ID: uc002vte.2_intron_2_0_chr2_233568200_f.3p
GENE: (3)
chr2:233598927-233599176+


(1)
BRAIN
(2)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(2)
LIVER
(1)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
AAATTTATTTTTATTTGTTTATTTTGTAGAGACAGGGTCTCACTCCATCGTCTAGGCTGGAGTGCAGTGGCAGGACCACAACTCACTGCAGCCCCAAACTCCTGGGCTCAAGTGATCCCTCCACCTCACCCTCCCAGGCAGCTAAGACTACAGGCATGTACCACCATGCCCAGTTGATCTTTAACATTTCTTTTTTTTAGAGACCACGTCTCCACCTCCTGGGCTCCAACGATTCTCCCATCTTGGCCTC
......................................................((..((.(((..((((..(((.......(((((..(((((.........)))))..))))))))..))))..)))))..)).((...((((((.....((((((......))))))..(((((...))))).........))))))...)).............................................
..................................................51.........................................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................TAACATTTCTTTTTTTTATTG................................................2115.000.00--6.006.00--1.00----2.00-------------
......................................................................................................................................................................................AACATTTCTTTTTTTTATTG................................................207.000.00--4.002.00--1.00------------------
.........................................................................................................................................................................................ATTTCTTTTTTTTAGATC...............................................184.000.00-4.00-----------------------
.......................TTGTAGAGACAGGGTCCGGC...............................................................................................................................................................................................................202.000.002.00------------------------
....................ATTTTGTAGAGACAGGGTCCA.................................................................................................................................................................................................................212.000.002.00------------------------
.....................TTTTGTAGAGACAGGGTCTGTCC..............................................................................................................................................................................................................232.000.002.00------------------------
..........................................................................................................................................................................................................ACCACGTCTCCACCTCCTGGGCCCC.......................252.000.00-2.00-----------------------
.................TTTATTTTGTAGAGACAGGACTC..................................................................................................................................................................................................................232.000.002.00------------------------
.....................................................AGGCTGGAGTGCAGTGGCAGGGGA.............................................................................................................................................................................242.000.002.00------------------------
..................................................................................................................................................ACTACAGGCATGTACCACCATGCCGGC.............................................................................271.000.00-1.00-----------------------
..................................................TCTAGGCTGGAGTGCAGTGGCCCAG...............................................................................................................................................................................251.000.001.00------------------------
.................................................................................................ACTCCTGGGCTCAAGTGATCCCGCTG...............................................................................................................................261.000.001.00------------------------
........................................................................................................................................................................................CATTTCTTTTTTTTAGACG...............................................191.000.00-1.00-----------------------
............................................................AGTGCAGTGGCAGGACCCCGA.........................................................................................................................................................................211.000.00-1.00-----------------------
.......................................................................................................................................................................................ACATTTCTTTTTTTTAAATG...............................................201.000.00------1.00------------------
................................................................................................AACTCCTGGGCTCAAGTGATCCCTGGCC..............................................................................................................................281.000.001.00------------------------
........TTTTATTTGTTTATTTTGAAT.............................................................................................................................................................................................................................211.000.00-----1.00-------------------
.....................................................................................................................................................ACAGGCATGTACCACCATGCCGGCC............................................................................251.000.00-1.00-----------------------
.......................................................GCTGGAGTGCAGTGGCAGGGC..............................................................................................................................................................................211.000.001.00------------------------
.................................................................................CTCACTGCAGCCCCAAACAG.....................................................................................................................................................201.000.00-----1.00-------------------
.....................TTTTGTAGAGACAGGGTCCGGC...............................................................................................................................................................................................................221.000.001.00------------------------
..................................................TCTAGGCTGGAGTGCAGTGGCCCG................................................................................................................................................................................241.000.00-1.00-----------------------
.....................................................................................................................................................................................TAACATTTCTTTTTTTTAT..................................................191.000.00-----1.00-------------------
.....................................................AGGCTGGAGTGCAGTGGCAGGGGCC............................................................................................................................................................................251.000.001.00------------------------
...................................................................TGGCAGGACCACAACTCACT...................................................................................................................................................................2011.001.00----------------------1.00--
...............................................TCGTCTAGGCTGGAGTGCAGTGGGGCC................................................................................................................................................................................271.000.00-1.00-----------------------
