ID: uc002xbj.2_intron_1_0_chr20_33591420_r
GENE: (3)
chr20:33591370-33591725-


(2)
AGO1.ip 		(3)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(3)
HELA 		(7)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCAGCCCTGCCTGGGACGGACCTTCCGGAAGGAGTGATGCTTGAGCCCAGGTCTGGACAGGGACAGGTGTTGTTGCCTCAGGTGGGGTGGGAGGTGGGCGTGGGGAAGAGGAAGGTGCTCAGTCAGGAAACTGGGGCTGCTGGGGGCCCCCTTCCCCCAGTCCTATCTCACCTCTGTGCAGGGAGAGCTCTGTGGGTGGCCCGAGGCCTGGGGCCACTCTCCTCCCTGCCTGATGGCTACCCAGGTTCACCAGGGGCCACTGGGGCTCCCACCAGCCCCTGACCCTGTGGGCCTGTGGCCTTGCAGGAGAACGTCAGCTGCCTCAACACCAGCCTGGTGATCCTGATGCTGGCCCG
.................................................................................................(((.((((..((((.(((.((((...(((....))))))).((((((((.......))))))))))).)))).)))))))((((((((........(((((((((........)))))))))..))))))))(((..((((((..(((..((.(((((..((..((((((......)))))))).)))))))..)))))))))...)))..................................................
.................................................................................................98..............................................................................................................................................................................................................306................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGC.........................................................2018.008.002.00----1.00---1.00----------1.00-------1.00--------------------1.00---1.00-----
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCCT.......................................................2215.005.00-3.00--------------2.00------------------------------------------
................................................................................................................................................................................................................................................................................................................AGGAGAACGTCAGCTGCC..................................1813.003.00------1.00-----------------1.00------------1.00---------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCTT.......................................................2212.008.00------------1.00--------1.00-------------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCCA.......................................................2212.002.00-----------2.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGAGA.......................................................2222.001.00-2.00---------------------------------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCC........................................................2112.002.00---------1.00-----1.00-------------------------------------------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGGCAT.......................................................2312.002.00----1.00------------------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGGC.........................................................2112.002.001.00-----------------------------1.00----------------------------
........................................................................................................................................................................................................................................................................................GACCCTGTGGGCCTGTGGC.........................................................1921.501.50----1.50------------------------------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCAT.......................................................2211.008.00------------1.00----------------------------------------------
.......................TCCGGAAGGAGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................2011.001.00-------------------------------1.00---------------------------
......................................................................................................GGGAAGAGGAAGGTGCCTC...........................................................................................................................................................................................................................................191.000.00--------------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGG..........................................................1921.001.00------------------------------------------------1.00----------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGGCTA.......................................................2311.002.00---------------1.00-------------------------------------------
...............................................................................................................................................................................................................CTGGGGCCACTCTCCACCA..................................................................................................................................191.000.00----------------------------------1.00------------------------
.................................................................................................................................................................................GCAGGGAGAGCTCTGTGGGGTGT............................................................................................................................................................231.000.00---------------------------------------------------1.00-------
................................................................................................................................................................................................................................................................................................GGGCCTGTGGCCTTGCAGGAGAATG...........................................251.000.00--1.00--------------------------------------------------------
................................................AGGTCTGGACAGGGACAGGT................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------1.00------------
................................................................................................................................................................................................................................................................................................................AGGAGAACGTCAGCTGCCTCAA..............................2211.001.00-------1.00---------------------------------------------------
........................................................................................................GAAGAGGAAGGTGCTCAGTCAGGAAACG................................................................................................................................................................................................................................281.000.00--------------------------------------------------1.00--------
................................................................................................................................................................................................................................................................................................................AGGAGAACGTCAGCTGCCT.................................1911.001.00-------1.00---------------------------------------------------
.........................CGGAAGGAGTGATGCTTGAGCCCAGGTCTGGA...........................................................................................................................................................................................................................................................................................................3211.001.00-----1.00-----------------------------------------------------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGG..........................................................2011.001.00-------------------1.00---------------------------------------
.................................................................................................................................................................................GCAGGGAGAGCTCTGTCGG................................................................................................................................................................191.000.00---------------------------------------------1.00-------------
............GGGACGGACCTTCCGGAAGGAGT.................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------1.00------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AGCCTGGTGATCCTGATGCTGGC...2311.001.00----------1.00------------------------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCATAC.....................................................2411.008.001.00----------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................CAGGAGAACGTCAGCTGCCTCAA..............................2311.001.00-------------1.00---------------------------------------------
...................................................................................................GTGGGGAAGAGGAAGGTGCCTG...........................................................................................................................................................................................................................................221.000.00----------------------------------------------------1.00------
..................................................................................TGGGGTGGGAGGTGGGTTTG..............................................................................................................................................................................................................................................................201.000.00------------------------------------1.00----------------------
........................................................................................................................................................................CACCTCTGTGCAGGGAGAGC........................................................................................................................................................................2011.001.00---1.00-------------------------------------------------------
..................................................................................................................................................................................................................GGGCCACTCTCCTCCCTGCCTGATGGC.......................................................................................................................2711.001.00--------------------------1.00--------------------------------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGGCCTTGC....................................................2611.001.00------------------------------------------1.00----------------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGGCAA.......................................................2311.002.00----------------------------------------1.00------------------
.......................TCCGGAAGGAGTGATGCTTGAGCCC....................................................................................................................................................................................................................................................................................................................2511.001.00--------1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGAC.........................................................201.000.001.00----------------------------------------------------------
............................................................................................................................................................................................................................................................................................CTGTGGGCCTGTGGCCTTGC....................................................2011.001.00----------1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................TGGGCCTGTGGCCTTGCAG..................................................1911.001.00-----------------------------1.00-----------------------------
