ID: uc002vqx.2_intron_5_0_chr2_231675038_f.3p
GENE: (6)
chr2:231678564-231678813+


(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(13)
CELL-LINE
(1)
CERVIX
(2)
HEART
(3)
OTHER
(2)
SKIN

Sense strand
CCTGAGAGTCTCAGAGCAAACATGTCAGAGGAAGACATGAAAGAGAGTGGCAGGGGAGCCAGGGCAGCTGTTGGCCTTCATGGTGTGAGAAATGTGTCCTTAAGCTAATTTACAATGTTACCTACCAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAATAACCCTGATTTATGTTCTCTTATCTTTTAGTTTTTCAGTGAATATGAGAAGTTACTTCATTCAGAAAATTATGTGACAAA
............................................................................................................................((((..................................))))....................................................................................
........................................................................................................................121............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCC............................................................................................3239.000.0037.002.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAG.......................................................................................3528.000.00--13.0012.001.002.00------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCC...........................................................................................3328.000.0022.006.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTCCC..............................................................................................3127.000.0019.008.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTCCC................................................................................................2925.000.0020.005.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCCCC..............................................................................................3024.000.0021.003.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCCC...............................................................................................2924.000.0021.003.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC.........................................................................................3320.000.009.001.005.003.001.00-1.00-----------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCC............................................................................................3316.000.008.008.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGAG.................................................................................................2716.000.0011.005.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTCCC.................................................................................................2812.000.0010.002.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGAG...............................................................................................2912.000.008.004.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCCC...........................................................................................3311.000.0011.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAG.........................................................................................3310.000.00--5.003.001.001.00------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTCCCC................................................................................................2910.000.007.003.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTC..........................................................................................3210.000.00-3.002.003.001.001.00------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTCCCC.............................................................................................329.000.007.002.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAT.......................................................................................359.000.00--6.002.001.00-------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCT.........................................................................................339.000.00--3.004.001.00-1.00-----------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTCCCC..............................................................................................319.000.006.003.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC.......................................................................................357.000.00--4.003.00--------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCCT................................................................................................287.000.006.001.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTCCCC...............................................................................................306.000.005.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCGAG..............................................................................................306.000.005.001.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.......................................................................................355.000.00--4.001.00--------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG.......................................................................................355.000.00---5.00--------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.........................................................................................335.000.00--3.001.001.00-------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCG.........................................................................................335.000.00--1.004.00--------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAG.......................................................................................355.000.00--1.003.00-1.00------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTCC................................................................................................285.000.005.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTCCCC....................................................................................................255.000.004.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGG................................................................................................285.000.003.002.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCGAG............................................................................................325.000.002.003.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTC.......................................................................................354.000.00---1.002.001.00------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAGG..............................................................................................304.000.004.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTCC...............................................................................................294.000.003.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTT...........................................................................................334.000.002.001.00------------------1.00---
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGG..................................................................................................264.000.004.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATC.........................................................................................334.000.001.00-1.001.00-1.00------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAA.........................................................................................334.000.00--1.002.00-1.00------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC..........................................................................................324.000.003.00-1.00---------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG.........................................................................................334.000.00--3.00--1.00------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTC.................................................................................................274.000.004.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTCGAG...................................................................................................264.000.004.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTT.......................................................................................354.000.00--3.00--1.00------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAT.......................................................................................354.000.00---2.00-2.00------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGACC.............................................................................................313.000.003.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTACC............................................................................................323.000.003.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCCT...........................................................................................333.000.002.001.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTCGAG.......................................................................................................223.000.003.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCAGC...............................................................................................293.000.003.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCTT.............................................................................................313.000.002.001.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTCTCC..............................................................................................313.000.002.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCTGG.................................................................................................273.000.003.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTAG...............................................................................................293.000.003.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACC.........................................................................................333.000.00---1.002.00-------------------
......................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTT................................................................................363.000.00--1.00--2.00------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTCG...................................................................................................262.000.002.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGG........................................................................................342.000.00--1.001.00--------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGCC...........................................................................................332.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTC...............................................................................................292.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGGT.................................................................................................272.000.002.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTCGAG...............................................................................................302.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTGC................................................................................................282.000.001.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGTT..............................................................................................302.000.002.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTCCCT.............................................................................................322.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCTC............................................................................................322.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCT...........................................................................................332.000.001.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGA................................................................................................282.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCG.................................................................................................272.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCGG...............................................................................................292.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGTC...........................................................................................332.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCCTC............................................................................................322.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTAC................................................................................................282.000.002.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTCTCC.......................................................................................................222.000.001.001.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGG.........................................................................................332.000.00---2.00--------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCC.........................................................................................332.000.001.001.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCCTT.................................................................................................272.