGGCAGCTTCCACAAAAA.......................................................................................................................................................................192.000.00-----------------------1.00-------------------------------------1.00------------------
................................................................CAGGCAGCTTCCACAAAA........................................................................................................................................................................182.000.00----------------------------1.00----------------------------1.00----------------------
................................................................CAGGCAGCTTCCACAGCGA.......................................................................................................................................................................192.000.00----------2.00---------------------------------------------------------------------
.................................................................................................................................................TTCCTGAGAGAGCAACACA......................................................................................191.000.00------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................CAATCGTGTACCTGATGAGAGGAG........................2411.001.00------------------------------------------------1.00-------------------------------
..................................................................................................................................................................................................................TACCTGATGAGAGGAGTGTA....................201.000.00------------------------1.00-------------------------------------------------------
......................................................................................CTTCCAAACGTCAGTAG...................................................................................................................................................1711.001.00------------------------------------------------------------1.00-------------------
......................................................................................................................................................................................................................................TCCCTGCCCTTAAAGTCTT.191.000.00------------------------------------------------------------------------1.00-------
............................................................................................................................................................................................................ATCGTGTACCTGATGAGAGG..........................2011.001.00-----------------------------------------------------------------------1.00--------
......................AGTGGGAGAGGCAAGGGGTGCTGCCG..........................................................................................................................................................................................................261.000.00-----------1.00--------------------------------------------------------------------
................................................................CAGGCAGCTTCCACAGTC........................................................................................................................................................................181.000.00-------------------------------1.00------------------------------------------------
................................................................CAGGCAGCTTCCACAATTA.......................................................................................................................................................................191.000.00---------------------------------------------------1.00----------------------------
..............................................................................................................................................................................................................CGTGTACCTGATGAGAGGAGGT......................2211.001.00----------------------------------------------------1.00---------------------------
...............................................................................................................................................................................................................GTGTACCTGATGAGAGGAGGT......................2111.001.00-----------------------------------1.00--------------------------------------------
...........................................................................................AAACGTCAGTAGTTCACAGGCGAG.......................................................................................................................................241.000.00-----------1.00--------------------------------------------------------------------
............................................................................................................................GATTAAGTCATCCAGGTGT...........................................................................................................191.000.00------------------------1.00-------------------------------------------------------
................................................................................................................................................TTTCCTGAGAGAGCAACATA......................................................................................2011.001.00-----------1.00--------------------------------------------------------------------
....................................................TCCTGCAGTGTACAGGTCTA..................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------1.00--
...................................AGGGGTGCTGCTGACCGTCCTGCGTAC............................................................................................................................................................................................271.000.00------------------------1.00-------------------------------------------------------
...............................................................................................................................................................................TTTTCCCTCGTTTTTG...........................................................1640.250.25-----------0.25--------------------------------------------------------------------

Antisense strand
GTAGGAGTTGCCACTGGCACCTAGTGGGAGAGGCAAGGGGTGCTGCTGACCGTCCTGCAGTGTACAGGCAGCTTCCACAACAGTTACTTCCAAACGTCAGTAGTTCACAGGCTGAGAAACCCTGGATTAAGTCATCCAGTCACATTTCCTGAGAGAGCAACATATGAGTTTTTAATTTTCCCTCGTTTTTGTCTTTCTAGTGCAATCGTGTACCTGATGAGAGGAGGTACTCCCTGCCCTTAAAGAGCAT
...........................................................((....(((.((((........)))).)))....))....((.((((.((((.((.((....((((((......)))))))).))...))))...)))).)).........................................................................................
...........................................................60..........................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343335SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR343334SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
................................................................CAGGCAGCTTCCACACAA........................................................................................................................................................................ 1833.000.004.006.006.00---1.00--1.00---1.00----1.00-1.001.00---1.001.00-1.00--1.00-----1.00------1.001.00---1.00---------------1.00--1.00-----1.00-----
................................................................CAGGCAGCTTCCACACACA....................................................................................................................................................................... 1929.000.004.005.00--3.00-2.002.001.001.00--2.00-----1.003.00--------------1.00-----1.00---1.00----1.00-----------------1.00------------
................................................................CAGGCAGCTTCCACACAGA....................................................................................................................................................................... 1924.000.003.002.001.0017.00-----1.00----------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACAAA....................................................................................................................................................................... 1920.000.00--1.003.002.00----1.00--1.001.00------1.00-1.001.00--1.00---2.00-1.00---------1.00------------1.00----------1.00--1.00----------
................................................................CAGGCAGCTTCCACACAGG....................................................................................................................................................................... 198.000.002.002.001.00--3.00--------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACG......................................................................................................................................................................... 177.000.001.001.001.001.00-1.00--1.00-------1.00---------------------------------------------------------------
................................................................CAGGCAGCTTCCACACAAG....................................................................................................................................................................... 196.000.003.003.00------------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACACC....................................................................................................................................................................... 194.000.003.00-1.00-----------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACATA....................................................................................................................................................................... 193.000.001.00-2.00-----------------------------------------------------------------------------
..............................................................TGTGGAAGCTGCCTGTA........................................................................................................................................................................... 1713.003.00--1.00-------------1.00--------------------------------------------------------1.00------
................................................................CAGGCAGCTTCCACACATT....................................................................................................................................................................... 193.000.002.001.00------------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACGCT....................................................................................................................................................................... 193.000.002.00----1.00--------------------------------------------------------------------------
...........................GAGAGGCAAGGGGTGGG.............................................................................................................................................................................................................. 172.000.00------------------------------------1.00-------------1.00-----------------------------
................................................................CAGGCAGCTTCCACAGGTA....................................................................................................................................................................... 192.000.002.00-------------------------------------------------------------------------------
...........................GAGAGGCAAGGGGTGG............................................................................................................................................................................................................... 162.000.00-----------------------------------1.001.00-------------------------------------------
.............................................................................CAACAGTTACTTCCAGGAA.......................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------1.00
.............................................................................................................GGCTGAGAAACCCTGGACAGC........................................................................................................................ 211.000.00-----------1.00--------------------------------------------------------------------
................................................................CAGGCAGCTTCCACAAAAA....................................................................................................................................................................... 191.000.00-------------1.00------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACCCT....................................................................................................................................................................... 191.000.00--------------1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................GTGTACCTGATGAGATTTG........................ 191.000.00---------------------------------------------------------------1.00----------------
................................................................CAGGCAGCTTCCACACAG........................................................................................................................................................................ 181.000.00------------------------------------------1.00-------------------------------------
................................................................CAGGCAGCTTCCACAGATA....................................................................................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------------
.............................................................GTACAGGCAGCTTCCACATAC........................................................................................................................................................................ 211.000.00-----1.00--------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACAAATA....................................................................................................................................................................... 191.000.00----------1.00---------------------------------------------------------------------
................................................................CAGGCAGCTTCCACAGCGA....................................................................................................................................................................... 191.000.001.00-------------------------------------------------------------------------------
................................................................CAGGCAGCTTCCACACGCC....................................................................................................................................................................... 191.000.00-----1.00--------------------------------------------------------------------------
...............................................................TGTGGAAGCTGCCTGT........................................................................................................................................................................... 1640.750.750.25----0.50--------------------------------------------------------------------------
...............................................................ACAGGCAGCTTCCACAT.......................................................................................................................................................................... 170.250.000.25-------------------------------------------------------------------------------