ID: uc002wsf.1_intron_13_0_chr20_21319727_f.3p
GENE: XRN2(14)
chr20:21321159-21321408+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(24)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(2)
SKIN 		(3)
UTERUS

Sense strand
GCTATTGTTTAGAAGGTATAAGTTACCATCAAATCAAAGTGTAGACAACCTTGTAATATTAACGAAGATCATTTGGTTTTTTAGTGAGTTTTGTAAAGTGCTTACAGTTTGGACTTTATTCCATTGCCCTTCTTTCCTTTCTGTCATCTAACTGTGTTGTGATTTAATTTTAATTTCTACATTCATTCCATTTATGTTAGAGAGATCAACCAGCTTTCACTCCTAGTGGAATATTAACTCCTCATGCCTT
.............................................................................................((((..((.(((((((..(((............................)))....)))))))..))..))))....................................................................................
........................................................................................89........................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR189782SRR189786SRR189787SRR343335SRR343334SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189783SRR343336SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR343337TAX577738(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191508(GSM715618)
152genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
.............................................................................................TAAAGTGCTTACAGTGCAG..........................................................................................................................................19797.000.00381.00123.0089.0056.0020.0028.0027.0013.0017.001.004.001.001.003.002.003.003.002.003.00-3.001.00-2.002.00-1.00--1.00--1.00--1.00--1.001.00-1.001.00---1.001.00--1.00---1.00-----
.............................................................................................TAAAGTGCTTACAGTGTAG..........................................................................................................................................1921.000.002.002.0011.00-2.001.001.00--------------------------1.00----------1.00---------------
.............................................................................................TAAAGTGCTTACAGTTCAGG.........................................................................................................................................2016.000.001.00-1.004.007.00--2.00-----------------------------1.00----------------------
.............................................................................................TAAAGTGCTTACAGTTCA...........................................................................................................................................1812.000.00-------1.00-4.00--2.00-------------1.001.002.00-----------------------------1.00-
.............................................................................................TAAAGTGCTTACAGTGCAT..........................................................................................................................................198.000.001.001.002.00-2.00----------------------1.00---1.00----------------------------
.............................................................................................TAAAGTGCTTACAGTTCAG..........................................................................................................................................197.000.001.001.002.00-1.00--1.00-1.00--------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGA............................................................................................................................................175.000.001.00----------3.00-1.00----------------------------------------------
..............................................................................................AAAGTGCTTACAGTTCAGG.........................................................................................................................................195.000.00--1.00----2.00----------------------1.00-----------------1.00-----------
.............................................................................................TAAAGTGCTTACAGTGCTA..........................................................................................................................................195.000.00---4.00---1.00----------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGAAG..........................................................................................................................................195.000.001.00-1.001.00-2.00------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTATAG..........................................................................................................................................194.000.001.00-2.00-----------------------------------------------------1.00---
.............................................................................................TAAAGTGCTTACAGTTC............................................................................................................................................173.000.00--1.001.001.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCATA.........................................................................................................................................203.000.00-------1.00-----------------------------------------1.00--1.00-------
.............................................................................................TAAAGTGCTTACAGTTCACG.........................................................................................................................................202.000.001.00-1.00---------------------------------------------------------
........................................................................................................................................................TGTGTTGTGATTTAATTTTTCCC...........................................................................232.000.00-------------------------2.00----------------------------------
.............................................................................................TAAAGTGCTTACAGTTCAGA.........................................................................................................................................202.000.00--1.00----1.00----------------------------------------------------
......................TTACCATCAAATCAATTGA.................................................................................................................................................................................................................192.000.00----------------------1.00--------------------1.00----------------
.............................................................................................TAAAGTGCTTACAGTGCTG..........................................................................................................................................192.000.00--2.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGCCG..........................................................................................................................................192.000.00-2.00----------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTATCC.........................................................................................................................................201.000.00--1.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTGTAG.........................................................................................................................................201.000.00--1.00---------------------------------------------------------
.....TGTTTAGAAGGTATAAA....................................................................................................................................................................................................................................171.000.00--------------1.00---------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCAT..........................................................................................................................................191.000.00-1.00----------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTCAGG..........................................................................................................................................191.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTGA...........................................................................................................................................181.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTTGGGCAG......................................................................................................................................231.000.00---1.00--------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTTGGGCTT......................................................................................................................................231.000.00---1.00--------------------------------------------------------
..............................................................................................AAAGTGCTTACAGTTCATG.........................................................................................................................................191.000.00------------1.00-----------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTAGGT.........................................................................................................................................201.000.00----1.00-------------------------------------------------------
......................TTACCATCAAATCAATGGA.................................................................................................................................................................................................................191.000.00----------------------1.00-------------------------------------
.............................................................................................TAAAGTGCTTACAGTGCCA..........................................................................................................................................191.000.00-------1.00----------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCTGG.........................................................................................................................................201.000.00--1.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGT............................................................................................................................................171.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCCG..........................................................................................................................................191.000.00--1.00---------------------------------------------------------
........................................GTAGACAACCTTGTAATATTAACGAAGATC....................................................................................................................................................................................3011.001.00----------------------------------------1.00-------------------
