ID: uc003azw.2_intron_18_0_chr22_41751867_f
GENE: (19)
chr22:41751817-41752007+


(2)
AGO2.ip 		(3)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(3)
HELA 		(4)
LIVER 		(2)
OTHER 		(10)
SKIN 		(1)
XRN.ip

Sense strand
TGTCAGTGAGGCCACTGCCATCCATTCGTAACTTCCCACAGCAATACGATGTGAGCGCTGGGATGGGGGGCTGGGGGTCCCCCAGGAGGCAGCGATGCTTTCCAGCGGGACTCAGAGGATCTCCCCACGCCCACCCCACAGCTCTGCATCCATGCACAGAACGGCCGCAAGTGCCAATATGTGGGGAACTG
.....................................................((.((((....(((((((((((((((((...(((((((....)))))))....)))))...........))))).)))).)))..)))).))..............................................
..................................................51..............................................................................................147..........................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR189783SRR189786SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040034(GSM532919)
G001N. (cervix)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
..............................................................ATGGGGGGCTGGGGGTCCCCCAGGAGGCAGCGATGCTTTCCAGCGGGACTCAGAGGATCTCCCCACG..............................................................67117.0017.0014.00------2.00---------------------------1.00---
..................................................GTGAGCGCTGGGATGGGGGGCTGGGG...................................................................................................................26114.0014.00-9.004.00--------1.00---------------------------
...............................................................TGGGGGGCTGGGGGTCCCCCAGGAGGCAGCGATGCTTTCCAGCGGGACTCAGAGGATCTCCCCACG..............................................................6618.008.008.00--------------------------------------
..................................................GTGAGCGCTGGGATGGGGGGCTGGGGG..................................................................................................................2715.005.00-5.00-------------------------------------
............................TAACTTCCCACAGCAATACG...............................................................................................................................................2013.003.00-2.00----------------------1.00--------------
..................................................GTGAGCGCTGGGATGGGGGGC........................................................................................................................2113.003.00------2.00--------------1.00-----------------
..................................................GTGAGCGCTGGGATGGGGGGCT.......................................................................................................................2212.002.00------------1.00------------------1.00-------
........AGGCCACTGCCATCCAT......................................................................................................................................................................1712.002.00--------2.00------------------------------
..................................................GTGAGCGCTGGGATGGGGGGCTGGGGGC.................................................................................................................2811.005.00---1.00-----------------------------------
..TCAGTGAGGCCACTGCCATC.........................................................................................................................................................................2011.001.00----------------------------------1.00----
..................................................................................................................GAGGATCTCCCCACGCCCACCCCACAGT.................................................281.000.00---------------------------1.00-----------
...........CCACTGCCATCCATTCGTAACTTCCCAC........................................................................................................................................................2811.001.00-1.00-------------------------------------
....................TCCATTCGTAACTTCCCACAGCAATACG...............................................................................................................................................2811.001.00-----------------------------1.00---------
..........................................................TGGGATGGGGGGCTGGGTCG.................................................................................................................201.000.00-------------------1.00-------------------
......................................................GCGCTGGGATGGGGGCG........................................................................................................................171.000.00-----1.00---------------------------------
..................................................GTGAGCGCTGGGATGGGAAA.........................................................................................................................2011.001.00----------1.00----------------------------
.................CCATCCATTCGTAACTTCCCACAG......................................................................................................................................................2411.001.00----1.00----------------------------------
......................................................................................................................ATCTCCCCACGCCCACCCCACAGTC................................................251.000.00---1.00-----------------------------------
..................................................GTGAGCGCTGGGATGGGGGGCTGGTG...................................................................................................................261.000.00-1.00-------------------------------------
........AGGCCACTGCCATCCATT.....................................................................................................................................................................1811.001.00---------1.00-----------------------------
.................CCATCCATTCGTAACTT.............................................................................................................................................................1711.001.00---------------1.00-----------------------
..................................................GTGAGCGCTGGGATGGAAA..........................................................................................................................191.000.00-----------------1.00---------------------
..............................................................ATGGGGGGCTGGGGGTCCC..............................................................................................................1911.001.00----------------------1.00----------------
..............................................................................................................................................TCTGCATCCATGCACAGAACGGCCGCA......................2711.001.00----------------------------1.00----------
.......GAGGCCACTGCCATCCATTCGT..................................................................................................................................................................2211.001.00--------------------------------1.00------
..............................ACTTCCCACAGCAATACGATCTC..........................................................................................................................................231.000.00------------------1.00--------------------
.............ACTGCCATCCATTCGTAACTTCCCACA.......................................................................................................................................................2711.001.00------------------------------1.00--------
..................................................GTGAGCGCTGGGATGGGGGG.........................................................................................................................2011.001.00--------------1.00------------------------
...............................................................TGGGGGGCTGGGGGT.................................................................................................................1501.001.00-----------------------1.00---------------
......................................................................................................................ATCTCCCCACGCCCACCCCACAGTTC...............................................261.000.00---1.00-----------------------------------
.......................................................................................................................TCTCCCCACGCCCACAGTC.....................................................191.000.00----1.00----------------------------------
...............................................................................................................................................CTGCATCCATGCACAGAACGGC..........................2211.001.00--------------------1.00------------------
..................................................GTGAGCGCTGGGATGGG............................................................................................................................1711.001.00-------------1.00-------------------------
..............................................................................................................................................TCTGCATCCATGCACAGAACGG...........................2211.001.00---------------------------------1.00-----
.........................................................CTGGGATGGGGGGCTGGGGG..................................................................................................................2020.500.50------------------------------------0.50--
..............................................................................................................................ACGCCCACCCCACAGCTC...............................................1820.500.50---------0.50-----------------------------
......................................................................................................................................................CATGCACAGAACGGC..........................1530.330.33-------------------------------------0.33-
........................................................GCTGGGATGGGGGGCTG......................................................................................................................1740.250.25--------------------------------------0.25

Antisense strand
TGTCAGTGAGGCCACTGCCATCCATTCGTAACTTCCCACAGCAATACGATGTGAGCGCTGGGATGGGGGGCTGGGGGTCCCCCAGGAGGCAGCGATGCTTTCCAGCGGGACTCAGAGGATCTCCCCACGCCCACCCCACAGCTCTGCATCCATGCACAGAACGGCCGCAAGTGCCAATATGTGGGGAACTG
.....................................................((.((((....(((((((((((((((((...(((((((....)))))))....)))))...........))))).)))).)))..)))).))..............................................
..................................................51..............................................................................................147..........................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR189783SRR189786SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040034(GSM532919)
G001N. (cervix)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
....................................................CCCAGCCCCCCATCCCAGCGCTC.................................................................................................................... 2311.001.00-------------------------1.00-------------
................................................................................................................................................................ACGGCCGCAAGTGCCAAGCTG.......... 211.000.00-----1.00---------------------------------
..................................................................................................................................................................ATTGGCACTTGCGGCC............. 1611.001.00--------------------------1.00------------
....................................................CCCCATCCCAGCGCTC........................................................................................................................... 1611.001.00----------------1.00----------------------