ID: uc002xer.1_intron_6_0_chr20_34575456_f.3p
GENE: C20orf152(7)
chr20:34582760-34583009+


(1)
AGO1.ip
(1)
B-CELL
(5)
BREAST
(15)
CELL-LINE
(5)
HEART
(2)
LIVER
(1)
OTHER
(27)
SKIN
(2)
UTERUS

Sense strand
GAGATTGCCCCATTGCTCTCCAGCGTGGGTGACAAAGTGAGACTCCATCTCAAAAAAAAGAAAAAAGAACCTGAAACCACTTGCATTAAGCAAATAAAACAAAATGGGATAAGATGCAATTAAGAGAGATTTTCTTCAAAGCCTGGCCTACCTGGAGCCTTAGGGGTTAACCCTTTTCCTATGTCCCTTGCTGTGTTCAGGGCAGCTGTGAAGTCCTGCGGCTGTTGGACCTTGGGGCCTCCCCTTCCTA
............................................................................(((.((((.....))))...........((((...((..((....((((((...))))))....))))..))))..)))......(((((....)))))...........................................................................
.........................................................58.....................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
..............................................................AAAAGAACCTGAAACCATACG.......................................................................................................................................................................2114.000.00-11.00-------------1.00----------------1.00-----1.00-------------------------
...............................................................AAAGAACCTGAAACCGTGT........................................................................................................................................................................1910.000.00------2.001.00-----1.00--1.00------1.001.00-----1.00--1.00------1.00-----------------------
..........................................................................................................................................................................................................................CGGCTGTTGGACCTTGA...............175.000.00---1.00-----1.00---------------1.00-1.00---------1.00--------------------------
.............................................................AAAAAGAACCTGAAACCGTGT........................................................................................................................................................................2133.331.67------0.33------------------------------------0.670.67-----0.330.33-0.330.330.33--------
.............................................................AAAAAGAACCTGAAACCGT..........................................................................................................................................................................1933.001.67-------------1.001.67------------------------------0.33------------------
..............................................................AAAAGAACCTGAAACCATG.........................................................................................................................................................................192.000.00----------2.00-----------------------------------------------------
.........................................................................................................................................................................................................................GCGGCTGTTGGACCTTGA...............182.000.00----1.00------1.00----------------------------------------------------
...............................................................AAAGAACCTGAAACCGC..........................................................................................................................................................................172.000.00-----------------1.00----1.00-----------------------------------------
.............................................................AAAAAGAACCTGAAACC............................................................................................................................................................................1731.671.67----------------0.330.33------------------------0.33----0.33-0.33--------------
..............................................................AAAAGAACCTGAAACCGT..........................................................................................................................................................................1861.330.67-------0.50-0.17--------0.17-----------------------0.17-----------------0.17-0.17-
...............................................................AAAGAACCTGAAACCCTG.........................................................................................................................................................................181.000.00-----------1.00----------------------------------------------------
...............................ACAAAGTGAGACTCCTCAG........................................................................................................................................................................................................191.000.00-----------------------------------------1.00----------------------
...............................................................AAAGAACCTGAAACCATGC........................................................................................................................................................................191.000.00---------------------1.00------------------------------------------
....................................................................................................................................................TACCTGGAGCCTTAGGGGTTAACCC.............................................................................2511.001.00-----1.00----------------------------------------------------------
..............................................................AAAAGAACCTGAAACCATAC........................................................................................................................................................................201.000.00----------------------------1.00-----------------------------------
...............................................................AAAGAACCTGAAACCATACG.......................................................................................................................................................................201.000.00-------------------------------1.00--------------------------------
..............................................................AAAAGAACCTGAAACCATGC........................................................................................................................................................................201.000.00----1.00-----------------------------------------------------------
.............................................................AAAAAGAACCTGAAACCATAC........................................................................................................................................................................2121.000.50------------------------------------1.00---------------------------
..............................................................AAAAGAACCTGAAACCATGCG.......................................................................................................................................................................211.000.00---------1.00------------------------------------------------------
..............................................................AAAAGAACCTGAAACCACGC........................................................................................................................................................................201.000.00--------------------------1.00-------------------------------------
................................................................AAGAACCTGAAACCATACG.......................................................................................................................................................................191.000.00---1.00------------------------------------------------------------
.............................................................AAAAAGAACCTGAAACCGTG.........................................................................................................................................................................2031.001.67------0.33-0.33------0.33------------------------------------------------
.................................................................................................................................................................................................TGTTCAGGGCAGCTGTGGTA.....................................201.000.00-----------------------------1.00----------------------------------
.................................................................AGAACCTGAAACCACGCGC......................................................................................................................................................................191.000.00------------1.00---------------------------------------------------
...............................................................AAAGAACCTGAAACCATGTG.......................................................................................................................................................................201.000.00-------1.00--------------------------------------------------------
...............................................................AAAGAACCTGAAACCACGCGC......................................................................................................................................................................211.000.00---1.00------------------------------------------------------------
...............................................................AAAGAACCTGAAACCCTGC........................................................................................................................................................................191.000.00-----1.00----------------------------------------------------------
...............................................................AAAGAACCTGAAACCGT..........................................................................................................................................................................171.000.00------------------1.00---------------------------------------------
............................................................AAAAAAGAACCTGAAACC............................................................................................................................................................................1811.001.00--------------------1.00-------------------------------------------
..........................................................................................................................................................................................................................CGGCTGTTGGACCTTGACCC............201.000.00-------------------1.00--------------------------------------------
................................................................AAGAACCTGAAACCATGC........................................................................................................................................................................181.000.00------------1.00---------------------------------------------------
..............................................................AAAAGAACCTGAAACCGTG.........................................................................................................................................................................1960.830.67------------------------------------------0.17--0.17-0.17--------0.17-0.17-----
..............................................................AAAAGAACCTGAAACC............................................................................................................................................................................1660.670.67-------0.17---------------------------------------------------0.17-0.17-0.17
.............................................................AAAAAGAACCTGAAACCA...........................................................................................................................................................................1820.500.50----------------------------------------------0.50-----------------
...........................................................GAAAAAAGAACCTGAAAC.............................................................................................................................................................................1820.500.50------------------------------------------------0.50---------------
..............................................................AAAAGAACCTGAAACCG...........................................................................................................................................................................1760.330.67----------------------------------------------------0.33-----------
..............................................................AAAAGAACCTGAAACCGTGT........................................................................................................................................................................2060.330.67------------------------------------------0.17--------------0.17------
..............................................................AAAAGAACCTGAAACCGCAT........................................................................................................................................................................2060.170.67---0.17------------------------------------------------------------
..............................................................AAAAGAACCTGAAACCGTGA........................................................................................................................................................................2060.170.67-------------------------------------------0.17--------------------