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGC............................................................................................322.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTAC..............................................................................................302.000.001.001.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAC.......................................................................................352.000.00--1.00-1.00-------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCC.......................................................................................352.000.00--1.001.00--------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTCGAG....................................................................................................252.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGG.................................................................................................272.000.002.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTCTCC.............................................................................................322.000.001.001.00----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGC.........................................................................................332.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCG..............................................................................................302.000.002.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAGTC.............................................................................................312.000.002.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTCGAG................................................................................................292.000.002.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTCGAG.................................................................................................282.000.002.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG.......................................................................................352.000.00--1.001.00--------------------
.......................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTAC...............................................................................361.000.00-----1.00------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTCG.................................................................................................281.000.00------1.00-----------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCTAC.................................................................................................271.000.001.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGC.........................................................................................331.000.00----1.00-------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTAG..............................................................................................301.000.00-1.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTCGCC...................................................................................................261.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTTT..............................................................................................301.000.00-1.00----------------------
.............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGGCAAGGG..............................................................................311.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTATCC...........................................................................................331.000.001.00-----------------------
............................................................................................................................CCAGTCTTTTTTTTTTTTTTTTTTTTTTACAT..............................................................................................321.000.00----1.00-------------------
.............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGGCACCCC..............................................................................311.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTCCGG.................................................................................................281.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCTC.............................................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAACC...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAATC.............................................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAG...........................................................................................331.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTAGAG..............................................................................................311.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTAG.................................................................................................281.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTGGGC.................................................................................................281.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTTC..............................................................................................301.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGA................................................................................................281.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTCAAC................................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTTA...............................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCACA...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCGG................................................................................................281.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTGG................................................................................................281.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTCCCT...................................................................................................261.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCC...........................................................................................341.000.00---1.00--------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAAGC..............................................................................................301.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTGT................................................................................................281.000.001.00-----------------------
............................................................................................................................CCAGTCTTTTTTTTTTTTTACTC.......................................................................................................231.000.00------1.00-----------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCAGG................................................................................................281.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTC................................................................................................281.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCTCC............................................................................................321.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCTC...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCGCC..............................................................................................301.000.001.00-----------------------
..........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAGGC..............................................................................341.000.00------1.00-----------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTATTT..............................................................................................301.000.001.00-----------------------
.......................................AAAGAGAGTGGCAGGGGGGGG..............................................................................................................................................................................................211.000.00---------1.00--------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTGACC..................................................................................................271.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTCG...............................................................................................291.000.00---1.00--------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGCG...........................................................................................331.000.001.00-----------------------
..............................................................................................................................................................................................................AGTGAATATGAGAAGTTT..........................181.000.00----------------1.00-------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCAGG..............................................................................................301.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCT............................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAT...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAAAC..............................................................................................301.000.001.00-----------------------
...........................................................................................................................ACCAGTCTTTTTTTTTTTTTTTTTGC.....................................................................................................261.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGGC.................................................................................................271.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCCT...............................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTACAG.............................................................................................311.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTCTT...............................................................................................301.000.00-1.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTTCTC.............................................................................................321.000.00--1.00---------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTACT...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAAC..............................................................................................301.000.001.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGC.........................................................................................331.000.00--1.00---------------------
..........................................GAGAGTGGCAGGGGACT...............................................................................................................................................................................................171.000.00---------------------1.00--
..................................................................................................................................................................................................................................TCATTCAGAAAATTATGTGACAA.2311.001.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAGCC..............................................................................................301.000.001.00-----------------------
.............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGGCACCCT..............................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCGC...............................................................................................291.000.00-1.00----------------------
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTGGCACCG...............................................................................321.000.00------1.00-----------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAAGG..............................................................................................301.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTT...............................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGTTA.............................................................................................311.000.001.00-----------------------
............................................................................................................................CCAGTCTTTTTTTTTTTTTTTTTTTTGGAG................................................................................................301.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTCTG..................................................................................................271.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAATT...........................................................................................331.000.00---1.00--------------------
.........................................................................................................................................................................TAACCCTGATTTATGTTCTCTTTTT........................................................251.000.00---------------1.00--------
........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTCAA...............................................................................351.000.00--1.00---------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTT.........................................................................................331.000.00----1.00-------------------
