ID: uc002znp.3_intron_0_0_chr22_18560814_f
GENE: (1)
chr22:18560764-18561111+


(1)
AGO2.ip 		(5)
B-CELL 		(4)
BRAIN 		(16)
BREAST 		(28)
CELL-LINE 		(5)
CERVIX 		(2)
FIBROBLAST 		(3)
HEART 		(5)
HELA 		(12)
LIVER 		(2)
OTHER 		(22)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCGGGGCTGGGCGAGCGCAAAGATGTCCGCGCCCGCTGCCGGGAGGCGAGGTGAGTCTTTGATCGTAACCAGGAGCCCGGAGCTGAGGCAGTTCCTGCACGTGTCGCGGGGCCGGAGAAGCTAGGGCCAGGTATTCCAGGGATGCAAGAATCCTGCAAATCTGACGTGTAAACTGCTTCCCCAGCCTCCAGGCGAGCCCAGCTTTTGCCTCAGATAGGCCCCTTCCTTTTCCTTCTCGGGGAATCGACCTCGGGAAGGGGTGTGGGCAAAGAGATGAGGACTCTCCCTCTTCGCCCAGGCCAACTCGGGATATCCCGGAGCCTCTGGGGAGGCGGTCACTCCGACGTC
..........................................................................((((..((((..(((....(((((.......)))))))).....)))).)))).............................................................................................................................................................................................................................
..................................................51...........................................................................128..........................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM339994(GSM339994)
hues6. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR040022(GSM532907)
G575N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)
.CGGGGCTGGGCGAGCGCC.........................................................................................................................................................................................................................................................................................................................................187.000.00------1.00------1.00---1.00--------1.00-------1.00--------------1.00----------1.00------------------------------------------------
.....................................................AGTCTTTGATCGTAACCAG....................................................................................................................................................................................................................................................................................1917.007.002.005.00-----------------------------------------------------------------------------------------------------------
........................................................CTTTGATCGTAACCAGGAGCCCGGAGCTGAGGCAGTTCCTGCACGTGTCGCGGGGCCGGAGAAGCTAGGGCCAGGTATT.....................................................................................................................................................................................................................7916.006.00----6.00--------------------------------------------------------------------------------------------------------
...............................CCCGCTGCCGGGAGGCGAGG.........................................................................................................................................................................................................................................................................................................2015.005.00-----5.00-------------------------------------------------------------------------------------------------------
.............................................................................................................GGCCGGAGAAGCTAGGGC.............................................................................................................................................................................................................................1815.005.00--------5.00----------------------------------------------------------------------------------------------------
...GGGCTGGGCGAGCGCCGCG......................................................................................................................................................................................................................................................................................................................................193.000.00-------1.00-----1.00-----------------------------------------------------------------------------------------1.00-----
....................................TGCCGGGAGGCGAGGTG.......................................................................................................................................................................................................................................................................................................1713.003.00------------------3.00------------------------------------------------------------------------------------------
.CGGGGCTGGGCGAGCGCCGC.......................................................................................................................................................................................................................................................................................................................................203.000.00---------------------------------------------2.00------------------------------------------1.00--------------------
...........................................AGGCGAGGTGAGTCTTTGA..............................................................................................................................................................................................................................................................................................1913.003.00---1.00--------------------------1.00-------------------------------------1.00----------------------------------------
..................................................GTGAGTCTTTGATCGTAACCAGGA..................................................................................................................................................................................................................................................................................2413.003.003.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................AAGAATCCTGCAAATCTGACGTGTA..................................................................................................................................................................................2513.003.00------2.00----------1.00-------------------------------------------------------------------------------------------
........................................................CTTTGATCGTAACCAGG...................................................................................................................................................................................................................................................................................1713.003.00----------------3.00--------------------------------------------------------------------------------------------
..................................................GTGAGTCTTTGATCGTAACCAGGAGC................................................................................................................................................................................................................................................................................2612.002.00----------2.00--------------------------------------------------------------------------------------------------
.........GGCGAGCGCAAAGATGTCCG...............................................................................................................................................................................................................................................................................................................................2012.002.00---2.00---------------------------------------------------------------------------------------------------------
....................................................GAGTCTTTGATCGTAACCAGGA..................................................................................................................................................................................................................................................................................2212.002.00-------------------1.00------------------------1.00----------------------------------------------------------------
.................................................................TAACCAGGAGCCCGGAGC.........................................................................................................................................................................................................................................................................1812.002.00--------------2.00----------------------------------------------------------------------------------------------
