| (1) B-CELL | (3) BREAST | (10) CELL-LINE | (5) CERVIX | (2) HEART | (2) HELA | (2) OTHER | (8) SKIN |
| GGGAGCCAGAGGGCGGGGGTCCTCGCCGGGACCCTCCTGTGGGCCCAGGGGTGAGTGTTGACGTCTTCCCGACCCGCGACCTGCCGCCCGAGCTGGCTGCCAGGCCTATCGCCGCCGCCGAGACCCTCCGGCCAACAGGGACCCGCGGTGGCCCCGGCCCCCCCGGTAGTGTCTCCCTGACCCGAGTCCCGTCCCCGGGCCTCTTGCCTTCAACCCTGGTCTTTCCTCCTCCCCGGGACCTTGAGTCCCC .....................................................................................((....))..((((((.((((....((((((((.....((((.........))))....))))))))...)))).....))))))................................................................................ .................................................................................82..........................................................................................174.......................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | TAX577741(Rovira) total RNA. (breast) | SRR040016(GSM532901) G645N. (cervix) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR040037(GSM532922) G243T. (cervix) | SRR189787 | SRR343333(GSM796036) KSHV (HHV8). (cell line) | GSM416733(GSM416733) HEK293. (cell line) | SRR189785 | SRR037931(GSM510469) 293GFP. (cell line) | SRR040008(GSM532893) G727N. (cervix) | GSM532884(GSM532884) G871T. (cervix) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330899(SRX091737) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | TAX577589(Rovira) total RNA. (breast) | SRR330869(SRX091707) tissue: skin psoriatic involveddisease state:. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) | TAX577745(Rovira) total RNA. (breast) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) | SRR040015(GSM532900) G623T. (cervix) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR444046(SRX128894) Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................CCCCGGCCCCCCCGGGGGA................................................................................ | 19 | 77.00 | 0.00 | 52.00 | 24.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................CCCCGGCCCCCCCGGGGG................................................................................. | 18 | 9.00 | 0.00 | 5.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......CAGAGGGCGGGGGTCCTCGCCGG............................................................................................................................................................................................................................. | 23 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................GCCGGGACCCTCCTGTGGGCCCAGT......................................................................................................................................................................................................... | 25 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................CGGGACCCTCCTGTGGGC.............................................................................................................................................................................................................. | 18 | 2 | 1.50 | 1.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | 0.50 | 0.50 | - | - | - | - |
| ......................................................................................CCCGAGCTGGCTGCCAG................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................GACGTCTTCCCGACCCGC............................................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................CCCCGGCCCCCCCGGGGGC................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................GGCCCCGGCCCCCCCCC.................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................CCCCGGCCCCCCCGGGGA................................................................................. | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................AGACCCTCCGGCCAACATGG.............................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................CCCCGGCCCCCCCGGGGTA................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................GCCGCCCGAGCTGGCTGCCAG................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................CCCGGCCCCCCCGGTGTC................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................GTGAGTGTTGACGTCTCTTG.................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................CCCCGGCCCCCCCGGGTA................................................................................. | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................GGCCCCGGCCCCCCCCCCG.................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................GCCGCCGCCGAGACCCTGGA........................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................CCTCCGGCCAACAGGGAC............................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TTCCTCCTCCCCGGGA............ | 16 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - |
| .......................CGCCGGGACCCTCCT.................................................................................................................................................................................................................... | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| GGGAGCCAGAGGGCGGGGGTCCTCGCCGGGACCCTCCTGTGGGCCCAGGGGTGAGTGTTGACGTCTTCCCGACCCGCGACCTGCCGCCCGAGCTGGCTGCCAGGCCTATCGCCGCCGCCGAGACCCTCCGGCCAACAGGGACCCGCGGTGGCCCCGGCCCCCCCGGTAGTGTCTCCCTGACCCGAGTCCCGTCCCCGGGCCTCTTGCCTTCAACCCTGGTCTTTCCTCCTCCCCGGGACCTTGAGTCCCC .....................................................................................((....))..((((((.((((....((((((((.....((((.........))))....))))))))...)))).....))))))................................................................................ .................................................................................82..........................................................................................174.......................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | TAX577741(Rovira) total RNA. (breast) | SRR040016(GSM532901) G645N. (cervix) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR040037(GSM532922) G243T. (cervix) | SRR189787 | SRR343333(GSM796036) KSHV (HHV8). (cell line) | GSM416733(GSM416733) HEK293. (cell line) | SRR189785 | SRR037931(GSM510469) 293GFP. (cell line) | SRR040008(GSM532893) G727N. (cervix) | GSM532884(GSM532884) G871T. (cervix) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330899(SRX091737) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | TAX577589(Rovira) total RNA. (breast) | SRR330869(SRX091707) tissue: skin psoriatic involveddisease state:. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) | TAX577745(Rovira) total RNA. (breast) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) | SRR040015(GSM532900) G623T. (cervix) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR444046(SRX128894) Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................ACGGGACTCGGGTCAGGGAGA.......................................................... | 21 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................GGGACCCTCCTGTGGTCT............................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................GCCCCGGCCCCCCCGGGC.................................................................................. | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................TTCCTCCTCCCCGGGACG.......... | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................GGTGGCCCCGGCCCCCCAAA.................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................GGTGGCCCCGGCCCCCCCCTC................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................AGACCAGGGTTGAAGGCA............................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................GGGTCGGGAAGACGT............................................................................................................................................................................... | 15 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................GGCCCCGGCCCCCCCTGT................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................CCGGGCCTCTTGCCTCAAG..................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................GGCGATAGGCCTGGCAGCCAGCT......................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................CCCCGGCCCCCCCGGGG.................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................TTTCCTCCTCCCCGGGAGAA......... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................AGGCCCGGGGACGGGACT................................................ | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| ........................................................................................................................................................................................AGTCCCGTCCCCGGGGCG................................................ | 18 | 0.33 | 0.00 | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................CGGGGGGGCCGGGGCC..................................................................................... | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................CCCGGGGACGGGACT................................................... | 15 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - |
| .......................................CTCACCCCTGGGCCCA................................................................................................................................................................................................... | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |