uc003aym.2_intron_4_0_chr22_40642107

ACAAGAAAAGGAAGAAAGAGGATAAAAAGAAAAAAGAAGCCACTCAGAAGGTAGGTTTAATCAGTTAAGTCTGTCTTTTTATCTGCTAGGCATCCAGCATCCAGAACAAGAAACTGTCTTGGCTTGAATATCCGATATCTTTTATTTTTTTTCCTGAGATGGAGTCTTGCTCTGTCACCTAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTACAACCTCCGCTTCCCAGGTTTAAGCGATGCTCCTC
.....................................................................................................(((..(((((.....)))))..)))............................................................................................................................
...................................................................................................100.......................................................157...........................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)

SRR037940(GSM510478)
293cand5_rep2. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR037935(GSM510473)
293cand3. (cell line)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR037943(GSM510481)
293DcrTN. (cell line)

GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)

SRR390723(GSM850202)
total small RNA. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR037939(GSM510477)
293cand5_rep1. (cell line)

SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR189784

SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

GSM532876(GSM532876)
G547T. (cervix)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR029129(GSM416758)
SW480. (cell line)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR189782

SRR037937(GSM510475)
293cand2. (cell line)

SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)

GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)

SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)

SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)

SRR037934(GSM510472)
293cand4_rep3. (cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)

SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

TAX577579(Rovira)
total RNA. (breast)

........................................................................................................AACAAGAAACTGTCTGAG................................................................................................................................

10.00

0.00

2.00

3.00

2.00

1.00

........................................................................................................AACAAGAAACTGTCTGAGT...............................................................................................................................

9.00

0.00

2.00

3.00

2.00

......................................................................................................................................ATATCTTTTATTTTTTTTG.................................................................................................

2.00

0.00

2.00

..........................................CTCAGAAGGTAGGTTTAATCAGTTAAGTCTG.................................................................................................................................................................................

2.00

..................................................................AAGTCTGTCTTTTTATCTGCTAGGCATCCAGC........................................................................................................................................................

2.00

........................................................................................................................................................................................TGGAGTGCAGTGGCGTGATCTTCGA.........................................

2.00

0.00

2.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGCGCG..................................................

2.00

0.00

2.00

...................................................................................................................................................................................TAGGCTGGAGTGCAGTGGCGACCA...............................................

2.00

0.00

2.00

............................................................................................................................................................................TGTCACCTAGGCTGGAGTGCAGTGGCGATCA...............................................

2.00

0.00

2.00

...............................................................................................................................................................TGGAGTCTTGCTCTGTCACCTAGGCTGGGCGC...........................................................

1.00

0.00

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGGCGTGCC...............................................

1.00

0.00

1.00

.................GAGGATAAAAAGAAAAAAGAAGCCACTCAGAAG........................................................................................................................................................................................................

1.00

............................................................................................................................................................................TGTCACCTAGGCTGGAGTGCAGTGCGTG..................................................

1.00

0.00

1.00

.......................................................................................................................................................TCCTGAGATGGAGTCTTGCTCTGCTG.........................................................................

1.00

0.00

1.00

......................................................................................................................................................................................................................ACAACCTCCGCTTCC.....................

1.00

...................................................................................................................................................TTTTTCCTGAGATGGAGTCTTGCACTG............................................................................

1.00

0.00

1.00

...................................................................................................................................................................................TAGGCTGGAGTGCAGTGGCGGTAT...............................................

1.00

0.00

1.00

.....................................................................TCTGTCTTTTTATCTGCTTGTG...............................................................................................................................................................

1.00

0.00

1.00

..AAGAAAAGGAAGAAAGAGGATA..................................................................................................................................................................................................................................

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGCGCC..................................................

1.00

0.00

1.00

...........................................................................................................................................................................CTGTCACCTAGGCTGGAGTGCGGAG......................................................

1.00

0.00

1.00

............................................................................................................AGAAACTGTCTTGGCTTGAATATCC.....................................................................................................................

1.00

........................................................................................................AACAAGAAACTGTCTGAGA...............................................................................................................................

1.00

0.00

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGGCGAA.................................................

1.00

0.00

1.00

............................................................................................................AGAAACTGTCTTGGCTTTAA..........................................................................................................................

1.00

0.00

1.00

......................................................................................................................................................TTCCTGAGATGGAGTCTTGCTCTGCTG.........................................................................

1.00

0.00

1.00

.................................................................................................................................................................................CCTAGGCTGGAGTGCAGTGGCGTGACCCC............................................

1.00

0.00

1.00

.........................................................................................................................................................CTGAGATGGAGTCTTGCTGTG............................................................................

1.00

0.00

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGGCGTGCCC..............................................

1.00

0.00

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGGCGATCT...............................................

1.00

0.00

1.00

...................GGATAAAAAGAAAAAAGAAGCCACTCAGA..........................................................................................................................................................................................................

1.00

...............................................................................................................................................................................CACCTAGGCTGGAGTGCAGTGGGCCA.................................................

1.00

0.00

1.00

...................................................................................................................................................................................TAGGCTGGAGTGCAGTGGCGTGGTCC.............................................

1.00

0.00

1.00

..................AGGATAAAAAGAAAAAAGAAGCCACTCAGAAG........................................................................................................................................................................................................

1.00

............................................................................................................AGAAACTGTCTTGGCTTGGA..........................................................................................................................

1.00

0.00

1.00

..................................................................................................................TGTCTTGGCTTGAATATCCGATATCTT.............................................................................................................

1.00

............................................................................................................AGAAACTGTCTTGGCTTGAA..........................................................................................................................