...................................................................................................CGTGTCGCGGGGCCGGAGAAGCTAGGGCCAGGC........................................................................................................................................................................................................................332.000.00------------2.00------------------------------------------------------------------------------------------------
............................GCGCCCGCTGCCGGGAGGCGAG..........................................................................................................................................................................................................................................................................................................2212.002.00--------------2.00----------------------------------------------------------------------------------------------
......................................................GTCTTTGATCGTAACCAGGAG.................................................................................................................................................................................................................................................................................2112.002.00----------------------------1.00----------------------------------------------------------1.00---------------------
.....................................................AGTCTTTGATCGTAACCAGGA..................................................................................................................................................................................................................................................................................2112.002.00----------------------1.00-------------------1.00------------------------------------------------------------------
......................................................................AGGAGCCCGGAGCTGAGGCAG.................................................................................................................................................................................................................................................................2112.002.00------1.00---------------------------------------1.00--------------------------------------------------------------
..................................................................AACCAGGAGCCCGGAGCTGAGGCAGTTC..............................................................................................................................................................................................................................................................2812.002.00---------------------------------2.00---------------------------------------------------------------------------
.CGGGGCTGGGCGAGCGCCG........................................................................................................................................................................................................................................................................................................................................192.000.00-------------1.00---------------------------------------------------------------------------------------1.00-------
.......................TGTCCGCGCCCGCTGCC....................................................................................................................................................................................................................................................................................................................1712.002.00---------------------------1.00---------------------------------------1.00-----------------------------------------
...............................................GAGGTGAGTCTTTGATCGTAAC.......................................................................................................................................................................................................................................................................................2212.002.00--------------------------------------------1.00-------------------------------------1.00--------------------------
.CGGGGCTGGGCGAGCG...........................................................................................................................................................................................................................................................................................................................................1612.002.00-------1.00------------------------------------------------------------------------------1.00----------------------
.....................................................AGTCTTTGATCGTAACCAGG...................................................................................................................................................................................................................................................................................2012.002.00---1.00-------------------------------------------------1.00-------------------------------------------------------
..GGGGCTGGGCGAGCGCCGC.......................................................................................................................................................................................................................................................................................................................................1922.000.50-------1.00---0.50------------------------------------0.50------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................CGGAGCCTCTGGGGAGGCGGT............2112.002.00-------1.00----------------------------------------------------------------1.00------------------------------------
......................................................................................................................................................................................................................................................ACCTCGGGAAGGGGTGTGGGCAAA..............................................................................2412.002.00-----------2.00-------------------------------------------------------------------------------------------------
......................................................GTCTTTGATCGTAACCAG....................................................................................................................................................................................................................................................................................1812.002.00-1.00----------------------------------1.00------------------------------------------------------------------------
......................................................GTCTTTGATCGTAACCAGGAGC................................................................................................................................................................................................................................................................................2212.002.002.00------------------------------------------------------------------------------------------------------------
......CTGGGCGAGCGCAAAGATG...................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------1.00----------------------------------------------------------------------------
..................................................................AACCAGGAGCCCGGAGCTGAGGCAGC................................................................................................................................................................................................................................................................261.000.00--1.00----------------------------------------------------------------------------------------------------------
......................................................GTCTTTGATCGTAACCAGGAGCCCG.............................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------------------1.00---------------------------------
.........................................................................................................................................AGGGATGCAAGAATCCTGCAAATCTGACGT.....................................................................................................................................................................................3011.001.00--------------------1.00----------------------------------------------------------------------------------------
................................................................................................................................................................CTGACGTGTAAACTGC............................................................................................................................................................................1611.001.00-----------------------------------------------------------------------------------1.00-------------------------