.................................................................................GTGGGGTGGGAGGTGGG..................................................................................................................................................................................................................................................................1701.001.00-----------------------------------------1.00-----------------
......................................................................................................................................................................................................................................................................................CTGACCCTGTGGGCCTGTGGCCA.......................................................231.000.00-------------------------1.00---------------------------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCT........................................................2111.008.00---------------------------1.00-------------------------------
................................................................................................................................................................................................................TGGGGCCACTCTCCTCCCTG................................................................................................................................2011.001.00---1.00-------------------------------------------------------
...................................................................................................GTGGGGAAGAGGAAGGTGCTCAG..........................................................................................................................................................................................................................................2311.001.00-----------------------------------------------1.00-----------
.......................................................................................................................CAGTCAGGAAACTGGGGC...........................................................................................................................................................................................................................1811.001.00-----------------1.00-----------------------------------------
.........................................TGAGCCCAGGTCTGGACAG........................................................................................................................................................................................................................................................................................................1911.001.00--1.00--------------------------------------------------------
..............................................................................................TGGGCGTGGGGAAGAGGAAGGTGC..............................................................................................................................................................................................................................................2411.001.00-----------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................................................................CCTGACCCTGTGGGCCTGTGGAAA.......................................................241.000.00---------------------------------1.00-------------------------
..................................................GTCTGGACAGGGACAGGTGTTGTTA.........................................................................................................................................................................................................................................................................................251.000.00--------------------------------------------1.00--------------
.......................................................................................................................................................................................................................................................................................TGACCCTGTGGGCCTGTGGCCTT......................................................2311.001.001.00----------------------------------------------------------
....................................................CTGGACAGGGACAGGTGTT.............................................................................................................................................................................................................................................................................................1911.001.00------1.00----------------------------------------------------
..........................................................................................................................................................................................................................CTCCTCCCTGCCTGAATC........................................................................................................................181.000.00------------------1.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................CAGGAGAACGTCAGCTGCCT.................................2011.001.00--------------1.00--------------------------------------------
.................................................GGTCTGGACAGGGACAGGTGTT.............................................................................................................................................................................................................................................................................................2211.001.00--1.00--------------------------------------------------------
..............................................................................................................................................................................TGTGCAGGGAGAGCTCTG....................................................................................................................................................................1820.500.50---0.50-------------------------------------------------------
.............................................................................................................................................................................................................................................................................................TGTGGGCCTGTGGCCTT......................................................1730.330.33------------------------------------------------------0.33----
.................................................................................................................................ACTGGGGCTGCTGGGG...................................................................................................................................................................................................................1680.120.12--------------------------------------------------------0.12--
............................................................................................................................................................................................................................................................................................CTGTGGGCCTGTGGCC........................................................1690.110.11----------------------------------------------------------0.11

Antisense strand
CCAGCCCTGCCTGGGACGGACCTTCCGGAAGGAGTGATGCTTGAGCCCAGGTCTGGACAGGGACAGGTGTTGTTGCCTCAGGTGGGGTGGGAGGTGGGCGTGGGGAAGAGGAAGGTGCTCAGTCAGGAAACTGGGGCTGCTGGGGGCCCCCTTCCCCCAGTCCTATCTCACCTCTGTGCAGGGAGAGCTCTGTGGGTGGCCCGAGGCCTGGGGCCACTCTCCTCCCTGCCTGATGGCTACCCAGGTTCACCAGGGGCCACTGGGGCTCCCACCAGCCCCTGACCCTGTGGGCCTGTGGCCTTGCAGGAGAACGTCAGCTGCCTCAACACCAGCCTGGTGATCCTGATGCTGGCCCG
.................................................................................................(((.((((..((((.(((.((((...(((....))))))).((((((((.......))))))))))).)))).)))))))((((((((........(((((((((........)))))))))..))))))))(((..((((((..(((..((.(((((..((..((((((......)))))))).)))))))..)))))))))...)))..................................................
.................................................................................................98..............................................................................................................................................................................................................306................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................CCCCCAGTCCTATCTGATA........................................................................................................................................................................................ 191.000.00--------1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................................TGGCCTTGCAGGAGAAGAA.......................................... 191.000.00--1.00--------------------------------------------------------
..........................................................................................................................................................CCCCAGTCCTATCTCACCTTCAG................................................................................................................................................................................... 231.000.00--------------------------------------1.00--------------------
..................................................................................................................................................TAGGACTGGGGGAAGGGGG............................................................................................................................................................................................... 1911.001.00-------------1.00---------------------------------------------
.................................................................................................................................................GATAGGACTGGGGGAAGGGGGC............................................................................................................................................................................................. 2211.001.00---------------------------------------1.00-------------------
...................................................................................................................................................GATAGGACTGGGGGAAGGGG............................................................................................................................................................................................. 2011.001.00-------------------------------------------1.00---------------
..........................................................................................................................................................................................................GAGGCCTGGGGCCACTCCGC...................................................................................................................................... 201.000.00--------------1.00--------------------------------------------
...................ACTCCTTCCGGAAGGT................................................................................................................................................................................................................................................................................................................................. 1620.500.500.50----------------------------------------------------------
................................................................................................................................................................................................................................................CCCTGGTGAACCTGG..................................................................................................... 1550.200.20-------------------------------------------------------0.20---
...............................................................................................................................................................................................................................................CCTGGTGAACCTGGG...................................................................................................... 1590.110.11---------------------------------------------------------0.11-