............................................................................................................................................................................................................TCAGTGAATATGAGAAGTTACT........................2211.001.00------------------1.00-----
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCCG..................................................................................................261.000.001.00-----------------------
.............................................................................................................................................................................................................................TTACTTCATTCAGAAAATTATG.......2211.001.00-------------------1.00----
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTG.........................................................................................331.000.00--1.00---------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTCCT...............................................................................................301.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCAGC.................................................................................................271.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTATCC.............................................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTCT................................................................................................281.000.00-1.00----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTGGG...................................................................................................261.000.001.00-----------------------
.........................................................................................................................CTACCAGTCTTTTTTTTTTTTTTGG........................................................................................................251.000.00----1.00-------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTTC................................................................................................281.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCCG.............................................................................................311.000.001.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG.........................................................................................331.000.00--1.00---------------------
...............................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC..................................................................................................251.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTCTCC.................................................................................................281.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAACC.............................................................................................311.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCAC.................................................................................................271.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCAAC...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTAGC...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCAC...............................................................................................291.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTGGGG...................................................................................................261.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAGGG..............................................................................................301.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTATTG..............................................................................................301.000.001.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCG.........................................................................................331.000.00---1.00--------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGTTT.............................................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCCG...............................................................................................291.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTTTAG.............................................................................................321.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGCGT.............................................................................................311.000.001.00-----------------------
.........................................AGAGAGTGGCAGGGGGGCC..............................................................................................................................................................................................191.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGGGC.............................................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATT.........................................................................................351.000.00---1.00--------------------
...............................................................................................................................................................................................................GTGAATATGAGAAGTTAC.........................1811.001.00-------------1.00----------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCGG............................................................................................321.000.001.00-----------------------
......................................................................................................................TACCTACCAGTCTTTTTTTTTTTTTTTTTTT.....................................................................................................3111.001.00------1.00-----------------
......................................................................................................................................................................CAATAACCCTGATTTATGTTC...............................................................2111.001.00------1.00-----------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTACTG..............................................................................................301.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTTG...............................................................................................291.000.00-1.00----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCGC................................................................................................281.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGT.................................................................................................271.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCG................................................................................................281.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGTT...............................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCTG...........................................................................................331.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTCTCC...................................................................................................261.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTACAT.............................................................................................311.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTATC...............................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTATC............................................................................................321.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCAC................................................................................................281.000.001.00-----------------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTCCCT................................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGGG...............................................................................................291.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAGAG..............................................................................................301.000.001.00-----------------------
.............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGGCACGAG..............................................................................311.000.00------1.00-----------------
........................................................................................................................................................TTTTTTTTTTTTGGCAATCAT.............................................................................211.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCTCC...........................................................................................331.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGT................................................................................................281.000.001.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCA.........................................................................................331.000.00---1.00--------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGC................................................................................................281.000.001.00-----------------------
..............................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTATTT...........................................................................................331.000.001.00-----------------------
................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAC.........................................................................................331.000.00--1.00---------------------
.......................................AAAGAGAGTGGCAGGGGGAGA..............................................................................................................................................................................................211.000.00---------1.00--------------
.............................................................................................................................CAGTCTTTTTTTTTTTTTTTTTTTTTTTCGAG.............................................................................................321.000.00-1.00----------------------
.............................................................................................................................................................................................................CAGTGAATATGAGAAG.............................1660.170.17----------------------0.17-
........................................................................................................................................................................................................................................AGAAAATTATGTGACA..1680.120.12-----------------------0.12

Antisense strand
CCTGAGAGTCTCAGAGCAAACATGTCAGAGGAAGACATGAAAGAGAGTGGCAGGGGAGCCAGGGCAGCTGTTGGCCTTCATGGTGTGAGAAATGTGTCCTTAAGCTAATTTACAATGTTACCTACCAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAATAACCCTGATTTATGTTCTCTTATCTTTTAGTTTTTCAGTGAATATGAGAAGTTACTTCATTCAGAAAATTATGTGACAAA
............................................................................................................................((((..................................))))....................................................................................
........................................................................................................................121............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGACT............................................................................................. 3104.004.00--------4.00---------------
......................................................................................................................................CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................... 3204.004.00-------3.00--1.00-------------
....................................................................................................................................CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................... 3402.002.00-------1.00--1.00-------------
........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTT................................................................................ 341.000.00-----------1.00------------
...............................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAC............................................................................................ 3101.001.00--------1.00---------------
.................................................................................................................................................................................ATTTATGTTCTCTTAAATG...................................................... 191.000.00--------------1.00---------
....................................................................................................................................................TTTTTTTTTTTTTTTTGGCT.................................................................................. 201.000.00-----------------1.00------
............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTGGCTG................................................................................. 291.000.00------------1.00-----------
........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTGT................................................................................ 341.000.00-----------1.00------------
........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC................................................................................... 311.000.00-------1.00----------------