Antisense strand
GAGATTGCCCCATTGCTCTCCAGCGTGGGTGACAAAGTGAGACTCCATCTCAAAAAAAAGAAAAAAGAACCTGAAACCACTTGCATTAAGCAAATAAAACAAAATGGGATAAGATGCAATTAAGAGAGATTTTCTTCAAAGCCTGGCCTACCTGGAGCCTTAGGGGTTAACCCTTTTCCTATGTCCCTTGCTGTGTTCAGGGCAGCTGTGAAGTCCTGCGGCTGTTGGACCTTGGGGCCTCCCCTTCCTA
............................................................................(((.((((.....))))...........((((...((..((....((((((...))))))....))))..))))..)))......(((((....)))))...........................................................................
.........................................................58.....................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.................................AAAGTGAGACTCCATCTCGCC.................................................................................................................................................................................................... 212.000.00--2.00-------------------------------------------------------------
....................................................AAAAAAAGAAAAAAGAACCTGTC............................................................................................................................................................................... 232.000.002.00---------------------------------------------------------------
........................................................................................................................................................................................................................................TGGGGCCTCCCCTTCCTAG 191.000.001.00---------------------------------------------------------------
......................................GAGACTCCATCTCAAAAAAAAGAAAACAG....................................................................................................................................................................................... 291.000.00---------------------------------------1.00------------------------
...............................................................................................................................................AAGGCTCCAGGTAGGCCA......................................................................................... 1811.001.00-----------------------------------1.00----------------------------
........................................GACTCCATCTCAAAAAAAAGAAAAAACTGA.................................................................................................................................................................................... 301.000.00--1.00-------------------------------------------------------------
....................................................AAAAAAAGAAAAAAGAACCGGC................................................................................................................................................................................ 221.000.001.00---------------------------------------------------------------
...................................................AAAAAAAAGAAAAAAGAACCTCGAC.............................................................................................................................................................................. 251.000.001.00---------------------------------------------------------------
...................................AGTGAGACTCCATCTCAAAAAAAAGAAAAAA........................................................................................................................................................................................ 311.000.00--1.00-------------------------------------------------------------
......................................................AAAAAGAAAAAAGAACCTGCC............................................................................................................................................................................... 211.000.001.00---------------------------------------------------------------
.................................................................................................................ATGCAATTAAGAGAGAA........................................................................................................................ 171.000.00----------------------------------1.00-----------------------------
.................GTCACCCACGCTGGAG......................................................................................................................................................................................................................... 1601.001.00--------1.00-------------------------------------------------------
............................................................................................................................................................................CTTTTCCTATGTCCCTGT............................................................ 181.000.00----1.00-----------------------------------------------------------
...................................................AAAAAAAAGAAAAAAGAACCTTCT............................................................................................................................................................................... 241.000.001.00---------------------------------------------------------------
..............GCTCTCCAGCGTGGGTGTCTG....................................................................................................................................................................................................................... 211.000.00-----1.00----------------------------------------------------------
.........................TGGGTGACAAAGTGAGACTCCATCTCGGC.................................................................................................................................................................................................... 291.000.00--------1.00-------------------------------------------------------
.............................................CATCTCAAAAAAAAGAAAACCAG...................................................................................................................................................................................... 231.000.001.00---------------------------------------------------------------
....................................................AAAAAAAGAAAAAAGAACCTGGCG.............................................................................................................................................................................. 241.000.00--1.00-------------------------------------------------------------
......................................................AAAAAGAAAAAAGAACCTAGG............................................................................................................................................................................... 211.000.001.00---------------------------------------------------------------
...................................................AAAAAAAAGAAAAAAGAACCTTTTC.............................................................................................................................................................................. 251.000.001.00---------------------------------------------------------------
.......................................AGACTCCATCTCAAAAAAAAGAAAAAAGTC..................................................................................................................................................................................... 301.000.001.00---------------------------------------------------------------
...................................................AAAAAAAAGAAAAAAGAACCTTTG............................................................................................................................................................................... 241.000.00--1.00-------------------------------------------------------------
................................................CTCAAAAAAAAGAAAAAACGTT.................................................................................................................................................................................... 221.000.001.00---------------------------------------------------------------
.........CCCACGCTGGAGAGCAATGG............................................................................................................................................................................................................................. 2070.140.14--------------------------------------------------------0.14-------
................................................GTTCTTTTTTCTTTTTTTTGAG.................................................................................................................................................................................... 2280.120.120.12---------------------------------------------------------------