1.00

................................................................TTAAGTCTGTCTTTTTAT........................................................................................................................................................................

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGGCGATCA...............................................

1.00

0.00

1.00

............................................................................................................................................................................TGTCACCTAGGCTGGAGTGCAGTGTGT...................................................

1.00

0.00

1.00

.................................................................................................................................................................................CCTAGGCTGGAGTGCAGTGGGAAG.................................................

1.00

0.00

1.00

...................................................................................................................................................................................TAGGCTGGAGTGCAGTGGCGGCAG...............................................

1.00

0.00

1.00

..............................................................................................................................................................................TCACCTAGGCTGGAGTGCAGTGCCTG..................................................

1.00

0.00

1.00

...................................................................................................................................................................................TAGGCTGGAGTGCAGTGGCCC..................................................

1.00

0.00

1.00

............................................................................................................................................................................TGTCACCTAGGCTGGAGTGCAGTGGCGGGC................................................

1.00

0.00

1.00

................................................................................................................................................................................................AGTGGCGTGATCTTGGCTCACTACCTCG..............................

1.00

0.00

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGGGCG....................................................

1.00

0.00

1.00

................................................................................................................................................................................ACCTAGGCTGGAGTGCAGTGGGGCT.................................................

1.00

0.00

1.00

..............................................................................................................................................................................TCACCTAGGCTGGAGTGCGAC.......................................................

1.00

0.00

1.00

.....AAAAGGAAGAAAGAGGAT...................................................................................................................................................................................................................................

0.17

..AAGAAAAGGAAGAAAGAGGA....................................................................................................................................................................................................................................

0.17

................AGAGGATAAAAAGAAAAA........................................................................................................................................................................................................................

0.14

..AAGAAAAGGAAGAAAGAGG.....................................................................................................................................................................................................................................

0.11

ACAAGAAAAGGAAGAAAGAGGATAAAAAGAAAAAAGAAGCCACTCAGAAGGTAGGTTTAATCAGTTAAGTCTGTCTTTTTATCTGCTAGGCATCCAGCATCCAGAACAAGAAACTGTCTTGGCTTGAATATCCGATATCTTTTATTTTTTTTCCTGAGATGGAGTCTTGCTCTGTCACCTAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTACAACCTCCGCTTCCCAGGTTTAAGCGATGCTCCTC .....................................................................................................(((..(((((.....)))))..)))............................................................................................................................ ...................................................................................................100.......................................................157...........................................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR387910(GSM843862) antibody for ip: Ago2. (ago2 cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR037944(GSM510482) 293DcrTN_cand5. (cell line)	SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast)	SRR037940(GSM510478) 293cand5_rep2. (cell line)	SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR037935(GSM510473) 293cand3. (cell line)	DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR037943(GSM510481) 293DcrTN. (cell line)	GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela)	DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin)	SRR390723(GSM850202) total small RNA. (cell line)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR037939(GSM510477) 293cand5_rep1. (cell line)	SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR189784	SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver)	SRR029054(GSM402329) MCF7_smallRNAseq. (cell line)	DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line)	GSM532876(GSM532876) G547T. (cervix)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain)	SRR029129(GSM416758) SW480. (cell line)	SRR553573(SRX182779) source: Cerebellum. (Cerebellum)	SRR189782	SRR037937(GSM510475) 293cand2. (cell line)	SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin)	GSM956925F181A(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line)	SRR444052(SRX128900) Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)	SRR191461(GSM715571) 35genomic small RNA (size selected RNA from t. (breast)	SRR037934(GSM510472) 293cand4_rep3. (cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain)	SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin)	SRR330859(SRX091697) tissue: skin psoriatic involveddisease state:. (skin)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver)	SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell)	TAX577579(Rovira) total RNA. (breast)
...................................................................................................................................................................................TAGGCTGGAGTGCAGTGGCGTGTA...............................................	24		7.00	0.00	-	5.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................TGGAGTCTTGCTCTGTCACCTAAAGA.................................................................	26		6.00	0.00	-	6.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................TGGAGTCTTGCTCTGTCACCTAAT...................................................................	24		4.00	0.00	-	4.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................................................AACCTGGGAAGCGGAGGTTG...............	20	0	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................................................GGCTCACTACAACCTCCGCTGGG.....................	23		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................................................GGCTCACTACAACCTCCGCTTGGG....................	24		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................CTAGGTGACAGAGCAAGACTCCATCT....................................................................	26	0	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................................................TGGCTCACTACAACCTCCCAC........................	21		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................AAAGAAAAAAGAAGCCAGGAC............................................................................................................................................................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................GCGGAGGTTGTAGTGAGCCAAG.........................	22	0	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CTGTCACCTAGGCTGGAGTGCAGTGGCGGG.................................................	30		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................GCCTAGGTGACAGAGCAAGACT..................................................................	22	0	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................GGAGTCTTGCTCTGTCACCTTAAA..................................................................	24		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................................................................CCTCCGCTTCCCAGGTTCTG............	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................................................GGCTCACTACAACCTCCGCTTCGGGA..................	26		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
.....................ATAAAAAGAAAAAAGAAGGCA................................................................................................................................................................................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................GGAGTCTTGCTCTGTCACCTAGGCTTG...............................................................	27		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................CTAGGCTGGAGTGCAGTGGCGTGATCTG............................................	28		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................AGTGGCGTGATCTTGGCCG.......................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................................GGAGTGCAGTGGCGTCTCG..............................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................CTTGGCTCACTACAACCTCCGCC........................	23		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................................................ACCTGGGAAGCGGAGGTTG................	19	0	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-