....................................................TAGGCTGGAGTGCAGTGGCAGGGA..............................................................................................................................................................................241.000.00-----------------------1.00-
.....................................................AGGCTGGAGTGCAGTGGCAGGGCAC............................................................................................................................................................................251.000.001.00------------------------
..........................................................................ACCACAACTCACTGCAACTG............................................................................................................................................................201.000.001.00------------------------
..................................................TCTAGGCTGGAGTGCAGTGGCGCGT...............................................................................................................................................................................251.000.00------------------1.00------
.........................................................TGGAGTGCAGTGGCAGGACCCCC..........................................................................................................................................................................231.000.00-1.00-----------------------
.................TTTATTTTGTAGAGACAGGGTCAGGC...............................................................................................................................................................................................................261.000.00-1.00-----------------------
....................................................TAGGCTGGAGTGCAGTGGCAGGGCT.............................................................................................................................................................................251.000.00-1.00-----------------------
.....................................................AGGCTGGAGTGCAGTGGCAGGACCACGG.........................................................................................................................................................................281.000.00-1.00-----------------------
.............................................CATCGTCTAGGCTGGAGTGCAGTGGCAGGA...............................................................................................................................................................................3011.001.00--------1.00----------------
.....................................................................................................................................................................................TAACATTTCTTTTTTTATTG.................................................201.000.00--1.00----------------------
................................................................................ACTCACTGCAGCCCCAAACTCCCGG.................................................................................................................................................251.000.001.00------------------------
...............................................................................................AAACTCCTGGGCTCAAGTGATCCCTCCACCAC...........................................................................................................................321.000.001.00------------------------
.......................................................GCTGGAGTGCAGTGGCAGGGAA.............................................................................................................................................................................221.000.00-------1.00-----------------
....................ATTTTGTAGAGACAGGGCCGT.................................................................................................................................................................................................................211.000.001.00------------------------
.................TTTATTTTGTAGAGACAGGGTCAC.................................................................................................................................................................................................................241.000.00-1.00-----------------------
...................TATTTTGTAGAGACAGGGTGCTG................................................................................................................................................................................................................231.000.00-1.00-----------------------
..................................................TCTAGGCTGGAGTGCAGTGGGAC.................................................................................................................................................................................231.000.001.00------------------------
....................ATTTTGTAGAGACAGGGTCTCACCACC...........................................................................................................................................................................................................271.000.001.00------------------------
.....................................................AGGCTGGAGTGCAGTGGCAGGA...............................................................................................................................................................................2201.001.00-------------------1.00-----
.....................................................AGGCTGGAGTGCAGTGGCAGGGTA.............................................................................................................................................................................241.000.00-------1.00-----------------
....................................................TAGGCTGGAGTGCAGTGGCAGGGGGG............................................................................................................................................................................261.000.00-------1.00-----------------
....................ATTTTGTAGAGACAGGGTCTCGCCG.............................................................................................................................................................................................................251.000.00-1.00-----------------------
........................................................CTGGAGTGCAGTGGCAGGACCCCGG.........................................................................................................................................................................251.000.001.00------------------------
..................................................TCTAGGCTGGAGTGCATTGT....................................................................................................................................................................................201.000.00--------------1.00----------
..................................................................................................................ATCCCTCCACCTCACCCCCAG...................................................................................................................211.000.00-1.00-----------------------
................................................................................ACTCACTGCAGCCCCGTA........................................................................................................................................................181.000.00--------------------1.00----
....................ATTTTGTAGAGACAGGGTCCCCC...............................................................................................................................................................................................................231.000.001.00------------------------
............................................................AGTGCAGTGGCAGGACCACAGCC.......................................................................................................................................................................231.000.00-1.00-----------------------
.............................................................................................................................................................................................................ACGTCTCCACCTCCTGGGCTCC.......................2211.001.00------------1.00------------