.............................................................................................................................................................................................................................................................GAAGGGGTGTGGGCAAAGAGATGA.......................................................................2411.001.00--------------------1.00----------------------------------------------------------------------------------------
..................................GCTGCCGGGAGGCGAGGCC.......................................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCCCGGAGCCTCTGGGGAGGCGGCC...........251.000.00-----------------------------------1.00-------------------------------------------------------------------------
..........................................................................................GTTCCTGCACGTGTCGCGGGGC............................................................................................................................................................................................................................................2211.001.00----------------------------------------------------1.00--------------------------------------------------------
................................................................................................................................................CAAGAATCCTGCAAATCTGACGTG....................................................................................................................................................................................2411.001.00-------------------------------------------------------------------------------------------1.00-----------------
......CTGGGCGAGCGCAAAGATGT..................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------1.00--------------------------------------------
..GGGGCTGGGCGAGCGCAAAG......................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................ACCTCGGGAAGGGGTGTGGGCAAAGAGACG........................................................................301.000.00--1.00----------------------------------------------------------------------------------------------------------
......................ATGTCCGCGCCCGCTGCCGGGAGGCGAG..........................................................................................................................................................................................................................................................................................................2811.001.00------------------------------------------------------1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................................TCGCCCAGGCCAACTCGGGATA....................................2211.001.00-----------------------------------------1.00-------------------------------------------------------------------
..............................GCCCGCTGCCGGGAGGCGAG..........................................................................................................................................................................................................................................................................................................2011.001.00---------------------1.00---------------------------------------------------------------------------------------
.................................................................TAACCAGGAGCCCGGAGCTGAG.....................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------------1.00-----------------------
..........................................GAGGCGAGGTGAGTCTTTGA..............................................................................................................................................................................................................................................................................................2011.001.00---------------------------1.00---------------------------------------------------------------------------------
.............................................................................CGGAGCTGAGGCAGTTCCTGCC.........................................................................................................................................................................................................................................................221.000.00---------1.00---------------------------------------------------------------------------------------------------
.............................................................ATCGTAACCAGGAGCCCGGAGCTGA......................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------------------------------------1.00---------------
..................................................GTGAGTCTTTGATCGTAACCAGGAG.................................................................................................................................................................................................................................................................................2511.001.00----------1.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................AGAGATGAGGACTCTCCCTC...........................................................2011.001.00-------------------------------------------------------------------------------------------------1.00-----------
........................................................................GAGCCCGGAGCTGAGGCAGTTTCTG...........................................................................................................................................................................................................................................................251.000.00------------------------------------------------------------------------------------------------1.00------------
.....................................................................................................................................................................................................................................................................GTGGGCAAAGAGATGAGGACT..................................................................2111.001.00----------------------------------------------------------------------------------------------1.00--------------
..................................................................................................................................................................................................................................TTTTCCTTCTCGGGGAATCGACCTCG................................................................................................2611.001.00------------------------------------------------------------------------------------1.00------------------------
..............................................................................................................GCCGGAGAAGCTAGGGCCAGGTATT.....................................................................................................................................................................................................................2511.001.00--------------------------------------------------------1.00----------------------------------------------------
.................................CGCTGCCGGGAGGCGCGCG........................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................AGAATCCTGCAAATCTGACGT.....................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------1.00----------------
........................................................CTTTGATCGTAACCAAGCG.................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------1.00-------------------
.....GCTGGGCGAGCGCAAAGATGTC.................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------1.00------------------------------------------------------------------------------------
......................ATGTCCGCGCCCGCTGCCGG..................................................................................................................................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------------1.00------------------
.........................................GGAGGCGAGGTGAGTCTTTGA..............................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------1.00-----------------------------------
....................AGATGTCCGCGCCCGCTGCCGGGAGGCGAGGCG.......................................................................................................................................................................................................................................................................................................331.000.00--1.00----------------------------------------------------------------------------------------------------------
