ID: uc002xzp.2_intron_2_0_chr20_57273830_f
GENE: (3)
chr20:57273780-57274302+


(1)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(3)
BREAST
(13)
CELL-LINE
(2)
CERVIX
(1)
HELA
(3)
LIVER
(2)
OTHER
(23)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCATCGTGGACACACCCTGCAATGAGATGAACACCGACACCTTCCTCGAGGTTTGTGGCGTCATCAGGCCGGGGGTGGGACCAGGCTGGGGTGGGTGTCATAGACTCCCAGGAGAGCCAGAGGAAACCTGGGGCTGTCCACACCCTGACGTGGCCAGGGAACCTCAGGGCTGCCCTCGGCGGAGCGCTGCTGTCTGCCGGGCTCCAGGAAGCCTCAGGAAAGGGTGTGTGGGGAGGACAGAGCCTCCTCTTCAAGGCCCCTTGGCAGGACCACAGCCAGAGCTACAGGAAATGAGAGTGTGTGGAGGGTGAGCCCCCTCTTCTGGGTTTCATCACACGCGAAGCTGGCTCCCAAGCCCGGCTCCCCGACGCGGCACAGGCAGCGGTTCATCCCTGGCCCCAGCCTCGGCCTCTCCTGTTTCCAGCCATCTTCATGTGTTGTTGTGCTGTTGTTTTTTCCATGAACATGTCCAGGAGATTAACAAAGTTGGAAAGGAGCTGGGGATCATCCCAACCATCATCCG
..................................................................................................................((((..(((...)))..)))).(((((((((((.....(((((((..((....))...)))).)))..(((.((((((((((((.((((......))))......(((((.((.((..(((((.......)))))..))..))))))))))))....))))).)).))).))))..((....)))))))))..........................................................................................................................................................................................................................
...............................................................................................................112..............................................................................................................................................................................................305........................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189785RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................CCAGAGGAAACCTGGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................1919.000.00-8.00-3.00-------2.00---1.00------1.00-----1.00--1.00-1.00----------------1.00--------
...........................................................................................................................................................................................................................................................................................ACAGGAAATGAGAGTATC..............................................................................................................................................................................................................................18011.001.0011.00----------------------------------------------------------
................................ACCGACACCTTCCTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1819.009.00--8.00--------------------------------------------------1.00-----
.............................................................................................................................................................................................................................GGGTGTGTGGGGAGGACAA...........................................................................................................................................................................................................................................................................................198.000.00-----4.00-4.00---------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAAAGTTGGAAAGGAGCTGGGGATC.................2814.004.00------4.00----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCATCTTCATCAG......................................................................................183.000.00-------------2.00--------------------------------------1.00------
...........................................................................................................................................................................................................................................................................................ACAGGAAATGAGAGTTATT.............................................................................................................................................................................................................................1902.001.00-----------------------------1.00--------------1.00--------------
...................................................................................................................GCCAGAGGAAACCTGGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................202.000.00--------2.00--------------------------------------------------
............CACCCTGCAATGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1612.002.00----------2.00------------------------------------------------
........................................................................................................................................................................................................................GGAAAGGGTGTGTGGATCA................................................................................................................................................................................................................................................................................................192.000.00------------2.00----------------------------------------------
....................................................................................................................CCAGAGGAAACCTGGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................182.000.00-1.00--------------------------------------1.00------------------
........................................................................................................................................................................................................................................................................................................GTGTGTGGAGGGTGAATT.................................................................................................................................................................................................................182.000.00------------------2.00----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAAAGTTGGAAAGGAGCTGGGGA...................2612.002.00---------2.00-------------------------------------------------
.............................................................................................................................................................................CCTCGGCGGAGCGCTGA.............................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------------1.00---------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCTGGGGATCATC..............1711.001.00-----------------1.00-----------------------------------------
.................................................................................................................................................................................GGCGGAGCGCTGCTGAGAG.......................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00----------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCTGGGGATCATCCCA...........2011.001.00-----------------------------------1.00-----------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAGCCTCGGCCTCTCCTGTTT.......................................................................................................2511.001.00--------------1.00--------------------------------------------
............................................................................................................................................................................................................................................................................................CAGGAAATGAGAGTGCTGC............................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00-----------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGAAAGGAGCTGGGGATCATC..............2711.001.00----1.00------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTAACAAAGTTGGAAAGGAG..........................2511.001.00------------------------------1.00----------------------------
.................................................................................CAGGCTGGGGTGGGTGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------1.00--------------------------
....................................................................................................................CCAGAGGAAACCTGGCG......................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---1.00-------------------------------------------------------
.........................GATGAACACCGACACCTTCCTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------------------------1.00------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGCTGTTGTTTTTGTTC...............................................................221.000.00----------------------------------1.00------------------------
....CGTGGACACACCCTGCAATGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----1.00------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTGTTGTGCTGTTGTT......................................................................2011.001.00-------------------1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCATGTGTTGTTCAT..............................................................................181.000.00----------------1.00------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGAAAGGAGCTGG......................1911.001.00----1.00------------------------------------------------------
....................................................................................................................CCAGAGGAAACCTGGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00-------------------------------------------------------
...........................TGAACACCGACACCTTCCTCGAGGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00------------------------------------------------1.00----------
...........................TGAACACCGACACCTTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------1.00--------------------------------------------
