ID: uc002xro.2_intron_8_0_chr20_44987598_r.3p
GENE: (1)
chr20:44987548-44987797-


(12)
B-CELL
(2)
BRAIN
(2)
BREAST
(22)
CELL-LINE
(2)
CERVIX
(6)
HEART
(1)
KIDNEY
(11)
LIVER
(3)
OTHER
(4)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
AAGCTGGTGTGTTTGGGGAGCTGAAAGGCGCCCAGTGGGGCCAGGTCCTGGAGAGCCTGTGGCTGAGACTGGGAAGACCAGCAGGGCCAGATGAGGCCATGGGAGCCGAAAGAAGGGTGCTGGTCTTTATCAGAAAAGCACTGGAAGCTGCTGAAGGGTTTTAAGCAGTGGCCTGACATGATCAGTTTGTGTTTTAAAAGGTCACTTTGGTGGCAGTTCATGGAGAATAGCTTGAGGTGACAAGACAGCA
.......................................................((.((.(((....(((((((((((((((.((((......)))).......((.......)).))))))))))).))))...))))).))..........................................................................................................
.......................................................56...............................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM532876(GSM532876)
G547T. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038859(GSM458542)
MM386. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................GGCTGAGACTGGGAAAAA............................................................................................................................................................................18070.001.0010.0014.002.005.005.00-3.002.003.003.00-3.00---2.002.00-1.00--1.00-1.001.00-1.00-1.002.00-----1.00--1.00------1.00---1.001.00------1.00----1.00-1.00--
............................................................GGCTGAGACTGGGAAAAAA...........................................................................................................................................................................19058.001.0012.00-9.006.00--1.002.001.00-----2.001.00--1.001.002.001.00-1.001.00-1.002.00--2.00-1.001.00--1.00--1.00-1.00----1.001.001.00---1.00-1.00------1.00---1.00-
............................................................GGCTGAGACTGGGAAAACA...........................................................................................................................................................................1904.001.002.00-------------1.00--------------------------------------1.00-------------
............................................................GGCTGAGACTGGGAAACAA...........................................................................................................................................................................1903.001.001.00---------------------2.00--------------------------------------------
............................................................GGCTGAGACTGGGAAAATC...........................................................................................................................................................................1903.001.00------------3.00------------------------------------------------------
....................................................GAGCCTGTGGCTGAGACTGGGAAGAC............................................................................................................................................................................2613.003.00-------------3.00-----------------------------------------------------
............................................................GGCTGAGACTGGGAAAAC............................................................................................................................................................................1802.001.001.00---------------------------------------1.00--------------------------
................................................................................................................................ATCAGAAAAGCACTGGAAGGG.....................................................................................................212.000.00-----2.00-------------------------------------------------------------
...........................................................................................................................................ACTGGAAGCTGCTGAAGGGTTTT........................................................................................2312.002.00----------2.00--------------------------------------------------------
............................................................GGCTGAGACTGGGAAGACA...........................................................................................................................................................................191.000.001.00------------------------------------------------------------------
.......................................................................................................................................AAGCACTGGAAGCTGCTGA................................................................................................1911.001.00--------------------------------------------------------1.00----------
..........................................................................................................................................................AGGGTTTTAAGCAGTCGGC.............................................................................191.000.00-------------------------------------------1.00-----------------------
.............................................TCCTGGAGAGCCTGTGGCTGAG.......................................................................................................................................................................................2211.001.00-----1.00-------------------------------------------------------------
...........................................................................................................................................ACTGGAAGCTGCTGAAGGGGTTT........................................................................................231.000.00----------1.00--------------------------------------------------------
............................................................GGCTGAGACTGGGAA...............................................................................................................................................................................1501.001.00--------------------------------------------1.00----------------------
......GTGTGTTTGGGGAGCTCATA................................................................................................................................................................................................................................201.000.00----------------1.00--------------------------------------------------
............................................................GGCTGAGACTGGGAAAAT............................................................................................................................................................................1801.001.00----1.00--------------------------------------------------------------
................................................................................................................AAGGGTGCTGGTCTTTTA........................................................................................................................181.000.00------------------------------------------------------------1.00------