..........................................GAGGCGAGGTGAGTCTTTGAT.............................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------------1.00--------------------------------------------------
..................................................GTGAGTCTTTGATCGTAACCAGGAGCCC..............................................................................................................................................................................................................................................................................2811.001.00---------------------------------------------------------------1.00---------------------------------------------
......................................................................................................................................................................................................................................................ACCTCGGGAAGGGGTGTGGGCAAAGAGACGAG......................................................................321.000.00---------------------------------------1.00---------------------------------------------------------------------
.................................................GGTGAGTCTTTGATCGTAACCAGGAGCC...............................................................................................................................................................................................................................................................................2811.001.00---------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................AGAGATGAGGACTCTCCCTCTTCGCCCAGGCC...............................................3211.001.00--1.00----------------------------------------------------------------------------------------------------------
...........................CGCGCCCGCTGCCGGGAGGCGAGC.........................................................................................................................................................................................................................................................................................................241.000.00---------------------------------------1.00---------------------------------------------------------------------
..................................GCTGCCGGGAGGCGAGGTGA......................................................................................................................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------1.00------------------------------
..........................................................................................................................................................................................................................................................................................CTCCCTCTTCGCCCAGGCCAACTC..........................................2411.001.00-----------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................GTGGGCAAAGAGATGAGGACTCTG...............................................................241.000.00---1.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................................AATCTGACGTGTAAAC...............................................................................................................................................................................1611.001.00-------------------------------------1.00-----------------------------------------------------------------------
...................................................................ACCAGGAGCCCGGAGCTGAGGCAGCTCC.............................................................................................................................................................................................................................................................281.000.00--1.00----------------------------------------------------------------------------------------------------------
........................................................CTTTGATCGTAACCAGGAGCC...............................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------1.00-------------------------------------------------------------------
.CGGGGCTGGGCGAGCGCAAAGATGTCCGCGCC...........................................................................................................................................................................................................................................................................................................................3211.001.00-------------------------1.00-----------------------------------------------------------------------------------
............................................................GATCGTAACCAGGAGC................................................................................................................................................................................................................................................................................1611.001.00-------------------------1.00-----------------------------------------------------------------------------------
.........................................................................AGCCCGGAGCTGAGGCAG.................................................................................................................................................................................................................................................................1811.001.00------------------------1.00------------------------------------------------------------------------------------
..................................................................AACCAGGAGCCCGGAGCTGAGGCAGTTCCCGC..........................................................................................................................................................................................................................................................321.000.00-----------------------------------1.00-------------------------------------------------------------------------
..GGGGCTGGGCGAGCGCCGCG......................................................................................................................................................................................................................................................................................................................................2021.000.50-----------------------------------------------0.50----------------------------------------------------------0.50--
...........................................................................................................................................................................................................................................................................................................................CGGAGCCTCTGGGGAGGCGGG............211.000.00--------------------------------------------------------------1.00----------------------------------------------
..................................................................................................................................................AGAATCCTGCAAATCTGACGTGTA..................................................................................................................................................................................2411.001.00---------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGACCTCGGGAAGGGGTGTGGGC.................................................................................2311.001.00-------------------------------1.00-----------------------------------------------------------------------------
........................................GGGAGGCGAGGTGAGTCTTTGAT.............................................................................................................................................................................................................................................................................................2311.001.00-----------------1.00-------------------------------------------------------------------------------------------
.............................................................ATCGTAACCAGGAGCCCGG............................................................................................................................................................................................................................................................................1911.001.00----------------------------------------1.00--------------------------------------------------------------------