.............................................................................................TAAAGTGCTTACAGTGTTA..........................................................................................................................................191.000.001.00-----------------------------------------------------------
........................................................................................................................................................................TTTAATTTCTACATTCATTCCATTTATG......................................................2811.001.00-----------------------------------------------------1.00------
.......TTTAGAAGGTATAAGTTC.................................................................................................................................................................................................................................181.000.00---------------------------------------------------------1.00--
.............................................................................................TAAAGTGCTTACAGTTCCGA.........................................................................................................................................201.000.00----------------------------------1.00-------------------------
.............................................................................................TAAAGTGCTTACAGTGGAG..........................................................................................................................................191.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTAAGG.........................................................................................................................................201.000.00--1.00---------------------------------------------------------
...............................AATCAAAGTGTAGACAACCTTGTA...................................................................................................................................................................................................2411.001.00------------------------------------1.00-----------------------
..............................................................................................AAAGTGCTTACAGTTCAGC.........................................................................................................................................191.000.00--1.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTCCGG..........................................................................................................................................191.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGCAC..........................................................................................................................................191.000.00--1.00---------------------------------------------------------
.................................................................................................................................................................ATTTAATTTTAATTTCTACATTCATTCCATTTACG......................................................351.000.00-------------------------------------------------------1.00----
.............................................................................................TAAAGTGCTTACAGTGCGG..........................................................................................................................................191.000.001.00-----------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTATGA.........................................................................................................................................201.000.00--1.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTACGT..........................................................................................................................................191.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTACAG..........................................................................................................................................191.000.00--1.00---------------------------------------------------------
..............................................................................................AAAGTGCTTACAGTTTGGA.........................................................................................................................................1911.001.00---------------------------------------------------1.00--------
.............................................................................................TAAAGTGCTTACAGTTCCGG.........................................................................................................................................201.000.00--1.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTGGTT.........................................................................................................................................201.000.00---1.00--------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTCAG...........................................................................................................................................181.000.00---1.00--------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCAGC.........................................................................................................................................201.000.001.00-----------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGGGG..........................................................................................................................................191.000.00--------1.00---------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTCT............................................................................................................................................171.000.00---1.00--------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGTC...........................................................................................................................................181.000.00-1.00----------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTAGGT..........................................................................................................................................191.000.00---1.00--------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCTGA.........................................................................................................................................201.000.00-------1.00----------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTAGG...........................................................................................................................................181.000.00----1.00-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTCTG..........................................................................................................................................191.000.00--1.00---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTGAAA..........................................................................................................................................191.000.00--1.00---------------------------------------------------------
.........................................................................................TTTGTAAAGTGCTTACACTC.............................................................................................................................................201.000.00---------------------------------------------1.00--------------
.............................................................................................TAAAGTGCTTACAGTTT............................................................................................................................................1740.750.75---0.500.25-------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTTTTTT........................................................................................................................................2140.250.75--0.25---------------------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTTCG..........................................................................................................................................1940.250.75--------------0.25---------------------------------------------
.............................................................................................TAAAGTGCTTACAGTTTTCT.........................................................................................................................................2040.250.750.25-----------------------------------------------------------

Antisense strand
GCTATTGTTTAGAAGGTATAAGTTACCATCAAATCAAAGTGTAGACAACCTTGTAATATTAACGAAGATCATTTGGTTTTTTAGTGAGTTTTGTAAAGTGCTTACAGTTTGGACTTTATTCCATTGCCCTTCTTTCCTTTCTGTCATCTAACTGTGTTGTGATTTAATTTTAATTTCTACATTCATTCCATTTATGTTAGAGAGATCAACCAGCTTTCACTCCTAGTGGAATATTAACTCCTCATGCCTT
.............................................................................................((((..((.(((((((..(((............................)))....)))))))..))..))))....................................................................................
........................................................................................89........................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR189782SRR189786SRR189787SRR343335SRR343334SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189783SRR343336SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR343337TAX577738(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191508(GSM715618)
152genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
..................................................................................................................................TCTTTCCTTTCTGTCCGTG..................................................................................................... 192.000.00-------------------2.00----------------------------------------
.................................................................................................................................................................................................................CCAGCTTTCACTCCTCTA....................... 181.000.00---------------------1.00--------------------------------------
..........................................................................................................................ATTGCCCTTCTTTCCTTCAA............................................................................................................ 201.000.00-----------------1.00------------------------------------------
......................TTACCATCAAATCAAGTAG................................................................................................................................................................................................................. 191.000.00-------------------1.00----------------------------------------
.............................................................................................................................AGAAAGGAAAGAAGGGC............................................................................................................ 1770.140.14-----------------------------------------------------------0.14