........................AAGGCGCCCAGTGGGGCCAGGTCCTGG.......................................................................................................................................................................................................2711.001.00-------------------------1.00-----------------------------------------
..........................................................................................ATGAGGCCATGGGAGCCGAAAGAAGGGTGCC.................................................................................................................................311.000.00-------------------------1.00-----------------------------------------
...............................................................TGAGACTGGGAAGACCAGCAGGGC...................................................................................................................................................................2411.001.00-------------------------------1.00-----------------------------------
................................................TGGAGAGCCTGTGGCTGAGACTGGGAAGAC............................................................................................................................................................................3011.001.00-------------------------------------------------------1.00-----------
............................................................................................................................................................................................................................TGGAGAATAGCTTGAGGTGACAAGACAGCA3011.001.00-------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................................TCATGGAGAATAGCTTGAGGTGA..........2311.001.00------------------------------------------1.00------------------------
.......................................................................................................................................................................................................................................TTGAGGTGACAAGACAGC.1811.001.00-----------------------------------------------------------1.00-------
....................................................................................................GGGAGCCGAAAGAAGGGT....................................................................................................................................1811.001.00-----------------1.00-------------------------------------------------
.....................................................................................................................................AAAAGCACTGGAAGCTGCAGAG...............................................................................................221.000.00-----1.00-------------------------------------------------------------
.AGCTGGTGTGTTTGGGGAGCTGAAAGG..............................................................................................................................................................................................................................2711.001.00----1.00--------------------------------------------------------------
................................................................GAGACTGGGAAGACCGTG........................................................................................................................................................................181.000.00----------------------------1.00--------------------------------------
...............................................................................................................GAAGGGTGCTGGTCTTTAT........................................................................................................................1911.001.00---------------------------------------------------1.00---------------
...........................................................................................................................................................GGGTTTTAAGCAGTGGGTG............................................................................191.000.00----------------------------------1.00--------------------------------
............................................................GGCTGAGACTGGGAAACC............................................................................................................................................................................1801.001.00----------------------------------------------------------1.00--------
.............................................................................................................................................................................TGACATGATCAGTTTGTGTTT........................................................2111.001.00-------------------------------------1.00-----------------------------
.........................................................TGTGGCTGAGACTGGGAAGACCAGCA.......................................................................................................................................................................2611.001.00---------------------------------------------------------------1.00---
.............................................TCCTGGAGAGCCTGTGGCTGAGACTGGG.................................................................................................................................................................................2811.001.00-----1.00-------------------------------------------------------------
.....................................GGGCCAGGTCCTGGAGCGG..................................................................................................................................................................................................191.000.00-----------------1.00-------------------------------------------------
............................................................GGCTGAGACTGGGAAGA.............................................................................................................................................................................1730.330.33------------------------------------------------------------------0.33

Antisense strand
AAGCTGGTGTGTTTGGGGAGCTGAAAGGCGCCCAGTGGGGCCAGGTCCTGGAGAGCCTGTGGCTGAGACTGGGAAGACCAGCAGGGCCAGATGAGGCCATGGGAGCCGAAAGAAGGGTGCTGGTCTTTATCAGAAAAGCACTGGAAGCTGCTGAAGGGTTTTAAGCAGTGGCCTGACATGATCAGTTTGTGTTTTAAAAGGTCACTTTGGTGGCAGTTCATGGAGAATAGCTTGAGGTGACAAGACAGCA
.......................................................((.((.(((....(((((((((((((((.((((......)))).......((.......)).))))))))))).))))...))))).))..........................................................................................................
.......................................................56...............................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM532876(GSM532876)
G547T. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037935(GSM510473)
293cand3. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038859(GSM458542)
MM386. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)