.CGGGGCTGGGCGAGCGCA.........................................................................................................................................................................................................................................................................................................................................1811.001.00-------------1.00-----------------------------------------------------------------------------------------------
................................CCGCTGCCGGGAGGCGAG..........................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------1.00-------------
........................................................................GAGCCCGGAGCTGAGGCAG.................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00-----------------------------------------------------
.........................................................................................................................................................TGCAAATCTGACGTGTAAACTGCTTCC........................................................................................................................................................................2711.001.00----------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................TGTGGGCAAAGAGATGAGGA....................................................................2011.001.00---------1.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TTTTGCCTCAGATAGGTCT...............................................................................................................................191.000.00--------------------------------1.00----------------------------------------------------------------------------
....................................TGCCGGGAGGCGAGGTGA......................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------1.00---------------------------
........................................................................................................................................................................................................................................................................................................................TCCCGGAGCCTCTGGGGAGGCGGGG...........251.000.00-------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................CGGGGCCGGAGAAGCTAG................................................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------------------------------------
...............................CCCGCTGCCGGGAGGCG............................................................................................................................................................................................................................................................................................................1711.001.00---------------------------------------------------1.00---------------------------------------------------------
...........................................AGGCGAGGTGAGTCTTT................................................................................................................................................................................................................................................................................................1711.001.00-------------------------------------------------------------------------------1.00-----------------------------
..............GCGCAAAGATGTCCGCGCCCGCTGCAA...................................................................................................................................................................................................................................................................................................................271.000.00-----------------------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................................CCAGGCGAGCCCAGCGTG...............................................................................................................................................181.000.00----------------------1.00--------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................CGGAGCCTCTGGGGAGGCGGAG...........221.000.00-----------------------1.00-------------------------------------------------------------------------------------
............................................GGCGAGGTGAGTCTTTGA..............................................................................................................................................................................................................................................................................................1811.001.00------------------------------1.00------------------------------------------------------------------------------
...........................................................................CCCGGAGCTGAGGCAGTTCCTG...........................................................................................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------------1.00----------------------------
....................................................................................................................................................................................................................GATAGGCCCCTTCCTTTTCCT...................................................................................................................2111.001.00--------------------------1.00----------------------------------------------------------------------------------
...........................................AGGCGAGGTGAGTCTTTGATCGTAACCAG....................................................................................................................................................................................................................................................................................2911.001.00---------------------1.00---------------------------------------------------------------------------------------
.....................................GCCGGGAGGCGAGGTGAGT....................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------1.00-----------------------------------------------------------------
.......................................CGGGAGGCGAGGTGAGTCTTTGA..............................................................................................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------1.00-------------------------------
..................................................GTGAGTCTTTGATCGTAACCAGGAGCC...............................................................................................................................................................................................................................................................................2711.001.00---------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................ATCTGACGTGTAAACTGCTTCCCC......................................................................................................................................................................2411.001.00--1.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................ACCTCGGGAAGGGGTGTGGGCAAAGAA...........................................................................271.000.00----------------------------------------1.00--------------------------------------------------------------------
.CGGGGCTGGGCGAGCGCCGT.......................................................................................................................................................................................................................................................................................................................................201.000.00-----------------------------1.00-------------------------------------------------------------------------------
...................................................TGAGTCTTTGATCGTAACCAG....................................................................................................................................................................................................................................................................................2111.001.00---------------1.00---------------------------------------------------------------------------------------------
.CGGGGCTGGGCGAGCTTC.........................................................................................................................................................................................................................................................................................................................................181.000.00---1.00---------------------------------------------------------------------------------------------------------
..........................................GAGGCGAGGTGAGTCTTTG...............................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------1.00------------------------------------------------------------------