....................................................TAGGCTGGAGTGCAGTGGCCC.................................................................................................................................................................................211.000.00---------1.00---------------
...........................................................GAGTGCAGTGGCAGGACCACAACTCACTGT.................................................................................................................................................................301.000.00-1.00-----------------------
................................................................................ACTCACTGCAGCCCCAAACTCCTGGGCT..............................................................................................................................................2830.330.33-0.33-----------------------
................................................................................ACTCACTGCAGCCCCAAACTCCTGGGC...............................................................................................................................................2740.250.250.25------------------------
..............................................................................................................................................................................................................CGTCTCCACCTCCTGG............................1640.250.25------------------------0.25
................................................................................ACTCACTGCAGCCCCAAACTCCTGGGCCC.............................................................................................................................................2940.250.250.25------------------------
.....................................................AGGCTGGAGTGCAGTGGCAGGACCA............................................................................................................................................................................2590.110.11-0.11-----------------------

Antisense strand
AAATTTATTTTTATTTGTTTATTTTGTAGAGACAGGGTCTCACTCCATCGTCTAGGCTGGAGTGCAGTGGCAGGACCACAACTCACTGCAGCCCCAAACTCCTGGGCTCAAGTGATCCCTCCACCTCACCCTCCCAGGCAGCTAAGACTACAGGCATGTACCACCATGCCCAGTTGATCTTTAACATTTCTTTTTTTTAGAGACCACGTCTCCACCTCCTGGGCTCCAACGATTCTCCCATCTTGGCCTC
......................................................((..((.(((..((((..(((.......(((((..(((((.........)))))..))))))))..))))..)))))..)).((...((((((.....((((((......))))))..(((((...))))).........))))))...)).............................................
..................................................51.........................................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
............................................................................................................................................................TGTACCACCATGCCCAGACG.......................................................................... 207.000.00----7.00--------------------
........................................................................................................................CCACCTCACCCTCCCAGTAG.............................................................................................................. 202.000.00----------2.00--------------
...................................................................................CACTGCAGCCCCAAACTCCTGGGGA.............................................................................................................................................. 252.000.00---------------1.00-1.00-------
..................................................................................................CTCCTGGGCTCAAGTGATCCCTGCTG.............................................................................................................................. 262.000.001.001.00-----------------------
.................................................................................CTCACTGCAGCCCCAAACTCCTGGG................................................................................................................................................ 251.000.001.00------------------------
................................................................................ACTCACTGCAGCCCCAAACTCCAAG................................................................................................................................................. 251.000.00--------1.00----------------
....................................................................................................................................................................CATGCCCAGTTGATCTTTT................................................................... 191.000.00-----1.00-------------------
................................................CGTCTAGGCTGGAGTGCAGTCGC................................................................................................................................................................................... 231.000.00-1.00-----------------------
.................................................GTCTAGGCTGGAGTGCAGTGGCAACAG.............................................................................................................................................................................. 271.000.001.00------------------------
............................GAGACAGGGTCTCACTCCATCGGG...................................................................................................................................................................................................... 241.000.00-1.00-----------------------
...........................................................................................................GTGGAGGGATCACTTGA.............................................................................................................................. 1701.001.00-------------1.00-----------
.................................................................................................ACTCCTGGGCTCAAGTGATCCCTC................................................................................................................................. 241.000.001.00------------------------
..................................................................................................CTCCTGGGCTCAAGTGATCCCTCCTG.............................................................................................................................. 261.000.00-1.00-----------------------
......................................................GGCTGGAGTGCAGTGGCAGGAGGGC........................................................................................................................................................................... 251.000.00-1.00-----------------------
......................................................................................................................................................................................................AGAGACCACGTCTCCGACC................................. 191.000.00----------------1.00--------
..................................................................................................................................................................AAGATCAACTGGGCATGGT..................................................................... 1911.001.00---------------------1.00---
.....................................................................................AGTTTGGGGCTGCAG...................................................................................................................................................... 1501.001.00---------1.00---------------
................................................................................................................................................................CCACCATGCCCAGTTGACGAG..................................................................... 211.000.001.00------------------------
.................................................................................................................................CCTCCCAGGCAGCTAAGACTATG.................................................................................................. 231.000.001.00------------------------