............................................................................................................................................................................CCCTCGGCGGAGCGCTGAGA...........................................................................................................................................................................................................................................................................................................................................201.000.00---------------1.00-------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAAGGAGCTGGGGATCATC..............2411.001.00-----------------------1.00-----------------------------------
..............CCCTGCAATGAGATGAACACCGACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----------------1.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGAAAGGAGCTGG......................1811.001.00----1.00------------------------------------------------------
.............................AACACCGACACCTTCCTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------------1.00-------
...........................................................................................................................................................................................................................................................................................ACAGGAAATGAGAGT.................................................................................................................................................................................................................................1501.001.00-----------------------------------------1.00-----------------
..................................................................................................................................................................................................................................................................................................ATGAGAGTGTGTGGAGGGG......................................................................................................................................................................................................................191.000.00-------------------------------------------------1.00---------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTAACAAAGTTGGAAAG.............................2011.001.00------------------------------------1.00----------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGAGCTGGGGAT..................1720.500.50--------------------------------------------------------0.50--
.................................................................................................................................................................................................................................................................................................AATGAGAGTGTGTGGA..........................................................................................................................................................................................................................1640.250.25----------------------------------------------------------0.25
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAAGGAGCTGG......................1660.170.17----0.17------------------------------------------------------

Antisense strand
GCATCGTGGACACACCCTGCAATGAGATGAACACCGACACCTTCCTCGAGGTTTGTGGCGTCATCAGGCCGGGGGTGGGACCAGGCTGGGGTGGGTGTCATAGACTCCCAGGAGAGCCAGAGGAAACCTGGGGCTGTCCACACCCTGACGTGGCCAGGGAACCTCAGGGCTGCCCTCGGCGGAGCGCTGCTGTCTGCCGGGCTCCAGGAAGCCTCAGGAAAGGGTGTGTGGGGAGGACAGAGCCTCCTCTTCAAGGCCCCTTGGCAGGACCACAGCCAGAGCTACAGGAAATGAGAGTGTGTGGAGGGTGAGCCCCCTCTTCTGGGTTTCATCACACGCGAAGCTGGCTCCCAAGCCCGGCTCCCCGACGCGGCACAGGCAGCGGTTCATCCCTGGCCCCAGCCTCGGCCTCTCCTGTTTCCAGCCATCTTCATGTGTTGTTGTGCTGTTGTTTTTTCCATGAACATGTCCAGGAGATTAACAAAGTTGGAAAGGAGCTGGGGATCATCCCAACCATCATCCG
..................................................................................................................((((..(((...)))..)))).(((((((((((.....(((((((..((....))...)))).)))..(((.((((((((((((.((((......))))......(((((.((.((..(((((.......)))))..))..))))))))))))....))))).)).))).))))..((....)))))))))..........................................................................................................................................................................................................................
...............................................................................................................112..............................................................................................................................................................................................305........................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189785RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
............................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTTCCAGCCATTGT............................................................................................ 191.000.00---------------------------------------1.00-------------------
....................................ACACCTTCCTCGAGGTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00--------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TCCCAAGCCCGGCTCCTG............................................................................................................................................................. 181.000.00--------------------------1.00--------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGTGCTGTTGTTTTAAA................................................................. 241.000.00---------------------1.00-------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................CTCCCCGACGCGGCAG................................................................................................................................................... 161.000.00--------------------1.00--------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAGCCTCGGCCTCTCCTTAA........................................................................................................ 241.000.00----------------1.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................CTGGGTTTCATCACATCCC....................................................................................................................................................................................... 191.000.00-------------------------------------1.00---------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGCCATCTTCATGACA..................................................................................... 201.000.00---------------------------1.00-------------------------------
.............................................................................................................................................................................................................................................................................CCACAGCCAGAGCTACATA........................................................................................................................................................................................................................................... 191.000.00---------------------------------------------1.00-------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTTGTGCTGTTGTTTTTTAAA............................................................... 261.000.00-------------------------1.00---------------------------------
............................................................................................................................................................................AGCGCTCCGCCGAGGG............................................................................................................................................................................................................................................................................................................................................... 1611.001.00------------------------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAACATGTCCAGCC................................................ 181.000.00--------------------------------------1.00--------------------
..........................................................................................................................................................................................................................................................................................................................................................................................GGGATGAACCGCTGC.................................................................................................................................. 1520.500.50-------------------0.50---------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................CTCCCCGACGCGGCAGTGG................................................................................................................................................ 190.500.00---------------------------------------------------------0.50-
........................................................................................................................................................................................................................................................................................................................................................................TGCCGCGTCGGGGAG.................................................................................................................................................... 1520.500.50-------------------------------------------------------0.50---
........................................................................................................................................................................................................................................................................................................................................................................CTCCCCGACGCGGCAGTG................................................................................................................................................. 180.500.00------------------------------------------------------0.50----