..........................................................................................................CGGGGCCGGAGAAGCTAGGGC.............................................................................................................................................................................................................................2111.001.00-------1.00-----------------------------------------------------------------------------------------------------
.CGGGGCTGGGCGAGCGG..........................................................................................................................................................................................................................................................................................................................................1711.002.00--------------------------------------1.00----------------------------------------------------------------------
.......................................................................................................TCGCGGGGCCGGAGAAGCTAGGGCCAGGC........................................................................................................................................................................................................................291.000.00--1.00----------------------------------------------------------------------------------------------------------
.......................................CGGGAGGCGAGGTGAGT....................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------------1.00----------------------------------
.................................CGCTGCCGGGAGGCGAGGTGAGT....................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------------1.00--------------------------------------
..........................................................................................................CGGGGCCGGAGAAGCTAGGGCCAGGTA.......................................................................................................................................................................................................................2711.001.00------------1.00------------------------------------------------------------------------------------------------
...........................................AGGCGAGGTGAGTCTTTG...............................................................................................................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------------------------------------
........GGGCGAGCGCAAAGATGT..................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------------------1.00---------
..............................................................TCGTAACCAGGAGCCCGG............................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------1.00-------------------------------------------
.CGGGGCTGGGCGAGCGCAA........................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------1.00--------------------------------------------------------------------------------------
...........................................AGGCGAGGTGAGTCTTTGATCG...........................................................................................................................................................................................................................................................................................2211.001.001.00------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................CGGAGCCTCTGGGGAGG................1711.001.00------------1.00------------------------------------------------------------------------------------------------
............................................................................................TCCTGCACGTGTCGCGGGGCCGGAGA......................................................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------1.00-------------------------------------
.........................................................TTTGATCGTAACCAGGAGCCCGGAGC.........................................................................................................................................................................................................................................................................2611.001.00----------1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CTCAGATAGGCCCCTTCCT.........................................................................................................................1911.001.00-----------------------------------------------------------1.00-------------------------------------------------
......................................................................................................................................TCCAGGGATGCAAGATCA....................................................................................................................................................................................................181.000.00------------------------------------------------------------------1.00------------------------------------------
.....................................GCCGGGAGGCGAGGTTGT.....................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------------1.00-----------------------------------------------------------------
........................................................................GAGCCCGGAGCTGAGGCA..................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------------------1.00--------
.............................................................................CGGAGCTGAGGCAGTTCCTGCA.........................................................................................................................................................................................................................................................2211.001.00---------1.00---------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................TGTGGGCAAAGAGATGAGGACTCTCCCTC...........................................................2911.001.00---------------------------------------------------------1.00---------------------------------------------------
...............................................................CGTAACCAGGAGCCCGGAGCT........................................................................................................................................................................................................................................................................2111.001.00---------1.00---------------------------------------------------------------------------------------------------
....................................................GAGTCTTTGATCGTAACCAGG...................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------1.00-----------------------------------------------------------------------
..GGGGCTGGGCGAGCGC..........................................................................................................................................................................................................................................................................................................................................1620.500.50---------------------------------------------------------------------------------------------------------0.50---
...................................................................ACCAGGAGCCCGGAGCTGA......................................................................................................................................................................................................................................................................1920.500.50----------------------------------------------0.50--------------------------------------------------------------
..GGGGCTGGGCGAGCGCC.........................................................................................................................................................................................................................................................................................................................................1720.500.50------------------------------------------------------------------------------------------------------------0.50
..................................................................AACCAGGAGCCCGGAGCTGAG.....................................................................................................................................................................................................................................................................2120.500.500.50------------------------------------------------------------------------------------------------------------
.............................................................ATCGTAACCAGGAGCC...............................................................................................................................................................................................................................................................................1620.500.50-----------------------------------------------------------------------------------------------------------0.50-
..GGGGCTGGGCGAGCGCCG........................................................................................................................................................................................................................................................................................................................................1820.500.50-------------------------------------------------0.50-----------------------------------------------------------
........................................................................GAGCCCGGAGCTGAGGC...................................................................................................................................................................................................................................................................1720.500.50-------------------------0.50-----------------------------------------------------------------------------------
...................................................................ACCAGGAGCCCGGAGCTG.......................................................................................................................................................................................................................................................................1830.330.33--------------------------------------------------------------------------------------------------------0.33----
.....................................................................CAGGAGCCCGGAGCTGAG.....................................................................................................................................................................................................................................................................1830.330.33--------------------------------------------------------------------------------------------------------0.33----

Antisense strand
GCGGGGCTGGGCGAGCGCAAAGATGTCCGCGCCCGCTGCCGGGAGGCGAGGTGAGTCTTTGATCGTAACCAGGAGCCCGGAGCTGAGGCAGTTCCTGCACGTGTCGCGGGGCCGGAGAAGCTAGGGCCAGGTATTCCAGGGATGCAAGAATCCTGCAAATCTGACGTGTAAACTGCTTCCCCAGCCTCCAGGCGAGCCCAGCTTTTGCCTCAGATAGGCCCCTTCCTTTTCCTTCTCGGGGAATCGACCTCGGGAAGGGGTGTGGGCAAAGAGATGAGGACTCTCCCTCTTCGCCCAGGCCAACTCGGGATATCCCGGAGCCTCTGGGGAGGCGGTCACTCCGACGTC
..........................................................................((((..((((..(((....(((((.......)))))))).....)))).)))).............................................................................................................................................................................................................................
..................................................51...........................................................................128..........................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM339994(GSM339994)
hues6. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR040022(GSM532907)
G575N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)
...............................CCCGCTGCCGGGAGGGG............................................................................................................................................................................................................................................................................................................ 172.000.00-2.00-----------------------------------------------------------------------------------------------------------
....................................................................................CCCGCGACACGTGCAGGAACTGCCTC.............................................................................................................................................................................................................................................. 2611.001.00---------1.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................CCCTTCCTTTTCCTTTTGA.............................................................................................................. 191.000.00-----------1.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................TCCAGGCGAGCCCAGTTTT............................................................................................................................................... 191.000.00----------------------------------------------------------------------------1.00--------------------------------
......................................................................................................................................................TCCTGCAAATCTGACAA..................................................................................................................................................................................... 171.000.00--------------------------------------1.00----------------------------------------------------------------------
.............................................................................................................................................................................TGCTTCCCCAGCCTCCAT............................................................................................................................................................. 181.000.00----------------------------------1.00--------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................CTGGGCGAAGAGGGAGAG.................................................. 1811.001.00-----------------------------1.00-------------------------------------------------------------------------------
....................................................................................................................................................................................................................................TTCCTTCTCGGGGAAGT....................................................................................................... 171.000.00---------------------------------------------------------------------1.00---------------------------------------
.......................................................................................................................................................................................................................................................................................GCCTGGGCGAAGAGGGAGAGT................................................ 2111.001.00------------------------------------------------1.00------------------------------------------------------------
............................................................................................................GGGCCGGAGAAGCTAATGT............................................................................................................................................................................................................................. 191.000.00------1.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................ATCCCGGAGCCTCTGCGAG.................. 191.000.00-------------------------------1.00-----------------------------------------------------------------------------
.....................................................................................................................................................................GTGTAAACTGCTTCCCCAAGTT................................................................................................................................................................. 221.000.00--------------------------------------------------------------------------------------------------1.00----------
................................................................................................................................................................................................................................GAGGTCGATTCCCCGAGAAGGAAAAGG................................................................................................. 2711.001.00--------------------------------------------------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................................................................................ACTCTCCCTCTTCGCCCAGTT................................................ 211.000.00----------------------------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GAAGGAAAAGGAAGGGGC................................................................................................................. 1820.500.50---------------0.50---------------------------------------------------------------------------------------------